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Search of human proteins with 239757644
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757644 PREDICTED: hypothetical protein [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757644 PREDICTED: hypothetical protein [Homo sapiens] 221 1e-58
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 32 0.11
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 32 0.11
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 31 0.18
gi|239754514 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|157277988 phosphodiesterase 4D isoform 1 [Homo sapiens] 30 0.31
gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens] 30 0.31
gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens] 30 0.31
gi|33286446 opioid growth factor receptor [Homo sapiens] 30 0.41
gi|115430231 REC8 homolog [Homo sapiens] 30 0.41
gi|115430229 REC8 homolog [Homo sapiens] 30 0.41
gi|239755457 PREDICTED: similar to patatin-like phospholipase do... 29 0.70
gi|32698724 patatin-like phospholipase domain containing 2 [Homo... 29 0.70
gi|148226288 lipocalin-like 1 [Homo sapiens] 29 0.70
gi|15721939 metastatic lymph node 51 [Homo sapiens] 29 0.70
gi|143770741 glycoprotein VI (platelet) isoform 1 [Homo sapiens] 29 0.91
gi|143770755 glycoprotein VI (platelet) isoform 2 [Homo sapiens] 29 0.91
gi|169209134 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] 29 0.91
gi|47825361 non-specific cytotoxic cell receptor protein 1 homol... 29 0.91
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 28 1.2
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 28 1.2
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 28 1.2
gi|46195719 olfactomedin-like 2B [Homo sapiens] 28 1.2
gi|222352166 nel-like 1 isoform 2 precursor [Homo sapiens] 28 1.6
gi|222352164 nel-like 1 isoform 1 precursor [Homo sapiens] 28 1.6
gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo ... 28 1.6
gi|149944560 forkhead box D4-like 2 [Homo sapiens] 28 1.6
gi|82546824 forkhead box K1 [Homo sapiens] 28 1.6
>gi|239757644 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 221 bits (562), Expect = 1e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MSDSVLYCTPRSCPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPGVQLLRSLHHL 60
MSDSVLYCTPRSCPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPGVQLLRSLHHL
Sbjct: 1 MSDSVLYCTPRSCPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPGVQLLRSLHHL 60
Query: 61 HLHLLERVRVRTEASGRRPGGGLGDLPPQVWGRRGGRHLGV 101
HLHLLERVRVRTEASGRRPGGGLGDLPPQVWGRRGGRHLGV
Sbjct: 61 HLHLLERVRVRTEASGRRPGGGLGDLPPQVWGRRGGRHLGV 101
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 13 CPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPGVQLLRS 56
CPS + P PAPQ PAAPA P P+T + LRS
Sbjct: 187 CPSPAQSPRSASPPGPAPQHPAAPASPPR---PSTAGAIPPLRS 227
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 13 CPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPGVQLLRS 56
CPS + P PAPQ PAAPA P P+T + LRS
Sbjct: 187 CPSPAQSPRSASPPGPAPQHPAAPASPPR---PSTAGAIPPLRS 227
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 13 CPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPGVQLLRS 56
CPS + P PAPQ PAAPA P P+T + LRS
Sbjct: 187 CPSPAQSPRSASPPGPAPQHPAAPASPPR---PSTAGAIPPLRS 227
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 9 TPRSCPSHLRGQACRWEPIPAPQCPAA-PAGPTPLQFPATLPGVQLLRSLHHL 60
+P+S P +R Q +P+PAP P P P P + P P +L R +HH+
Sbjct: 529 SPKSSPCMVRKQD---KPLPAPPPPLRDPPPPPPERPPPIPPDNRLSRHIHHV 578
