Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239757400
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
(338 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo sap... 689 0.0
gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo sap... 689 0.0
gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo sap... 689 0.0
gi|119395716 forkhead box C1 [Homo sapiens] 46 5e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 43 4e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 42 6e-04
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 42 0.001
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 41 0.002
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 41 0.002
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 41 0.002
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 41 0.002
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|163965366 nascent polypeptide-associated complex alpha subuni... 40 0.003
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 40 0.003
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 40 0.004
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 39 0.007
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 39 0.009
gi|55750053 atrophin-1 [Homo sapiens] 39 0.009
gi|55750041 atrophin-1 [Homo sapiens] 39 0.009
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 39 0.009
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 39 0.009
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 38 0.015
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 38 0.015
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 38 0.015
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 38 0.015
gi|113414915 PREDICTED: hypothetical protein [Homo sapiens] 38 0.015
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 38 0.015
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 38 0.015
gi|239741942 PREDICTED: hypothetical protein [Homo sapiens] 38 0.015
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 37 0.019
>gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 689 bits (1779), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT 60
MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT
Sbjct: 1 MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT 60
Query: 61 PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG
Sbjct: 61 PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
Query: 121 YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ 180
YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ
Sbjct: 121 YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ 180
Query: 181 TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT 240
TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT
Sbjct: 181 TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT 240
Query: 241 LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG 300
LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG
Sbjct: 241 LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG 300
Query: 301 SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI 338
SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI
Sbjct: 301 SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI 338
>gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 689 bits (1779), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT 60
MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT
Sbjct: 1 MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT 60
