Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239757894
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757894 PREDICTED: similar to Rhox homeobox family, member
1 [Homo sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757894 PREDICTED: similar to Rhox homeobox family, member ... 339 6e-94
gi|23943886 Rhox homeobox family, member 1 [Homo sapiens] 192 1e-49
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 89 3e-18
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 73 1e-13
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens] 73 1e-13
gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens] 71 4e-13
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens] 71 4e-13
gi|4557489 cone-rod homeobox protein [Homo sapiens] 71 6e-13
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 70 1e-12
gi|153791494 Rhox homeobox family, member 2B [Homo sapiens] 69 2e-12
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 69 2e-12
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 69 2e-12
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 69 2e-12
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 69 2e-12
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 69 2e-12
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 69 2e-12
gi|46249382 paired-like homeobox 2a [Homo sapiens] 69 2e-12
gi|14249119 Rhox homeobox family, member 2 [Homo sapiens] 69 2e-12
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 69 3e-12
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 69 3e-12
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 69 3e-12
gi|12707580 paired-like homeobox 2b [Homo sapiens] 69 3e-12
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 68 4e-12
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 68 4e-12
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 68 4e-12
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 68 4e-12
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 68 4e-12
gi|27777663 goosecoid [Homo sapiens] 68 4e-12
gi|24497589 aristaless related homeobox [Homo sapiens] 68 5e-12
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 67 8e-12
>gi|239757894 PREDICTED: similar to Rhox homeobox family, member 1
[Homo sapiens]
Length = 177
Score = 339 bits (870), Expect = 6e-94
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 60
MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK
Sbjct: 1 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 60
Query: 61 NKRARCRRHQRELMLANELRADPDDCVYIVVDXXXXXXXXASLEMGFSGATDTWAAHAAQ 120
NKRARCRRHQRELMLANELRADPDDCVYIVVD ASLEMGFSGATDTWAAHAAQ
Sbjct: 61 NKRARCRRHQRELMLANELRADPDDCVYIVVDXXXXXXXXASLEMGFSGATDTWAAHAAQ 120
Query: 121 ATLISSALMLSIKRQILNIFVFVCQLWDHKYVQEGVKQIPGETTVYSQIKLSSSYAD 177
ATLISSALMLSIKRQILNIFVFVCQLWDHKYVQEGVKQIPGETTVYSQIKLSSSYAD
Sbjct: 121 ATLISSALMLSIKRQILNIFVFVCQLWDHKYVQEGVKQIPGETTVYSQIKLSSSYAD 177
>gi|23943886 Rhox homeobox family, member 1 [Homo sapiens]
Length = 184
Score = 192 bits (488), Expect = 1e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 60
MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK
Sbjct: 93 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 152
Query: 61 NKRARCRRHQRELMLANELRADPDDCVYIVVD 92
NKRARCRRHQRELMLANELRADPDDCVYIVVD
Sbjct: 153 NKRARCRRHQRELMLANELRADPDDCVYIVVD 184
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 88.6 bits (218), Expect = 3e-18
Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 2 EGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKN 61
EGPQP + R RRT FT Q++ELE+ F +QYPDV R LA L +TED+V+VWF+N
Sbjct: 131 EGPQPPERK-RRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQN 189
Query: 62 KRARCRRHQRELMLANELRAD 82
+RA+ +R+QR LML N AD
Sbjct: 190 RRAKWKRNQRVLMLRNTATAD 210
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 73.2 bits (178), Expect = 1e-13
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 1 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 60
ME ++ R RT FTL Q+ ELE +F T YPD R EL++ LG++E +V+VWF+
Sbjct: 130 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 189
Query: 61 NKRARCRRHQREL 73
N+RA+CR+ + +L
Sbjct: 190 NRRAKCRKQENQL 202
>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
Length = 190
Score = 73.2 bits (178), Expect = 1e-13
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 1 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 60
ME ++ R RT FTL Q+ ELE +F T YPD R EL++ LG++E +V+VWF+
Sbjct: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
Query: 61 NKRARCRRHQREL 73
N+RA+CR+ + +L
Sbjct: 61 NRRAKCRKQENQL 73
>gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]
Length = 225
Score = 71.2 bits (173), Expect = 4e-13
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 9 MQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRR 68
++ R RT FTL Q+ ELE +F T YPD R EL++ LG++E +V+VWF+N+RA+CR+
Sbjct: 115 LKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 174
Query: 69 HQREL 73
+ ++
Sbjct: 175 QENQM 179
>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
Length = 292
Score = 71.2 bits (173), Expect = 4e-13
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 9 MQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRR 68
++ R RT FTL Q+ ELE +F T YPD R EL++ LG++E +V+VWF+N+RA+CR+
Sbjct: 115 LKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 174
Query: 69 HQREL 73
+ ++
Sbjct: 175 QENQM 179
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 70.9 bits (172), Expect = 6e-13
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 12 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 71
R RT FT Q+EELE++F TQYPDV R E+A + + E +V+VWFKN+RA+CR+ ++
Sbjct: 40 RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQ 99
Query: 72 E 72
+
Sbjct: 100 Q 100
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 70.1 bits (170), Expect = 1e-12
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 12 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 71
R RT FTL Q+E LE+VF T YPDV TR ELA + +TE +V+VWF+N+RA+ R+ +R
Sbjct: 39 RRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|153791494 Rhox homeobox family, member 2B [Homo sapiens]
Length = 288
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 3 GPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNK 62
G +P N Q FT LQ++ELE +F+ Q+P RR LA ++ VTE V++WF+N+
Sbjct: 127 GLEPGNAQQPNVHA-FTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENR 185
Query: 63 RARCRRHQRELMLANEL 79
RA+ RRHQR LM N L
Sbjct: 186 RAKWRRHQRALMARNML 202
