Guide to the Human Genome
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Name: LOC100292388 Sequence: fasta or formatted (66aa) NCBI GI: 239758139
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1          6           2
 C cysteine            1.5          1           1
 D aspartate           0.0          0           0
 E glutamate           1.5          1           1
 F phenylalanine       1.5          1           1
 G glycine             7.6          5           1
 H histidine           6.1          4           1
 I isoleucine          0.0          0           0
 K lysine              1.5          1           1
 L leucine             7.6          5           2
 M methionine          1.5          1           1
 N asparagine          0.0          0           0
 P proline            27.3         18           4
 Q glutamine           0.0          0           0
 R arginine            9.1          6           1
 S serine             18.2         12           8
 T threonine           0.0          0           0
 V valine              6.1          4           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
IRS2                  0.126   insulin receptor substrate 2 
PRB1                  0.109   proline-rich protein BstNI subfamily 1 isoform 1 pre...
SIX5                  0.109   sine oculis homeobox homolog 5 
FMNL1                 0.101   formin-like 1 
VASP                  0.101   vasodilator-stimulated phosphoprotein 
DSCAML1               0.101   Down syndrome cell adhesion molecule like 1 
WASF3                 0.101   WAS protein family, member 3 
CCNK                  0.101   cyclin K isoform 1 
DIAPH1                0.092   diaphanous 1 isoform 2 
DIAPH1                0.092   diaphanous 1 isoform 1 
PRB2                  0.092   proline-rich protein BstNI subfamily 2 
WASL                  0.092   Wiskott-Aldrich syndrome gene-like protein 
LOC100131102          0.092   PREDICTED: hypothetical protein 
ANTXR1                0.092   anthrax toxin receptor 1 isoform 1 precursor 
RANBP9                0.084   RAN binding protein 9 
ZFHX4                 0.084   zinc finger homeodomain 4 
HOXA3                 0.084   homeobox A3 isoform a 
HOXA3                 0.084   homeobox A3 isoform a 
ZNF385C               0.084   PREDICTED: zinc finger protein 385C 
ZNF385C               0.084   PREDICTED: zinc finger protein 385C 
ZNF385C               0.084   PREDICTED: zinc finger protein 385C 
PRB1                  0.084   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.084   proline-rich protein BstNI subfamily 1 isoform 2 pre...
FMN1                  0.084   formin 1 
LOC100131102          0.084   PREDICTED: hypothetical protein 
LOC100131102          0.084   PREDICTED: hypothetical protein 
MLL2                  0.084   myeloid/lymphoid or mixed-lineage leukemia 2 
SALL3                 0.084   sal-like 3 
WIPF3                 0.084   WAS/WASL interacting protein family, member 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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