Query: 61 PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG
Sbjct: 61 PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
Query: 121 YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ 180
YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ
Sbjct: 121 YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ 180
Query: 181 TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT 240
TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT
Sbjct: 181 TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT 240
Query: 241 LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG 300
LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG
Sbjct: 241 LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG 300
Query: 301 SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI 338
SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI
Sbjct: 301 SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI 338
>gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 689 bits (1779), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT 60
MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT
Sbjct: 1 MLEWFRTADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRT 60
Query: 61 PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG
Sbjct: 61 PGGSGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
Query: 121 YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ 180
YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ
Sbjct: 121 YLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQ 180
Query: 181 TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT 240
TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT
Sbjct: 181 TGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKT 240
Query: 241 LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG 300
LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG
Sbjct: 241 LLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESEG 300
Query: 301 SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI 338
SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI
Sbjct: 301 SQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI 338
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 45.8 bits (107), Expect = 5e-05
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 18 PRTAPKAARDV---NGSAPQTAQA-SPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQA 73
P+ P +D+ NG+ P Q SP + GSGSA + + S + S +GS+P
Sbjct: 216 PQPPPVRIQDIKTENGTCPSPPQPLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSPPG 275
Query: 74 A-PQARRTVPPSLAGSFSLPPTPDSRFADWRTTGG------VRKAAGLGASVAGYLEHNL 126
+ P AR P SL G+ S PP P + G + G S A L L
Sbjct: 276 SLPSAR---PLSLDGADSAPPPPAPSAPPPHHSQGFSVDNIMTSLRGSPQSAAAELSSGL 332
Query: 127 RAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASA 167
A + G PP A +P ++S P + +SA +
Sbjct: 333 LASAAASSRAGIAPPLALGAYSPGQSSLYSSPCSQTSSAGS 373
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.1 bits (100), Expect = 4e-04
Identities = 64/251 (25%), Positives = 91/251 (36%), Gaps = 29/251 (11%)
Query: 16 SAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAP 75
S P P + SAP + Q P PA + P AP S+ TP P AP
Sbjct: 334 SPPLATPLPLAPPSPSAPPSLQTLPSPPA---TPPSQAPP-SMTTP---------PMQAP 380
Query: 76 QARRTVPP-----SLAG-SFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAH 129
+ +T+PP SL S PP+P + + TT + G A + +
Sbjct: 381 PSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATT-----SLGSPTLQATHSFLTMSPR 435
Query: 130 QLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQ 189
