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Search of human proteins with 239757693
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757693 PREDICTED: hypothetical protein XP_002345522 [Homo
sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757693 PREDICTED: hypothetical protein XP_002345522 [Homo ... 437 e-123
gi|54860079 nadrin isoform 1 [Homo sapiens] 47 2e-05
gi|54860105 nadrin isoform 2 [Homo sapiens] 47 2e-05
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 42 5e-04
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|150170670 piccolo isoform 2 [Homo sapiens] 40 0.002
gi|150378539 piccolo isoform 1 [Homo sapiens] 40 0.002
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 37 0.012
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 37 0.012
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 37 0.016
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 36 0.027
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 36 0.027
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens] 36 0.027
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 36 0.027
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 36 0.027
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 36 0.027
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 36 0.027
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 36 0.027
gi|52630419 sterol regulatory element binding transcription fact... 35 0.035
gi|22547195 sterol regulatory element binding transcription fact... 35 0.035
gi|22035602 mitogen-activated protein kinase kinase kinase kinas... 35 0.035
gi|165932383 hypothetical protein LOC388341 isoform 2 [Homo sapi... 35 0.035
gi|41352718 deltex homolog 1 [Homo sapiens] 35 0.035
gi|239754611 PREDICTED: hypothetical protein [Homo sapiens] 35 0.046
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 35 0.046
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 35 0.046
gi|49472835 bridging integrator 2 [Homo sapiens] 35 0.046
gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo ... 35 0.060
>gi|239757693 PREDICTED: hypothetical protein XP_002345522 [Homo
sapiens]
Length = 210
Score = 437 bits (1124), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MGSSQKGIACAGSSEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTP 60
MGSSQKGIACAGSSEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTP
Sbjct: 1 MGSSQKGIACAGSSEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTP 60
Query: 61 SSPAHLYGNGPGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRP 120
SSPAHLYGNGPGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRP
Sbjct: 61 SSPAHLYGNGPGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRP 120
Query: 121 GTNSRSARVQRARLSTGLLAPNDHGFQPASVRPTTMTPNRPPVSNCFSNREAAMTQLTTP 180
GTNSRSARVQRARLSTGLLAPNDHGFQPASVRPTTMTPNRPPVSNCFSNREAAMTQLTTP
Sbjct: 121 GTNSRSARVQRARLSTGLLAPNDHGFQPASVRPTTMTPNRPPVSNCFSNREAAMTQLTTP 180
Query: 181 LVTGDLRSSTIYGTGATSGSNHPLDRAAAK 210
LVTGDLRSSTIYGTGATSGSNHPLDRAAAK
Sbjct: 181 LVTGDLRSSTIYGTGATSGSNHPLDRAAAK 210
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 46.6 bits (109), Expect = 2e-05
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 22/145 (15%)