>gi|239754514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 10 PRSCPSHLRGQACRWEPIPAPQCP-----AAPAGPTPLQFP 45
P S S RG + R PAP+CP P GPT +FP
Sbjct: 21 PPSPDSSSRGGSARRRAAPAPRCPQRLGLLRPPGPTNSEFP 61
>gi|157277988 phosphodiesterase 4D isoform 1 [Homo sapiens]
Length = 809
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 26 PIPAPQCPAAPAGPTPLQFPATLPG 50
P P PQCP P P PL P PG
Sbjct: 65 PQPQPQCPLQPPPPPPLPPPPPPPG 89
>gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]
Length = 1523
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 17 LRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPGV 51
L G A R +PAP+ P PA P+ Q P PG+
Sbjct: 1339 LHGSAFR-PSLPAPESPGLPAHPSNPQLPEARPGI 1372
>gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]
Length = 1518
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 17 LRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPGV 51
L G A R +PAP+ P PA P+ Q P PG+
Sbjct: 1334 LHGSAFR-PSLPAPESPGLPAHPSNPQLPEARPGI 1367
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 28 PAPQCPAAPAGPTPLQFPATLPGVQLLRSLHHLHLHLLERVRVRTEASGRRPGGGLGDLP 87
P P+ PA PAG P + P+ PG E +E G RP G GD P
Sbjct: 562 PGPR-PAGPAGDEPAESPSETPGPSPAGPTRD------EPAESPSETPGPRPAGPAGDEP 614
Query: 88 PQ 89
+
Sbjct: 615 AE 616
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 28 PAPQCPAAPAGPTPLQFPATLPGVQLLRSLHHLHLHLLERVRVRTEASGRRPGGGLGDLP 87
P P PA PAG P + P+ PG + E +E G RP G GD P
Sbjct: 522 PGPS-PAGPAGDEPAESPSETPGPRPAGPAGD------EPAESPSETPGPRPAGPAGDEP 574
Query: 88 PQ 89
+
Sbjct: 575 AE 576
>gi|115430231 REC8 homolog [Homo sapiens]
Length = 547
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 24 WEPIPAPQCPAAPAGP----TPLQFPATLPGVQLLRSLHHLH 61
W + AP+ PA P P P++ P LP L SL +H
Sbjct: 442 WPEVEAPEAPALPVVPELPEVPMEMPLVLPPELELLSLEAVH 483
>gi|115430229 REC8 homolog [Homo sapiens]
Length = 547
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 24 WEPIPAPQCPAAPAGP----TPLQFPATLPGVQLLRSLHHLH 61
W + AP+ PA P P P++ P LP L SL +H
Sbjct: 442 WPEVEAPEAPALPVVPELPEVPMEMPLVLPPELELLSLEAVH 483
>gi|239755457 PREDICTED: similar to patatin-like phospholipase
domain containing 2 [Homo sapiens]
Length = 226
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 6 LYCTPRSCPSHLRGQACRWEPIPAPQCPAA----PAGPTPL 42
L+CT + P +P PAP PA+ PAGP PL
Sbjct: 169 LFCTNVAFPPEALRMRAPADPAPAPADPASPQHQPAGPAPL 209
>gi|32698724 patatin-like phospholipase domain containing 2 [Homo
sapiens]
Length = 504
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 6 LYCTPRSCPSHLRGQACRWEPIPAPQCPAAP----AGPTPL 42
L+CT + P +P PAP PA+P AGP PL
Sbjct: 447 LFCTNVAFPPEALRMRAPADPAPAPADPASPQHQLAGPAPL 487
>gi|148226288 lipocalin-like 1 [Homo sapiens]
Length = 164
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 19 GQACRWEPIPAPQCPAAP--AGPTP 41
G C W +PAP CP+ P A P P
Sbjct: 138 GSWCLWPRVPAPPCPSLPLFAPPAP 162
>gi|15721939 metastatic lymph node 51 [Homo sapiens]
Length = 703
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 75 SGRRPGGGLGDLPPQVWGRRGGRHL 99
SG GGG G LP Q GR G HL
Sbjct: 37 SGSAGGGGSGSLPSQRGGRTGALHL 61
>gi|143770741 glycoprotein VI (platelet) isoform 1 [Homo sapiens]
Length = 620
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 26 PIPAPQCPAAPAGPTPLQFPATL-----PGVQLLR 55
P+P P A P+ PL+ P TL PGV L R
Sbjct: 24 PLPKPSLQALPSSLVPLEKPVTLRCQGPPGVDLYR 58
>gi|143770755 glycoprotein VI (platelet) isoform 2 [Homo sapiens]
Length = 339
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 26 PIPAPQCPAAPAGPTPLQFPATL-----PGVQLLR 55
P+P P A P+ PL+ P TL PGV L R
Sbjct: 24 PLPKPSLQALPSSLVPLEKPVTLRCQGPPGVDLYR 58