Q + + P + +PPL+ SLP +PP S P +V
Sbjct: 436 QTQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSP-AVSPLSSPLTIHPLQALSS 494
Query: 190 VLNLVPGEPERTLEQEEKEKLVSEAPP----PPGAMQSLRPEQTRGLLEPERTKTLLPRE 245
+ + P P +L E S APP PP ++ + E L P P
Sbjct: 495 LASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLT 554
Query: 246 SRAWEKPPHPA 256
+ E PP PA
Sbjct: 555 TPHLETPPCPA 565
Score = 32.7 bits (73), Expect = 0.47
Identities = 58/238 (24%), Positives = 76/238 (31%), Gaps = 44/238 (18%)
Query: 18 PRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQA 77
P AP P + ASP + PR+ PL+ AAP
Sbjct: 723 PPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLL----------------AAPPL 766
Query: 78 RRTVPPSLAGSFSLPP--TPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQ 135
+ VPPS S + P P + T ++ AS G + A L M
Sbjct: 767 Q--VPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSA-SLPMSP 823
Query: 136 LGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQVLNLVP 195
L T PP PL +P +PPAS + Q+ RR S G L L P
Sbjct: 824 LATPPPQAPPVLAAPLL---QVPPSPPASPTL--QAPRRPPTPGPDTSVSGPRLTLALAP 878
Query: 196 GEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTKTLLPRESRAWEKPP 253
G PPPP + L + T P E R ++ P
Sbjct: 879 G------------------PPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGP 918
Score = 32.0 bits (71), Expect = 0.81
Identities = 42/155 (27%), Positives = 56/155 (36%), Gaps = 19/155 (12%)
Query: 21 APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQ-NGSAPQAAPQARR 79
+P A+ V+ SA +QA P A P P +P + P AAP +
Sbjct: 678 SPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQ- 736
Query: 80 TVPPSLAGSFSLPP--TPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLG 137
VPPS S + P TP R ++ AS L M L
Sbjct: 737 -VPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPAS-------------LPMSPLA 782
Query: 138 TTPP-CNHAAGTPPLRLIHSLPHAPPASASAQPQS 171
PP A TPPL+ + S P + P A P +
Sbjct: 783 KPPPQAPPALATPPLQALPSPPASFPGQAPFSPSA 817
Score = 28.9 bits (63), Expect = 6.8
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 14 TDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQA 73
T APR P D + S P+ A P P +P ++ P +G + SA +
Sbjct: 851 TLQAPRRPPTPGPDTSVSGPRLTLALAPGPP---PPPSRSPSSTLSGPDLAGHSSSA-TS 906
Query: 74 APQARRTVPPSLAGSFSLPPTPDSRFA 100
P+ R G + P PD+ A
Sbjct: 907 TPEELRGYDSGPEGGAAASPPPDAELA 933
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 42.4 bits (98), Expect = 6e-04
Identities = 82/308 (26%), Positives = 105/308 (34%), Gaps = 83/308 (26%)
Query: 17 APRTAPKAARDVNGSAPQTAQASPDSPA-----GSGSAPRIAPLISIRTPG-GSGQNG-- 68
APR AP AA +AP A P PA APR A + P G Q G
Sbjct: 114 APRGAPAAAA---AAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPR 170
Query: 69 ---SAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHN 125
+AP AAP PP++A PP G R+A +
Sbjct: 171 AQRAAPLAAPPPAPAAPPAVA-----PP------------AGPRRAPPPAVAA------- 206
Query: 126 LRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPP------ASASAQPQSVRRQLCRA 179
R L PP P P PP A +A+P S+ R++ R
Sbjct: 207 -REPPLPPPPQPPAPPQQQQPPPPQ-------PQPPPEGGAVRAGGAARPVSL-REVVRY 257
Query: 180 QTGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPERTK 239
GSG G + L G + LE+E RG LE R
Sbjct: 258 LGGSGGAGGR---LTRGRVQGLLEEE---------------------AAARGRLERTRLG 293
Query: 240 TL-LPRESRAWEKPP----HPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEE 294
L LPR R PP P+ +K V + D+ + +E +S E S V E
Sbjct: 294 ALALPRGDRPGRAPPAASARPSRSKRGGEERVLEKEEEEDDDEDEDEEDDVS-EGSEVPE 352
