Guide to the Human Genome
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Name: LOC100292401 Sequence: fasta or formatted (211aa) NCBI GI: 239757493
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         23           3
 C cysteine            2.4          5           1
 D aspartate           1.9          4           1
 E glutamate           1.4          3           1
 F phenylalanine       2.4          5           2
 G glycine            10.9         23           2
 H histidine           1.4          3           1
 I isoleucine          4.7         10           2
 K lysine              1.4          3           1
 L leucine            14.2         30           2
 M methionine          0.9          2           1
 N asparagine          0.0          0           0
 P proline            11.4         24           2
 Q glutamine           3.3          7           1
 R arginine           10.9         23           1
 S serine             10.0         21           3
 T threonine           5.2         11           1
 V valine              3.3          7           1
 W tryptophan          1.9          4           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290692          0.993   PREDICTED: hypothetical protein XP_002348066 
LOC100287031          0.993   PREDICTED: hypothetical protein XP_002343746 
CASKIN1               0.030   CASK interacting protein 1 
SRRM1                 0.030   serine/arginine repetitive matrix 1 
DOT1L                 0.027   DOT1-like, histone H3 methyltransferase 
VASP                  0.025   vasodilator-stimulated phosphoprotein 
NKX1-1                0.025   PREDICTED: NK1 homeobox 1 
LOC100289242          0.025   PREDICTED: hypothetical protein XP_002342243 
LOC100130174          0.025   PREDICTED: hypothetical protein 
LOC100130174          0.025   PREDICTED: hypothetical protein 
LOC100130174          0.022   PREDICTED: hypothetical protein 
AJAP1                 0.020   adherens junction associated protein 1 
AJAP1                 0.020   adherens junction associated protein 1 
KIAA1522              0.020   hypothetical protein LOC57648 
LOC100292745          0.020   PREDICTED: hypothetical protein 
LOC100290074          0.020   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.020   PREDICTED: hypothetical protein XP_002342693 
WIPF1                 0.020   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.020   WAS/WASL interacting protein family, member 1 
WAS                   0.017   Wiskott-Aldrich syndrome protein 
LOC100133756          0.017   PREDICTED: hypothetical protein, partial 
SAMD11                0.017   sterile alpha motif domain containing 11 
LOC728275             0.017   PREDICTED: hypothetical protein 
LOC100292845          0.017   PREDICTED: hypothetical protein 
LOC100292934          0.017   PREDICTED: hypothetical protein 
LOC728275             0.017   PREDICTED: hypothetical protein 
KRTAP4-9              0.017   PREDICTED: keratin associated protein 4-9 
LOC100289230          0.017   PREDICTED: hypothetical protein XP_002342600 
ATXN2                 0.017   ataxin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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