>gi|169209134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 28 PAPQCPAAPAGPTPLQFPATLPGVQLLRSLHHLHLHLLERVRVRTEASGRRPG 80
PAP+ PAAPA P P+ G+ LR+ H + + ++ + R PG
Sbjct: 28 PAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQLRQLSCALTVRLPG 80
>gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]
Length = 1164
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 26 PIPAPQCPAAPAGPTPLQFPATLPG 50
P P P PA+P GPT PA L G
Sbjct: 378 PEPGPTGPASPVGPTSSTGPALLTG 402
>gi|47825361 non-specific cytotoxic cell receptor protein 1
homolog [Homo sapiens]
Length = 275
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 19 GQACRWEPIPAPQCPAAPAGPTPLQFPATLP 49
G A E P+P+ P+ P P PL P +LP
Sbjct: 18 GPASLQELPPSPRSPSPPPSPPPLPSPPSLP 48
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 25 EPIPAPQCPAAPAGPTPLQFPATLPGVQLLRSLHHLHLHLLERV 68
EP+P P P P P PL P ++L + L+ERV
Sbjct: 887 EPVPGPMTPTQP--PPPLSLPPARSESEVLEEISRACETLVERV 928
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 10 PRSCPSHLRGQACRWEPIPAPQCPAAPA-----GPTPLQFPATLPGVQLLRSLHHLHLHL 64
P++ P +RG + + P+P +PA GP P + PA P L R L
Sbjct: 1062 PQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPCLRRGA--AAADL 1119
Query: 65 LERVRVRTEASGRRPGGGLGDLPP 88
L + PGGG L P
Sbjct: 1120 LSSSPESQHGGTQSPGGGQPLLQP 1143
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 10 PRSCPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPA 46
P S + R A WE AP+ A PA P+P PA
Sbjct: 314 PTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPA 350
>gi|46195719 olfactomedin-like 2B [Homo sapiens]
Length = 750
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 28 PAPQCPAA---------PAGPTPLQFPATLPGVQLLRSLHHLHLHLLERVRVRTEASGRR 78
P+PQ PA PA P P PA P L+ ++H + + VRT++ G+
Sbjct: 412 PSPQVPATTVAHTATQQPAAPAP---PAVSPREALMEAMHTVP---VPPTTVRTDSLGKD 465
Query: 79 PGGGLGDLP 87
G G P
Sbjct: 466 APAGWGTTP 474
>gi|222352166 nel-like 1 isoform 2 precursor [Homo sapiens]
Length = 763
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 1 MSDSVLYCTPRSCPSHLRGQACRWEPIPAPQC 32
MS L C+P S P H+ GQ C+ + P+C
Sbjct: 307 MSCPPLNCSPDSLPVHIAGQCCK---VCRPKC 335
>gi|222352164 nel-like 1 isoform 1 precursor [Homo sapiens]
Length = 810
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 1 MSDSVLYCTPRSCPSHLRGQACRWEPIPAPQC 32
MS L C+P S P H+ GQ C+ + P+C
Sbjct: 307 MSCPPLNCSPDSLPVHIAGQCCK---VCRPKC 335
>gi|239757591 PREDICTED: hypothetical protein XP_002345493 [Homo
sapiens]
Length = 598
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 2 SDSVLYCTPRSCPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPG 50
S L TP+ P G CR P + P +PA P+P FPA L G
Sbjct: 471 SSETLAHTPQCAP----GGGCR-PPRLKSERPRSPAHPSPSAFPALLCG 514
>gi|149944560 forkhead box D4-like 2 [Homo sapiens]
Length = 416
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 26 PIPAPQCPA-APAGPTPLQFPATLPGVQLLRSLH-HLHLHLLERVRVRTEASGRRPGGGL 83
P P P A AP P P +P T PG + LH H +LL RV A + G L
Sbjct: 231 PHPGPLLGAPAPPQPVPGAYPNTAPGRRPYALLHPHPLRYLLLSARVYAGAPKKAEGADL 290
Query: 84 GDLPP 88
P
Sbjct: 291 ATPAP 295
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 8 CTPRSCPSHLRGQACRWEPIPAPQCPAAPAGPTPLQFPATLPG 50
C+P C + P PAP P P GP P P PG
Sbjct: 21 CSPVLCAAAAAAAFPAAAPPPAPAQPQPPPGPPPPPPPPLPPG 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.142 0.487
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,663,788
Number of Sequences: 37866
Number of extensions: 313075
Number of successful extensions: 2502
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 2346
Number of HSP's gapped (non-prelim): 252
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.