Query: 295 DDESEGSQ 302
D G+Q
Sbjct: 353 SDRPAGAQ 360
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 41.6 bits (96), Expect = 0.001
Identities = 58/216 (26%), Positives = 80/216 (37%), Gaps = 48/216 (22%)
Query: 105 TGGVRKAAGLGASVAGYLE------HNLRAHQLEMDQLGTTPP---CNHAAGTPPL---- 151
TGG R ++GLG S +LE +RA Q + G PP + AAG PP
Sbjct: 3 TGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQ---NPPGPAPPGGGSSDAAGKPPAGALG 59
Query: 152 --------RLIHSLP-HAPPASASAQPQSVRRQLCRAQTGSGWGGPQVLNLVPGEPERTL 202
L ++LP AP A A P V + G + PG P R+
Sbjct: 60 TPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV---------GSAMLTRAAPG-PRRS- 108
Query: 203 EQEEKEKLVSEAPPP----------PGAMQSLRPEQTRGLLEPERTKTLLPRESRAWEKP 252
E E S APPP P +S P +G + E+ K R S
Sbjct: 109 EDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNI 168
Query: 253 PHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQE 288
P C ++E E G + +D +Q+ + E
Sbjct: 169 PAAECLDEYEDDEAG--QKERKREDAITQQNTIQNE 202
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 40.8 bits (94), Expect = 0.002
Identities = 71/303 (23%), Positives = 98/303 (32%), Gaps = 46/303 (15%)
Query: 33 PQTAQASPDSPAGSGSAPRIAP------LISIRTPGGSGQN-------GSAPQAAPQARR 79
P Q P P+ G A +P + + PGG+ + G PQ
Sbjct: 482 PTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPG 541
Query: 80 TVPPSLAGS-------FSLPPTPDSRFADWRTTGGVRK--AAGLGASVAGYLEHNLRA-- 128
+ PP AG F PP +T AAG GA+ AG R
Sbjct: 542 SGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA 601
Query: 129 ----HQLEMDQLGTTPPCNHAAGTP--------PLRLIHSLPHAPPASASAQPQSVRRQL 176
H LE + G + +A P L +H P SA P
Sbjct: 602 PHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPH 661
Query: 177 CRAQTGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPE 236
P L L+P +P+ + PPPP + P RGLL P
Sbjct: 662 HHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHH-RGLLSPG 720
Query: 237 RTKTLLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDD 296
T P E + ++ + E EV H E + +E G + EED+
Sbjct: 721 GTSCCYPSEDSSEDE------DDEEEEQEVDVEGHKPPEGE--EEEEGRDPD-DDEEEDE 771
Query: 297 ESE 299
E+E
Sbjct: 772 ETE 774
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 40.8 bits (94), Expect = 0.002
Identities = 71/303 (23%), Positives = 98/303 (32%), Gaps = 46/303 (15%)
Query: 33 PQTAQASPDSPAGSGSAPRIAP------LISIRTPGGSGQN-------GSAPQAAPQARR 79
P Q P P+ G A +P + + PGG+ + G PQ
Sbjct: 482 PTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPG 541
Query: 80 TVPPSLAGS-------FSLPPTPDSRFADWRTTGGVRK--AAGLGASVAGYLEHNLRA-- 128
+ PP AG F PP +T AAG GA+ AG R
Sbjct: 542 SGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA 601
Query: 129 ----HQLEMDQLGTTPPCNHAAGTP--------PLRLIHSLPHAPPASASAQPQSVRRQL 176
H LE + G + +A P L +H P SA P
Sbjct: 602 PHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPH 661
Query: 177 CRAQTGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPE 236
P L L+P +P+ + PPPP + P RGLL P
Sbjct: 662 HHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHH-RGLLSPG 720
Query: 237 RTKTLLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDD 296
T P E + ++ + E EV H E + +E G + EED+
Sbjct: 721 GTSCCYPSEDSSEDE------DDEEEEQEVDVEGHKPPEGE--EEEEGRDPD-DDEEEDE 771
Query: 297 ESE 299
E+E
Sbjct: 772 ETE 774
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1 [Homo
sapiens]
Length = 1008
Score = 40.8 bits (94), Expect = 0.002
Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 26/183 (14%)
Query: 21 APKAARDVNGSAPQTAQASPDSP-------AGSGSAPRIAPLISIRTPGGSGQNGSAPQA 73