Query: 23 APEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHP---TPSSPAHLYGNGPGRTRAAAE 79
AP P PG+ PP G ++ ++ SP P +PS P G PG+ A ++
Sbjct: 637 APAPPKPGNP--PPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQPSAPSQ 694
Query: 80 RQS-HRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSARVQRARLSTGL 138
+ R+ S ++ + P P PP A+P S+ P +
Sbjct: 695 LSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNP---------------M 739
Query: 139 LAPNDHGF-QPASVRPTTMTPNRPP 162
P++HG QP+ P T TP P
Sbjct: 740 ALPSEHGLEQPSHTPPQTPTPPSTP 764
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 46.6 bits (109), Expect = 2e-05
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 22/145 (15%)
Query: 23 APEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHP---TPSSPAHLYGNGPGRTRAAAE 79
AP P PG+ PP G ++ ++ SP P +PS P G PG+ A ++
Sbjct: 559 APAPPKPGNP--PPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQPSAPSQ 616
Query: 80 RQS-HRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSARVQRARLSTGL 138
+ R+ S ++ + P P PP A+P S+ P +
Sbjct: 617 LSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNP---------------M 661
Query: 139 LAPNDHGF-QPASVRPTTMTPNRPP 162
P++HG QP+ P T TP P
Sbjct: 662 ALPSEHGLEQPSHTPPQTPTPPSTP 686
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 41.6 bits (96), Expect = 5e-04
Identities = 34/89 (38%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 39 QAGVTAVPVAKQGQLSSPHPTPSSPAH-LYGNGPGRTRAAAERQSH----RFRSRPGSVR 93
QA V A +LS P PSS G TR A R +H + +SRP VR
Sbjct: 245 QAAAGFVQTALARKLSPEAPAPSSATFGSTGRSEPETRETA-RSTHVVLEKAKSRPLRVR 303
Query: 94 MCDTPSPAPPPYASPRQRAARGSKFRPGT 122
P+ AP P+ S R+RA R K PGT
Sbjct: 304 DNSAPAKAPRPWPSLRERAIRRDKPAPGT 332
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 39.7 bits (91), Expect = 0.002
Identities = 48/168 (28%), Positives = 60/168 (35%), Gaps = 27/168 (16%)
Query: 11 AGSSEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNG 70
A + + W R P P + +P R AVP A TP P
Sbjct: 113 AAPTGRRWRRRPGPSPPLQPRSRHPHTRYP--RAVPEA----------TPLRPP------ 154
Query: 71 PGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSARVQ 130
PG A R R P R TP A PP PR RA R PG + R +
Sbjct: 155 PGTRPRAKSRPGCRSSPFPARSR---TPGEAGPPRGDPRPRAPR-----PGDHPRRSPAL 206
Query: 131 RARLSTGLLAPNDHGFQPASVRPTTMTPNRPPVSNCFSNREAAMTQLT 178
R S +P + A+ + TT P +PP C + RE M T
Sbjct: 207 RETPSLSPPSPGRRNGKRAAGKGTTPQP-QPPPPPCATRREEDMALRT 253
Score = 28.1 bits (61), Expect = 5.6
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 27 PHPGSTCYPPCRQAGV----TAVPVAKQGQLSSPHPTPSSPAHLYGNGPGRTRAAAERQS 82
P PG +PP +A V A P A L P +PA R RAAA
Sbjct: 52 PPPGFI-HPPSSRAAVHSRLRAAPAAAPRLL--PRVLAGAPARTGALAGSRLRAAAAAAH 108
Query: 83 HRFRSRPGSVRMCDTPSPAPPPYASPRQR 111
+ + P R P P+PP PR R
Sbjct: 109 DQEAAAPTGRRWRRRPGPSPP--LQPRSR 135
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 39.7 bits (91), Expect = 0.002
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 14 SEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGR 73
S+ P P+QP P PP +Q G +A P ++Q + P P PA PG
Sbjct: 471 SQLPGPAKPPPQQPGPAK---PPPQQPG-SAKPPSQQPGSTKPPPQQPGPAKPSPQQPGS 526
Query: 74 TRAAAERQSHRFRSRPGSVR-MCDTPSPAPP---PYASPRQRAARGSKFRPGTNSRSAR 128
T+ ++ +PGS + PSPA P P + G +P T S SA+
Sbjct: 527 TKPPSQ--------QPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAK 577