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 213 PLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 272
Query: 66 CRRH--QRELMLANEL 79
R+ +LM N L
Sbjct: 273 WRKQAGANQLMAFNHL 288
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 214 PLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273
Query: 66 CRRH--QRELMLANEL 79
R+ +LM N L
Sbjct: 274 WRKQAGANQLMAFNHL 289
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 214 PLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273
Query: 66 CRRH--QRELMLANEL 79
R+ +LM N L
Sbjct: 274 WRKQAGANQLMAFNHL 289
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 214 PLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273
Query: 66 CRRH--QRELMLANEL 79
R+ +LM N L
Sbjct: 274 WRKQAGANQLMAFNHL 289
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 214 PLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273
Query: 66 CRRH--QRELMLANEL 79
R+ +LM N L
Sbjct: 274 WRKQAGANQLMAFNHL 289
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 214 PLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273
Query: 66 CRRH--QRELMLANEL 79
R+ +LM N L
Sbjct: 274 WRKQAGANQLMAFNHL 289
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 68.9 bits (167), Expect = 2e-12
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 4 PQP----ENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWF 59
P+P E + R RT FT Q++ELE VF T YPD+ TR ELA + +TE +V+VWF
Sbjct: 79 PEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWF 138
Query: 60 KNKRARCRRHQR 71
+N+RA+ R+ +R
Sbjct: 139 QNRRAKFRKQER 150
>gi|14249119 Rhox homeobox family, member 2 [Homo sapiens]
Length = 288
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 3 GPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNK 62
G +P N Q FT LQ++ELE +F+ Q+P RR LA ++ VTE V++WF+N+
Sbjct: 127 GLEPGNAQQPNVHA-FTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENR 185
Query: 63 RARCRRHQRELMLANEL 79
RA+ RRHQR LM N L
Sbjct: 186 RAKWRRHQRALMARNML 202
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 68.6 bits (166), Expect = 3e-12
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 2 EGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKN 61
E P + Q R +RT FT Q++ELE+ F+ +YPD+ TR E+A +TE +VRVWFKN
Sbjct: 84 EDPSKKKRQ-RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 142
Query: 62 KRARCRRHQR 71
+RA+ R+ +R
Sbjct: 143 RRAKWRKRER 152
>gi|24234711 paired-like homeodomain transcription factor 2
isoform a [Homo sapiens]
Length = 271
Score = 68.6 bits (166), Expect = 3e-12
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 2 EGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKN 61
E P + Q R +RT FT Q++ELE+ F+ +YPD+ TR E+A +TE +VRVWFKN
Sbjct: 31 EDPSKKKRQ-RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 89
Query: 62 KRARCRRHQR 71
+RA+ R+ +R
Sbjct: 90 RRAKWRKRER 99
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 68.6 bits (166), Expect = 3e-12
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 2 EGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKN 61
E P + Q R +RT FT Q++ELE+ F+ +YPD+ TR E+A +TE +VRVWFKN
Sbjct: 77 EDPSKKKRQ-RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 135
Query: 62 KRARCRRHQR 71
+RA+ R+ +R
Sbjct: 136 RRAKWRKRER 145
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 68.6 bits (166), Expect = 3e-12
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 7 ENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARC 66
E + R RT FT Q++ELE VF T YPD+ TR ELA + +TE +V+VWF+N+RA+
Sbjct: 94 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 153
Query: 67 RRHQR 71
R+ +R
Sbjct: 154 RKQER 158
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 68.2 bits (165), Expect = 4e-12
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 1 MEGPQPEN----MQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVR 56
+ G PE+ + R +RT FT Q++ELE+ F+ +YPD+ TR E+A +TE +VR
Sbjct: 48 LPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVR 107
Query: 57 VWFKNKRARCRRHQR 71
VWFKN+RA+ R+ +R
Sbjct: 108 VWFKNRRAKWRKRER 122
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 68.2 bits (165), Expect = 4e-12
Identities = 34/71 (47%), Positives = 43/71 (60%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 212 PLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRAR 271
Query: 66 CRRHQRELMLA 76
R+ LA
Sbjct: 272 WRKQAGANQLA 282
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 68.2 bits (165), Expect = 4e-12
Identities = 34/71 (47%), Positives = 43/71 (60%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 210 PLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRAR 269
Query: 66 CRRHQRELMLA 76
R+ LA
Sbjct: 270 WRKQAGANQLA 280
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 68.2 bits (165), Expect = 4e-12
Identities = 34/71 (47%), Positives = 43/71 (60%)
Query: 6 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 65
P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE +V+VWF N+RAR
Sbjct: 212 PLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRAR 271
Query: 66 CRRHQRELMLA 76
R+ LA
Sbjct: 272 WRKQAGANQLA 282
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 68.2 bits (165), Expect = 4e-12
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 12 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 71
R RT FT LQ+EELE VF+ T YPDV R +LA +TE +V+VWF+N+RA+ R+ +R
Sbjct: 133 RRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRER 192
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 68.2 bits (165), Expect = 4e-12
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 12 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 71
R RT FT Q+E LE++F+ T+YPDV TR +LA + + E+KV VWFKN+RA+ RR +R
Sbjct: 161 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR 220
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 67.8 bits (164), Expect = 5e-12
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 12 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 71
R RT FT Q+EELE F+ T YPDV TR ELA L +TE +V+VWF+N+RA+ R+ ++
Sbjct: 329 RRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 67.0 bits (162), Expect = 8e-12
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 12 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 71
R RT FT Q+EELE VF+ T YPDV R +LA +TE +V+VWF+N+RA+ R+ +R
Sbjct: 215 RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,988,880
Number of Sequences: 37866
Number of extensions: 203195
Number of successful extensions: 891
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 346
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.