+P + +D G + + QA+P +P AG + A S+ T G +AP A
Sbjct: 827 SPMSPQDGAGGSAFSFQAAPRAPSPPSRRDAGLQVSLGAAETRSVAT-GPMTPQAAAPPA 885
Query: 74 APQARRTVPPSLAGSFSLPPTP---------DSRFADWRTTGGVRKAAGLGASVAGYLEH 124
P+ R +LA + + PP P D + W G + LG ++ +LE
Sbjct: 886 FPEVRVRPGSALAAAVA-PPEPAEPVRDVSWDEKGMTWEVYGAAMEVEVLGMAIQKHLER 944
Query: 125 NLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLP-----HAPPASASAQPQSVRRQLCRA 179
+ H Q PP AG + + P PP A QSVRR C +
Sbjct: 945 QIEEHG---RQGAPAPPPAARAGPGRSGSVRTAPPDGAAKRPPGLFRALLQSVRRPRCCS 1001
Query: 180 QTG 182
+ G
Sbjct: 1002 RAG 1004
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 40.8 bits (94), Expect = 0.002
Identities = 63/252 (25%), Positives = 83/252 (32%), Gaps = 42/252 (16%)
Query: 8 ADSSRQTDSAPRTAPKAARDVNGSAPQTAQAS-PDSPA-----------GSGSAPRIAPL 55
+ S R + PR P R + G PQT + S P +PA P + L
Sbjct: 356 SSSLRPSQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPAPVPQPFSLPEPSQPILPSVLSL 415
Query: 56 ISIRTPGGSGQNGSAPQAAPQARRTVPPSL-AGSFSLPPTPDSRFADWRTTGGVRKAAGL 114
+ + TPG S +GS A PP+L +GS P P T+G + G
Sbjct: 416 LGLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGA 475
Query: 115 GASVAGYLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASA------- 167
A A + + L+ G A PPL + P P A
Sbjct: 476 PAPPAASKAPVVPSPVLQSPSEGLGMGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFP 535
Query: 168 -------------QPQS---VRRQLCRAQTGSGWGGPQVLNLV-----PGEPERTLEQEE 206
QP + L TG G G P L+ PG P E E
Sbjct: 536 GMLGALPLPLSLGQPPPSPLLNHSLFGVLTGGG-GQPPPEPLLPPPGGPGPPLAPGEPEG 594
Query: 207 KEKLVSEAPPPP 218
LV+ PPP
Sbjct: 595 PSLLVASLLPPP 606
Score = 34.7 bits (78), Expect = 0.12
Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 17/155 (10%)
Query: 16 SAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRI-APLISIRTPGGSGQNGSAPQAA 74
SAP+ P + + A + +P+ SG P++ +PL+ G S+P A
Sbjct: 699 SAPQPGPPTSSVTTATTDPGASSLGKAPSNSGRPPQLLSPLLGASLLGDLSSLTSSPGAL 758
Query: 75 PQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMD 134
P + P L+G L P GG +S L +L+ E
Sbjct: 759 PSLLQPPGPLLSGQLGLQLLPG---------GGAPPPLSEASSPLACLLQSLQIPP-EQP 808
Query: 135 QLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQP 169
+ PP + A+ P P PP SA A P
Sbjct: 809 EAPCLPPESPASALEP------EPARPPLSALAPP 837
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 40.4 bits (93), Expect = 0.002
Identities = 71/303 (23%), Positives = 98/303 (32%), Gaps = 46/303 (15%)
Query: 33 PQTAQASPDSPAGSGSAPRIAP------LISIRTPGGSGQN-------GSAPQAAPQARR 79
P Q P P+ G A +P + + PGG+ + G PQ
Sbjct: 482 PTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPG 541
Query: 80 TVPPSLAGS-------FSLPPTPDSRFADWRTTGGVRK--AAGLGASVAGYLEHNLRA-- 128
+ PP AG F PP +T AAG GA+ AG R
Sbjct: 542 SGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA 601
Query: 129 ----HQLEMDQLGTTPPCNHAAGTP--------PLRLIHSLPHAPPASASAQPQSVRRQL 176
H LE + G + +A P L +H P SA P
Sbjct: 602 PHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPH 661
Query: 177 CRAQTGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQTRGLLEPE 236
P L L+P +P+ + PPPP + P RGLL P
Sbjct: 662 HHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHH-RGLLSPG 720
Query: 237 RTKTLLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDD 296
T P E + ++ + E EV H E + +E G + EED+
Sbjct: 721 GTSCSYPSEDSSEDE------DDEEEEQEVDVEGHKPPEGE--EEEEGRDPD-DDEEEDE 771
Query: 297 ESE 299
E+E
Sbjct: 772 ETE 774
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.0 bits (92), Expect = 0.003