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 15 EKSWPRLHAPEQP--HPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPG 72
EKS P P +P P P +Q G PV G + P P PA G
Sbjct: 322 EKSQP---GPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGT-TKPPAQPLGPAKPPAQQTG 377
Query: 73 RTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQR 111
+ ++E+ + ++P V TP+ P P P Q+
Sbjct: 378 SEKPSSEQPGPKALAQPPGVG--KTPAQQPGPAKPPTQQ 414
Score = 28.1 bits (61), Expect = 5.6
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 26 QPHPGSTCYP--PCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGRTRAAAERQSH 83
QP P S P P +QA + P QG S P +PA AAE+
Sbjct: 951 QPGPHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKLEP 1010
Query: 84 RFRSRPGSVRMCDTPSPAPP 103
+ P +V+ +T PP
Sbjct: 1011 KAEQAP-TVKRTETEKKPPP 1029
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 39.7 bits (91), Expect = 0.002
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 14 SEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGR 73
S+ P P+QP P PP +Q G +A P ++Q + P P PA PG
Sbjct: 471 SQLPGPAKPPPQQPGPAK---PPPQQPG-SAKPPSQQPGSTKPPPQQPGPAKPSPQQPGS 526
Query: 74 TRAAAERQSHRFRSRPGSVR-MCDTPSPAPP---PYASPRQRAARGSKFRPGTNSRSAR 128
T+ ++ +PGS + PSPA P P + G +P T S SA+
Sbjct: 527 TKPPSQ--------QPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAK 577
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 15 EKSWPRLHAPEQP--HPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPG 72
EKS P P +P P P +Q G PV G + P P PA G
Sbjct: 322 EKSQP---GPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGT-TKPPAQPLGPAKPPAQQTG 377
Query: 73 RTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQR 111
+ ++E+ + ++P V TP+ P P P Q+
Sbjct: 378 SEKPSSEQPGPKALAQPPGVG--KTPAQQPGPAKPPTQQ 414
Score = 28.1 bits (61), Expect = 5.6
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 26 QPHPGSTCYP--PCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGRTRAAAERQSH 83
QP P S P P +QA + P QG S P +PA AAE+
Sbjct: 951 QPGPHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKLEP 1010
Query: 84 RFRSRPGSVRMCDTPSPAPP 103
+ P +V+ +T PP
Sbjct: 1011 KAEQAP-TVKRTETEKKPPP 1029
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 39.3 bits (90), Expect = 0.002
Identities = 41/133 (30%), Positives = 53/133 (39%), Gaps = 28/133 (21%)
Query: 21 LHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTP--SSPAHLYGNGPGRT---- 74
LH+P +P P P R PHP AH G G GR
Sbjct: 148 LHSPREPTPPGRLSAPPRHG---------------PHPQSFRRPSAHPPGRGSGRVPRGQ 192
Query: 75 --RAAAERQSHRFRSRPGSVRMC---DTPSPAPPPYASPRQRAARGSKFRPGTNSRSAR- 128
+ A E++S F + GSV P+ AP P R+ AA GS+ R G +AR
Sbjct: 193 PEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARG 252
Query: 129 -VQRARLSTGLLA 140
Q+ L+ LLA
Sbjct: 253 SAQQPPLARLLLA 265
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 39.3 bits (90), Expect = 0.002
Identities = 41/133 (30%), Positives = 53/133 (39%), Gaps = 28/133 (21%)
Query: 21 LHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTP--SSPAHLYGNGPGRT---- 74
LH+P +P P P R PHP AH G G GR
Sbjct: 148 LHSPREPTPPGRLSAPPRHG---------------PHPQSFRRPSAHPPGRGSGRVPRGQ 192
Query: 75 --RAAAERQSHRFRSRPGSVRMC---DTPSPAPPPYASPRQRAARGSKFRPGTNSRSAR- 128
