Guide to the Human Genome
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Name: AJAP1 Sequence: fasta or formatted (411aa) NCBI GI: 109715839
Description:

adherens junction associated protein 1

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt mRNA [411aa] adherens junction associated protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         36           3
 C cysteine            1.7          7           2
 D aspartate           2.4         10           1
 E glutamate           5.1         21           2
 F phenylalanine       2.9         12           1
 G glycine             6.6         27           2
 H histidine           2.2          9           1
 I isoleucine          4.4         18           2
 K lysine              2.4         10           1
 L leucine             8.0         33           2
 M methionine          1.7          7           1
 N asparagine          2.7         11           2
 P proline             9.5         39           2
 Q glutamine           4.9         20           2
 R arginine            7.8         32           3
 S serine             11.4         47           8
 T threonine           9.5         39           7
 V valine              5.1         21           1
 W tryptophan          1.9          8           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   adherens junction associated protein 1 
AJAP1                 1.000   adherens junction associated protein 1 
ZNF207                0.029   zinc finger protein 207 isoform a 
ZNF207                0.026   zinc finger protein 207 isoform c 
C12orf53              0.026   hypothetical protein LOC196500 
TAF4                  0.024   TBP-associated factor 4 
WNK1                  0.022   WNK lysine deficient protein kinase 1 
SRRM2                 0.021   splicing coactivator subunit SRm300 
LOC100128127          0.020   PREDICTED: hypothetical protein 
LOC100288568          0.020   PREDICTED: hypothetical protein XP_002343338 
MUC12                 0.019   PREDICTED: mucin 12 
MUC17                 0.019   mucin 17 
WNK4                  0.017   WNK lysine deficient protein kinase 4 
LOC100133756          0.017   PREDICTED: hypothetical protein, partial 
LOC100128127          0.017   PREDICTED: hypothetical protein 
LOC100128127          0.017   PREDICTED: hypothetical protein 
POM121C               0.017   POM121 membrane glycoprotein (rat)-like 
CIC                   0.017   capicua homolog 
LOC100293409          0.017   PREDICTED: similar to Mucin-19 
LOC100291118          0.017   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.017   PREDICTED: hypothetical protein XP_002343203 
POM121                0.017   nuclear pore membrane protein 121 
LOC100131880          0.017   PREDICTED: hypothetical protein 
LOC100131880          0.017   PREDICTED: hypothetical protein 
MUC5B                 0.017   mucin 5, subtype B, tracheobronchial 
NACA                  0.016   nascent polypeptide-associated complex alpha subuni...
LOC100288540          0.016   PREDICTED: hypothetical protein XP_002342775 
MUC12                 0.016   PREDICTED: mucin 12, cell surface associated 
MAMSTR                0.016   MEF2 activating motif and SAP domain containing tra...
MAMSTR                0.016   MEF2 activating motif and SAP domain containing tran...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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