Identities = 52/191 (27%), Positives = 64/191 (33%), Gaps = 43/191 (22%)
Query: 14 TDSAPRTAPKA--ARDVNGSAPQTAQASPDSPAG--SGSAPRIAPLISIRTPGG--SGQN 67
T +A +PK A AP T A+P SP G + +P+ AP TP G
Sbjct: 1197 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPA 1256
Query: 68 GSAPQAAPQARRTVPPSLAGSFSLPP----------TPDSRFADWRTTGGVRKAAGLGAS 117
P+ AP PPSL G + PP TP S GG + GA
Sbjct: 1257 TPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPS------PKGGPATSPPKGAP 1310
Query: 118 VAGYLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLC 177
T P + GTPP + + P P S P
Sbjct: 1311 T---------------PPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTP------TL 1349
Query: 178 RAQTGSGWGGP 188
A T S GGP
Sbjct: 1350 PATTPSSKGGP 1360
Score = 39.3 bits (90), Expect = 0.005
Identities = 56/227 (24%), Positives = 74/227 (32%), Gaps = 35/227 (15%)
Query: 14 TDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRI--APLISIRTPGG--SGQNGS 69
T +P+ +P AA + AP T A+ SP G + P + AP TP G
Sbjct: 1039 TPPSPKGSP-AATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATP 1097
Query: 70 APQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRT----TGGVRKAAGLGASVAGYLEHN 125
+P+ AP PPS G + PP + T GG+ GA
Sbjct: 1098 SPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTT------ 1151
Query: 126 LRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGW 185
T P TPP P P + +A P S + L T S
Sbjct: 1152 ---------PAATPPSPKGGLATPP-------PKGAPTTPAATPPSPKGGLA---TPSPK 1192
Query: 186 GGPQVLNLVPGEPERTL-EQEEKEKLVSEAPPPPGAMQSLRPEQTRG 231
G P P P+ L K + A PP L +G
Sbjct: 1193 GAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKG 1239
Score = 35.4 bits (80), Expect = 0.073
Identities = 56/219 (25%), Positives = 73/219 (33%), Gaps = 35/219 (15%)
Query: 7 TADSSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGS--APRIAPLISIRTPGG- 63
T+ S ++ + P A AP A+P SP G + +P+ AP TP
Sbjct: 914 TSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSP 973
Query: 64 -SGQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYL 122
G +P+ AP PPS G P TP + A T V + G+ A
Sbjct: 974 KGGPATPSPKGAPTPPAATPPSPKGG---PATPSPKGAP--TPPAVTPPSPKGSPAA--- 1025
Query: 123 EHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQT- 181
P A TPP + P +P S +A P A T
Sbjct: 1026 -----------------TPFPKGASTPPA----ATPPSPKGSPAATPLPKGAPTTPAATL 1064
Query: 182 GSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGA 220
S GGP +L G P K P P GA
Sbjct: 1065 PSPKGGPATPSL-KGAPTPPAATPPSPKGGPATPSPKGA 1102
Score = 32.7 bits (73), Expect = 0.47
Identities = 54/215 (25%), Positives = 69/215 (32%), Gaps = 43/215 (20%)
Query: 14 TDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPR-----IAPLISIRTPGGSGQNG 68
T +P+ P A AP A+P SP G + P P ++ +P GS
Sbjct: 969 TPPSPKGGP--ATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAAT 1026
Query: 69 SAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRA 128
P+ A PPS GS + P P AA L + G +L+
Sbjct: 1027 PFPKGASTPPAATPPSPKGSPAATPLPKG--------APTTPAATLPSPKGGPATPSLKG 1078
Query: 129 HQLEMDQLGTTPPCNHAAGTPPLRL---IHSLPHAPPASASAQPQSVRRQLCRAQTGSGW 185
TPP A TPP P P +A P S + L T
Sbjct: 1079 --------APTPP----AATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLA---TPPHK 1123
Query: 186 GGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGA 220
G P P P+ L PPP GA
Sbjct: 1124 GAPTTPAATPPSPKGGL----------ATPPPKGA 1148
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 40.0 bits (92), Expect = 0.003
Identities = 73/303 (24%), Positives = 109/303 (35%), Gaps = 50/303 (16%)