+ A E++S F + GSV P+ AP P R+ AA GS+ R G +AR
Sbjct: 193 PEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARG 252
Query: 129 -VQRARLSTGLLA 140
Q+ L+ LLA
Sbjct: 253 SAQQPPLARLLLA 265
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 37.0 bits (84), Expect = 0.012
Identities = 46/177 (25%), Positives = 64/177 (36%), Gaps = 27/177 (15%)
Query: 4 SQKGIACAGSSEKSWPR--------LHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSS 55
S+ G A G + P+ + PEQ G C Q G A++G
Sbjct: 785 SKSGAASLGEEARDTPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRG---- 840
Query: 56 PHPTPSSPAHLYGNGPGRTRAAAERQS---------HRFRSR-PGSVRMCDTPSPAPPPY 105
P P S Y P R R +R+S H+ +R PG T P P P
Sbjct: 841 PSPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPS 900
Query: 106 ASPRQRAARGSKFRPGTNSRSARVQRARLSTGLLAPNDHGFQPAS-VRPTTMTPNRP 161
P A+R S G SR ++ S G G + AS V P+++ + P
Sbjct: 901 PGPNSGASRRSSASQGAGSRGLSEEKTLRSGG----GPQGQEEASGVSPSSLPRSSP 953
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 37.0 bits (84), Expect = 0.012
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 4 SQKGIACAGSSEKSWPRLHAP-EQPHPGSTCYP-PCRQAGVTAVPVAKQGQLSSPHPTPS 61
S K A S SW R +P P PG T P P G TA P + + +PS
Sbjct: 460 SPKSKARPSSPSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASPKGRVRRKEEAKESPS 519
Query: 62 SPAHLYGNGPGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQR 111
+ A + RA+ E++S + P S PSPAP P +P Q+
Sbjct: 520 A-AGPEDKSQSKRRASNEKES----AAPAS----PAPSPAPSPTPAPPQK 560
Score = 27.3 bits (59), Expect = 9.6
Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 46 PVAKQGQLSSPHPTPSSPAHLYGNGPGRTRAAAER--QSHRFRSRPGSVRMCDTPSPAPP 103
P + P P P + L + P T A + S + P S P PAPP
Sbjct: 23 PEPRPSPEGDPSPPPPPMSALVPDTPPDTPPAMKNATSSKQLPLEPESPSGQVGPRPAPP 82
Query: 104 PYASPRQRAARGSKFRPGTNSRSARVQR 131
SP A P R AR R
Sbjct: 83 QEESPSSEAKSRGPTPPAMGPRDARPPR 110
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 36.6 bits (83), Expect = 0.016
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 11 AGSSEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNG 70
A +S P + P QP P + PP + + +SP P P +
Sbjct: 1005 ADKRRRSLPSSYRPAQPSPSAVQTPPSPPVSPRVLSPPTTKRRTSPPHQPKLPNPPPESA 1064
Query: 71 PGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSK 117
P + + + H S P S+ PSP+PP S + R S+
Sbjct: 1065 PAQCKVPSPPTQHPEASPPFSI-----PSPSPPMSPSQEHKETRDSE 1106
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 35.8 bits (81), Expect = 0.027
Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 24/177 (13%)
Query: 3 SSQKGIACAGSSEKSWPRLHAPEQPHPGSTCYPP-------CRQAGVTAVPVAKQGQLSS 55
+ +K + A S +S + AP H T +PP C A +G+++
Sbjct: 133 NGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAG 192
Query: 56 ----PHPT---PSSPAHLYGNGPGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPP----- 103
PH P SP GPG + R RPG R PSP PP
Sbjct: 193 LDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGG-LRKRPGITRTEGNPSPRPPRRLTL 251
Query: 104 PYASPRQRAARGSKFRPGTNSRSARVQRARLSTGLLAPNDHGFQPASVRPTTMTPNR 160
P PR AR + R + + RV+ A ++G P + P + P +
Sbjct: 252 PEDHPRLANARRRRKR----ALATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEK 304
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 35.8 bits (81), Expect = 0.027
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 20/166 (12%)
