Guide to the Human Genome
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Name: NDE1 Sequence: fasta or formatted (335aa) NCBI GI: 221316642
Description:

nuclear distribution gene E homolog 1

Referenced in:

Dynein and Dynactin

Other entries for this name:
alt mRNA [335aa] nuclear distribution gene E homolog 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         24           2
 C cysteine            0.9          3           1
 D aspartate           6.0         20           2
 E glutamate          11.9         40           4
 F phenylalanine       1.8          6           1
 G glycine             5.4         18           2
 H histidine           0.6          2           1
 I isoleucine          3.0         10           1
 K lysine              5.4         18           1
 L leucine            10.1         34           2
 M methionine          1.5          5           1
 N asparagine          4.2         14           2
 P proline             3.9         13           1
 Q glutamine           6.3         21           2
 R arginine            9.3         31           2
 S serine             10.7         36           4
 T threonine           6.6         22           2
 V valine              3.0         10           1
 W tryptophan          0.6          2           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear distribution gene E homolog 1 
NDE1                  1.000   nuclear distribution gene E homolog 1 
NDEL1                 0.499   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.499   nudE nuclear distribution gene E homolog (A. nidulan...
MYH10                 0.059   myosin, heavy polypeptide 10, non-muscle 
TPR                   0.056   nuclear pore complex-associated protein TPR 
CGNL1                 0.054   cingulin-like 1 
RBM25                 0.054   RNA binding motif protein 25 
TRIP11                0.052   thyroid hormone receptor interactor 11 
MYH9                  0.049   myosin, heavy polypeptide 9, non-muscle 
DEF6                  0.049   differentially expressed in FDCP 6 homolog 
LOC283685             0.049   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ROCK2                 0.048   Rho-associated, coiled-coil containing protein kinas...
CIT                   0.048   citron 
SYCP1                 0.046   synaptonemal complex protein 1 
MYH2                  0.046   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.046   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH6                  0.046   myosin heavy chain 6 
MYH8                  0.046   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH7                  0.045   myosin, heavy chain 7, cardiac muscle, beta 
LOC400352             0.045   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.045   PREDICTED: similar to Putative golgin subfamily A m...
LOC283685             0.045   PREDICTED: golgi autoantigen, golgin subfamily a-li...
INCENP                0.045   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.045   inner centromere protein antigens 135/155kDa isofor...
MYH11                 0.045   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.045   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.045   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.045   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH1                  0.045   myosin, heavy chain 1, skeletal muscle, adult [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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