Query: 25 ARDVNGSAPQT----------AQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAA 74
A+DV G P + +ASP++ + PR+ PG + S P
Sbjct: 249 AKDVPGGGPSSSAPAGAEADGPKASPEARPQIPTKPRV--------PGKLQELASPPAGR 300
Query: 75 PQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMD 134
P T P A + P P R + + AG + V G R H+L +
Sbjct: 301 P----TPAPRKASESTTPAPPTPRPRSSLQQENLVEQAGSSSLVNG------RLHELPVP 350
Query: 135 QLGTTPPCNHAAGTPPLR-------LIHSLPH-----APPASASAQPQSVRRQLCRAQTG 182
+ TP + GTP R L+ + P PP+S+ P RQ+ T
Sbjct: 351 KPRGTP--KPSEGTPAPRKDPPWITLVQAEPKKKPAPLPPSSSPGPPSQDSRQVENGGT- 407
Query: 183 SGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSL---RPEQTRGLLEPERTK 239
P + +P E+EE++K EAP P S PE T L P
Sbjct: 408 EEVAQPSPTASLESKPYNPFEEEEEDK-EEEAPAAPSLATSPALGHPESTPKSLHP--WY 464
Query: 240 TLLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWSSVEEDDESE 299
+ P S +K P P + + AS E ++ LS E S E ++
Sbjct: 465 GITPTSSPKTKKRPAPRAPSA-SPLALHASRLSHSEPPSATPSPALSVESLSSESASQTA 523
Query: 300 GSQ 302
G++
Sbjct: 524 GAE 526
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 39.7 bits (91), Expect = 0.004
Identities = 63/234 (26%), Positives = 85/234 (36%), Gaps = 66/234 (28%)
Query: 12 RQTDSAPRTAPKAARDVNGSAPQTAQASPDSPA-----GSGSAPRIAPLISIRTPGGSGQ 66
R TDS +P NGS P + P SPA SG P + L + TPG +G
Sbjct: 290 RSTDSEVSQSPAK----NGSKPVHSNQHPQSPAVPPTYPSGPPPAASALST--TPGNNGV 343
Query: 67 NGSA-------PQA-----------APQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGV 108
A P+A AP A+ PP+ +G + P P S + +GG
Sbjct: 344 PAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPS----VQPSGGG 399
Query: 109 RKAAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSL----------- 157
+G G S + N A Q G T + A +P + S
Sbjct: 400 GGGSGGGGSSS---SSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALG 456
Query: 158 ----PHAPPASASAQPQSVRRQLCRAQTGSGW---------GGPQVLNLVPGEP 198
PH PP S S +P + A TG+G GGP +L +P P
Sbjct: 457 PPSGPHNPPPSTSKEPSAA------APTGAGGVAPGSGNNSGGPSLLVPLPVNP 504
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 38.9 bits (89), Expect = 0.007
Identities = 52/205 (25%), Positives = 69/205 (33%), Gaps = 42/205 (20%)
Query: 48 SAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT-VPPSLAGSFSLPPTPDSRFADWRTTG 106
+AP++ P + + P AP P R P G +P P S+F TT
Sbjct: 187 AAPQLGPGQTTQLPLSESSVPGAPHGPPPGLRPDAPGGGGGGGGVPGKPPSQFVYVFTTH 246
Query: 107 GVRKAA-----GLGASVAGYLEHNLRAHQLEMDQLGTTPPCNH-------AAGTPPLRLI 154
AA G S+ Y + N+ + ++DQ PP +AGTP +
Sbjct: 247 LANTAAEAVLQGRADSILAYHQQNVP--RAKLDQAPKVPPTPEPLPLSTPSAGTPQSQPP 304
Query: 155 HSLPHAPPASASAQP-------------QSVRRQLCRAQTGSGWGGPQVLNLVPGEPERT 201
P PPA SA P + A TG G GG P P T
Sbjct: 305 PLPPPPPPAPGSAPPALPPEGPPEDSSQDLAPNSVGAASTGGGTGGTH-----PNTPTAT 359
Query: 202 LEQEEKEKLVSEAPPPPGAMQSLRP 226
+ P PPG S P
Sbjct: 360 ---------TANNPLPPGGDPSSAP 375
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 38.5 bits (88), Expect = 0.009
Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 17 APRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAP- 75
APR P AAR +A Q + SP P G G +PL P G+ +AP P
Sbjct: 59 APRERPAAARLSALAAAQPRRRSP-GPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPL 117
Query: 76 QARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGA 116
AR + PP S +P S A W G A L A
Sbjct: 118 PARPSSPPPSPPSPPVPTAQSSLPAPWPPQGPRSPAPSLRA 158
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.5 bits (88), Expect = 0.009
Identities = 59/235 (25%), Positives = 81/235 (34%), Gaps = 50/235 (21%)