Query: 19 PRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSS--PHPTPSSPAHLYGNGPGRTRA 76
P+ PE P P + PP T+ VA + SS P PTPS + G
Sbjct: 864 PQSQPPEGPLPPAPHLPP----SSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQG---- 915
Query: 77 AAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSARVQR-ARLS 135
H+ + P ++ + P PA PP PR + F P A ++R ++
Sbjct: 916 -----PHKSPTPPPTLHL--VPEPAAPPPPPPRTFQMVTTPF-PALPQPKALLERFHQVP 967
Query: 136 TGLLAPNDHGFQPASVR-PTTMTPNRPPVSNCFSNREAAMTQLTTP 180
+G++ N G PA+ + T++ P P ++ + +A T P
Sbjct: 968 SGIILQNKAGGAPAAPQTSTSLGPLTSPAASVLVSGQAPSGTPTAP 1013
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 26 QPHPGSTCYPPCRQAGVTAVPVAKQGQ--LSSPHPTPSSPAHLYGNGPGRTRAAAERQSH 83
Q PG+ P +T + K GQ + S P P+ A+++ P T AA Q
Sbjct: 381 QGEPGALPQQPKAPQNLTFMAAGKAGQNVVLSGFPAPALQANVFKQPPATTTGAAPPQPP 440
Query: 84 RFRSRPGSVRMCDTPS 99
S+P SV + + S
Sbjct: 441 GALSKPMSVHLLNQGS 456
Score = 30.4 bits (67), Expect = 1.1
Identities = 42/128 (32%), Positives = 47/128 (36%), Gaps = 35/128 (27%)
Query: 15 EKSWPRLHAPEQPH---PGSTCY--PPCRQAGVTAVPVAKQGQL--------SSPHPTPS 61
E+S L A E PH P S PP Q A PVAK L +SP P P
Sbjct: 703 ERSQQPLSA-EGPHLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASPAPAPQ 761
Query: 62 SPAHLYGNGPGRTRAAA------------------ERQSHRFRSRPGSV-RMCDTP--SP 100
PA GPG + + + R R SRP SV R P P
Sbjct: 762 IPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHP 821
Query: 101 APPPYASP 108
PPP A P
Sbjct: 822 CPPPQAPP 829
>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
Length = 644
Score = 35.8 bits (81), Expect = 0.027
Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 26/204 (12%)
Query: 4 SQKGIACAGSSEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSP 63
SQ+ + + S + + P +C PPC + +P ++ G LSS +PSS
Sbjct: 99 SQEDLEARNGTSPSRGSVQSEGPGAPAHSCSPPCLSTSLQEIPKSR-GVLSSERGSPSSG 157
Query: 64 AHLYGNGPGRTRAAAERQSHRFRSRPG-SVRMCDTPSPAPPPYASPRQRAARGSKFRPGT 122
GN +++ HR + G S R+ P PPP S
Sbjct: 158 ----GNPLSGVASSSPNLPHRDAAVAGSSPRLPSLLPPRPPPALS--------------L 199
Query: 123 NSRSARVQRARLSTGLLAPNDHGFQPASVRP-TTMTPNRP----PVSNCFSNREAAMTQL 177
+ S ++ A LA QP VR +++ P RP +C + L
Sbjct: 200 DIASDSLRTANKVDSDLADYKLRAQPLLVRAHSSLGPGRPRSPLACDDCSLRSAKSSFSL 259
Query: 178 TTPLVTGDLRS-STIYGTGATSGS 200
P+ + D+RS S + G+ SG+
Sbjct: 260 LAPIRSKDVRSRSYLEGSLLASGA 283
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 35.8 bits (81), Expect = 0.027
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 35 PPCRQA--GVTAVPVAKQG---QLSSPHPTPSSPAHLYGNGPGRTRAAAERQS------H 83
PP QA GVT P + QL +P PTPS+ A P ++A + Q+ H
Sbjct: 184 PPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPH 243
Query: 84 RFRSRPGSVRMCDTPSPAPPPYASPRQ--RAARGSKFRPGTNSRS 126
+ ++ PSP PPP+ SP + GS +P S +
Sbjct: 244 THIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 288
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.8 bits (81), Expect = 0.027
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 35 PPCRQA--GVTAVPVAKQG---QLSSPHPTPSSPAHLYGNGPGRTRAAAERQS------H 83
PP QA GVT P + QL +P PTPS+ A P ++A + Q+ H
Sbjct: 738 PPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPH 797
Query: 84 RFRSRPGSVRMCDTPSPAPPPYASPRQ--RAARGSKFRPGTNSRS 126
+ ++ PSP PPP+ SP + GS +P S +
Sbjct: 798 THIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 842
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.8 bits (81), Expect = 0.027
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 35 PPCRQA--GVTAVPVAKQG---QLSSPHPTPSSPAHLYGNGPGRTRAAAERQS------H 83
PP QA GVT P + QL +P PTPS+ A P ++A + Q+ H
Sbjct: 738 PPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPH 797
Query: 84 RFRSRPGSVRMCDTPSPAPPPYASPRQ--RAARGSKFRPGTNSRS 126
+ ++ PSP PPP+ SP + GS +P S +
Sbjct: 798 THIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 842
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.8 bits (81), Expect = 0.027
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 12/193 (6%)
Query: 19 PRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHP---TPSSPAHLYGNGPGRTR 75
PR P P P R+ + P ++ + +P P TPS P P R
Sbjct: 542 PRGRRRRSPSPP----PTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYS 597
Query: 76 AAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSARVQRARLS 135
+R R+ P R +P P P ASP R P RS+ V + R S
Sbjct: 598 PPIQR---RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRR-S 653
Query: 136 TGLLAPNDHGFQPASVRPTTMTPNRPPVSNCFSNREAAMTQLTTPLVTGDLRSSTIYGTG 195
L + + G P+ +P +P + S R A ++P SS+
Sbjct: 654 PSLSSKHRKGSSPSRSTREARSP-QPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQ 712
Query: 196 ATSGSNHPLDRAA 208
+ S S P+ R +
Sbjct: 713 SPSPSTRPIRRVS 725
Score = 28.1 bits (61), Expect = 5.6
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 71 PGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRS-ARV 129
P TR R+ HR RSR S R PSP P SPR+R P + RS + V
Sbjct: 293 PSHTRP---RRRHRSRSRSYSPRR--RPSPRRRP--SPRRRTPPRRMPPPPRHRRSRSPV 345
Query: 130 QRARLSTGLLAPNDHGFQPASVRPTTMTPNRPP 162
+R R S+ L+ + +S + P +PP
Sbjct: 346 RRRRRSSASLSGSS---SSSSSSRSRSPPKKPP 375
Score = 28.1 bits (61), Expect = 5.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 11 AGSSE---KSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLY 67
+GS E K P +P Q ST + P AVPV K SP P+PS P +
Sbjct: 754 SGSPEPAAKKPPAPPSPVQSQSPSTNWSP-------AVPVKKA---KSPTPSPSPPRNSD 803
Query: 68 GNGPGRTRAAAERQSHR 84
G G+ + + + H+
Sbjct: 804 QEGGGKKKKKKKDKKHK 820
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 35.8 bits (81), Expect = 0.027
Identities = 60/229 (26%), Positives = 83/229 (36%), Gaps = 48/229 (20%)
Query: 10 CAGSS--EKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLY 67
C+ SS E + P++ P P S PPCR T + G S P P S + +
Sbjct: 121 CSHSSPGEGASPQMFHTVSPGPPSA-RPPCRVPPTTPL----NGGPGSLPPEPPSVSQAF 175
Query: 68 GN--GPGRT--RAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTN 123
GPG A+ S P + + PSPAPPP P + + G
Sbjct: 176 PTLAGPGGLFPPRLADPVPSGGSSSPRFLPRGNAPSPAPPP---PPAISLNAPSYNWGAA 232
Query: 124 SRSARVQRARLSTGLLAPNDHGFQPASVRPTTMTPNRPPVSNC----------------- 166
RS+ L P+D G PA ++ P+ PP+ +C
Sbjct: 233 LRSS-----------LVPSDLGSPPAP-HASSSPPSDPPLFHCSDALTPPPLPPSNNLPA 280
Query: 167 ----FSNREAAMTQLTTPLVTGDLRSS-TIYGTGATSGSNHPLDRAAAK 210
S + + PLV G L + T+ G GA L AAAK
Sbjct: 281 HPGPASQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAK 329
>gi|52630419 sterol regulatory element binding transcription factor
1 isoform a [Homo sapiens]
Length = 1177
Score = 35.4 bits (80), Expect = 0.035
Identities = 42/155 (27%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 23 APEQPHPGSTCYPPCRQAGVTAV----PVAKQGQLSSPHPTPSSPAHLYGN------GPG 72
+P+ PGS PP + P A LS P P P+ P +Y + GPG
Sbjct: 93 SPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSPLSPPQPAPT-PLKMYPSMPAFSPGPG 151
Query: 73 RTRAAAER---QSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSARV 129
+ Q+ + PG++ P+PAPP ++S G PG
Sbjct: 152 IKEESVPLSILQTPTPQPLPGALLPQSFPAPAPPQFSS---TPVLGYPSPPG-------- 200
Query: 130 QRARLSTGLLAPNDHGFQPASVRPTTMTPNRPPVS 164
STG +P + QP P P PPVS
Sbjct: 201 ---GFSTG--SPPGNTQQPLPGLPLASPPGVPPVS 230
>gi|22547195 sterol regulatory element binding transcription factor
1 isoform b [Homo sapiens]
Length = 1147
Score = 35.4 bits (80), Expect = 0.035
Identities = 42/155 (27%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 23 APEQPHPGSTCYPPCRQAGVTAV----PVAKQGQLSSPHPTPSSPAHLYGN------GPG 72
+P+ PGS PP + P A LS P P P+ P +Y + GPG
Sbjct: 63 SPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSPLSPPQPAPT-PLKMYPSMPAFSPGPG 121
Query: 73 RTRAAAER---QSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSARV 129
+ Q+ + PG++ P+PAPP ++S G PG
Sbjct: 122 IKEESVPLSILQTPTPQPLPGALLPQSFPAPAPPQFSS---TPVLGYPSPPG-------- 170
Query: 130 QRARLSTGLLAPNDHGFQPASVRPTTMTPNRPPVS 164
STG +P + QP P P PPVS
Sbjct: 171 ---GFSTG--SPPGNTQQPLPGLPLASPPGVPPVS 200
>gi|22035602 mitogen-activated protein kinase kinase kinase kinase 4
isoform 1 [Homo sapiens]
Length = 1166
Score = 35.4 bits (80), Expect = 0.035
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 21/141 (14%)
Query: 15 EKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGRT 74
E+S P HAPE Y P +A V + + S +P L G+G +
Sbjct: 514 ERSKPSFHAPEP----KAHYEPADRAREVPVRTTSRSPVLSRRDSP-----LQGSGQQNS 564
Query: 75 RAAAERQS------------HRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGT 122
+A + + RPGS + + P + P ++ G +FR +
Sbjct: 565 QAGQRNSTSSIEPRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRS 624
Query: 123 NSRSARVQRARLSTGLLAPND 143
+S+S RL + P D
Sbjct: 625 SSKSEGSPSQRLENAVKKPED 645
>gi|165932383 hypothetical protein LOC388341 isoform 2 [Homo
sapiens]
Length = 212
Score = 35.4 bits (80), Expect = 0.035
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 21 LHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGRTRAAAER 80
+H P+ P PP + +G PV L P P L+G GR R A
Sbjct: 120 IHCPKPPQGCPGRKPPRQHSG----PVGNPTDLPRPGAGDQLPTALWG--AGRQRGAG-- 171
Query: 81 QSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSAR 128
HR R G T PAPP + G++++P R+AR
Sbjct: 172 -LHRPHGRHGPAAAASTQHPAPPHHT--------GTQWQPVDPGRAAR 210
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 35.4 bits (80), Expect = 0.035
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 16 KSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGRTR 75
+SWP + QP C + +A Q + + P P P P G PG
Sbjct: 188 QSWPVGASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAP-PLPPPPPPGGPPG--- 243
Query: 76 AAAERQSHRFRSRPGSVRMCDTPS-PAPPPYASPRQRAARGSKFRPGTNS 124
A A R S F P+ PAPPP A PR A G PG N+
Sbjct: 244 ALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGARTPGQNN 293
>gi|239754611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 35.0 bits (79), Expect = 0.046
Identities = 39/135 (28%), Positives = 48/135 (35%), Gaps = 10/135 (7%)
Query: 12 GSSEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGP 71
GS EK P P PG+ + P Q V + P + Q +P P
Sbjct: 16 GSGEK------VPTFPEPGAP-FMPRPQPVVVSTPCSVQ--CHTPELERGGPGPTDRRTS 66
Query: 72 GRTRAA-AERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGTNSRSARVQ 130
R RAA S RP + R P+PA PP +P A G R R A
Sbjct: 67 RRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAG 126
Query: 131 RARLSTGLLAPNDHG 145
+AR G P G
Sbjct: 127 QARHGAGNRHPPRQG 141
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 35.0 bits (79), Expect = 0.046
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 42 VTAVPVAKQGQLSSPHPTPSSPAHLYGNGPGRTRAAAERQSHRFRSRPGSVRMCDTPSPA 101
V +VP ++ SSP P +PA + PG +R A + G+ + P +
Sbjct: 765 VQSVPAGRRSPTSSPTPQRRAPA-VPPARPG-SRGPAPGPPPAGSALGGAPPVPSRPGAS 822
Query: 102 PPPYASPRQRAARGSKFRPGTNSRSARVQRAR 133
P P+ P Q +R ++ PG SRS + +R
Sbjct: 823 PDPFGPPPQVPSRPNRAPPGVPSRSGQASPSR 854
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 35.0 bits (79), Expect = 0.046
Identities = 40/134 (29%), Positives = 49/134 (36%), Gaps = 15/134 (11%)
Query: 9 ACAGSSEKSWPRLHAPEQPHPGSTCYPPCRQA------------GVTAVPVAKQGQLSSP 56
A + SS S H P Q S P A GV P A G+L P
Sbjct: 4 ASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQP 63
Query: 57 HPTPSSPAHLYGN--GPGRTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYASPRQRAAR 114
L G+ P R AA S PG+ R SP PP A+P ++A R
Sbjct: 64 IRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQAPR 123
Query: 115 GSKFRPGTNSRSAR 128
+K RP + S R
Sbjct: 124 -AKGRPRRSPESHR 136
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 35.0 bits (79), Expect = 0.046
Identities = 42/159 (26%), Positives = 55/159 (34%), Gaps = 17/159 (10%)
Query: 15 EKSWPRLHAPEQPHPGSTCYPPCR-QAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGPG- 72
EK + E+ P C P + Q T Q ++ TPS L +G
Sbjct: 322 EKEGSEASSSEEDEPLPACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPSGQPS 381
Query: 73 --------RTRAAAERQSHRFRSRPGSVRMCDTPSPAPPPYA--SPRQRAARGSKFRPGT 122
RTR A+E S + + R R PS PPP A SPR + +
Sbjct: 382 SSATEVVLRTRTASEG-SEQPKKRASIQRTSAPPSRPPPPRATASPRPSSGNIPSSPTAS 440
Query: 123 NSRSARVQRARLSTGLLAPNDHGFQPASVRPTTMTPNRP 161
S RA L TG +P V P P +P
Sbjct: 441 GGGSPTSPRASLGTGTASPR----TSLEVSPNPEPPEKP 475
>gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo
sapiens]
Length = 178
Score = 34.7 bits (78), Expect = 0.060
Identities = 41/143 (28%), Positives = 50/143 (34%), Gaps = 26/143 (18%)
Query: 12 GSSEKSWPRLHAPEQPHPGSTCYPPCRQAGVTAVPVAKQGQLSSPHPTPSSPAHLYGNGP 71
GS EK P P PG+ + P Q V + P + Q TP L GP
Sbjct: 16 GSGEK------VPTFPEPGAP-FMPRPQPVVVSTPCSVQCH------TPE----LERGGP 58
Query: 72 GRTRAAAERQ---------SHRFRSRPGSVRMCDTPSPAPPPYASPRQRAARGSKFRPGT 122
G T R+ S RP + R P+PA PP +P A G R
Sbjct: 59 GPTDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHG 118
Query: 123 NSRSARVQRARLSTGLLAPNDHG 145
R A +AR G P G
Sbjct: 119 AQRGAPAGQARHGAGNRHPPRQG 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,902,725
Number of Sequences: 37866
Number of extensions: 663046
Number of successful extensions: 3671
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 3236
Number of HSP's gapped (non-prelim): 860
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.