Query: 16 SAPRTAPK---AARDVNGS------APQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQ 66
S P PK AA V G P T S S SG+ P P TP G G
Sbjct: 229 SGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPT----TPVGGGN 284
Query: 67 NGSAPQAA--PQARRTVPPSLA--------------GSFSLPPTPDSRFADWRTTGGVRK 110
SAP A P +PP A G+ LP S A + GG+
Sbjct: 285 LPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPP 344
Query: 111 AAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQ 170
G ++A H+L PP + +A PP+R +S + A+AS+
Sbjct: 345 GPEKGPTLAPS-PHSL-------------PPASSSAPAPPMRFPYSSSSSSSAAASSSSS 390
Query: 171 SVRRQLCRAQTGS-------GWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPP 218
S + P L++ P+ T + + S+ PPPP
Sbjct: 391 SSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPP 445
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.5 bits (88), Expect = 0.009
Identities = 59/235 (25%), Positives = 81/235 (34%), Gaps = 50/235 (21%)
Query: 16 SAPRTAPK---AARDVNGS------APQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQ 66
S P PK AA V G P T S S SG+ P P TP G G
Sbjct: 229 SGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPT----TPVGGGN 284
Query: 67 NGSAPQAA--PQARRTVPPSLA--------------GSFSLPPTPDSRFADWRTTGGVRK 110
SAP A P +PP A G+ LP S A + GG+
Sbjct: 285 LPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPP 344
Query: 111 AAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQ 170
G ++A H+L PP + +A PP+R +S + A+AS+
Sbjct: 345 GPEKGPTLAPS-PHSL-------------PPASSSAPAPPMRFPYSSSSSSSAAASSSSS 390
Query: 171 SVRRQLCRAQTGS-------GWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPP 218
S + P L++ P+ T + + S+ PPPP
Sbjct: 391 SSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPP 445
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 38.5 bits (88), Expect = 0.009
Identities = 69/273 (25%), Positives = 88/273 (32%), Gaps = 66/273 (24%)
Query: 33 PQTAQASPDSPA-GSGSAPRIAPLISIRTPG-GSGQNGSAPQAAPQARRTVPPSLAGSFS 90
P P P G G P P PG G G S PQ PPS+
Sbjct: 327 PPPGMLMPPMPGPGPGPGPGPGP-----GPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIP 381
Query: 91 LPPTPDSRFADWRT---TGGVRKAAGLGASVAGYLEHNL------------RAH---QLE 132
PP S + R T V A +G + L NL R H E
Sbjct: 382 RPPITQSSLINSRDQPGTSAVPNLASVGTRLPPPLPQNLLYTVSERQPMYSREHGAAASE 441
Query: 133 MDQLGTTPPCNHAAGTPPLRLIHSL------------------------PHAPPASASAQ 168
QLGT PP A PP L+ S P AP ++S +
Sbjct: 442 RLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGR 501
Query: 169 PQSVRRQLCRAQTGSGWGGPQVLNLVPGEPERTLEQEEKEKLVSEAPPPPGAMQSLRPEQ 228
Q R+ R QT P ++ L G+ + + ++ PP P S+
Sbjct: 502 SQ-YRQFFSRTQTQR----PNLIGLTSGDMD--VNPRAANIVIQTEPPVP---VSINSNI 551
Query: 229 TRGLLEPERTKTLLPRESRAWEKPPHPACTKDW 261
TR +LEP+ K RA P K W
Sbjct: 552 TRVVLEPDSRK-------RAMSGLEGPLTKKPW 577
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 38.5 bits (88), Expect = 0.009
Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 31/227 (13%)
Query: 15 DSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTP--GGSGQNGSAPQ 72
+ P +P A + P + SP + S +A ++P + P GG G+ G A
Sbjct: 736 EQGPTVSPAPADE-----PSSPLLSPGCTSSSSAAKLLSPRRTAPRPRLGGRGRPGRAGA 790
Query: 73 AAPQARRTVPPSLAGSFSLPPTPDSRFADW--RTTGGVRKAAGLGASVAGYLEHNLRAHQ 130
+A + PP LPP P + D R G+ G + + + R Q
Sbjct: 791 LKAEAGPSAPPRALEGLRLPPMPWNVPPDLSPRVVDGIEDGCG-----SDQPKFSFRVGQ 845
Query: 131 LEMDQLGTTPPCNHAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQV 190
+ P C+ + P + ++PH P + + RQ + QV
Sbjct: 846 -------SGPECSSSPSPGPESGLLTVPHGPSEARNTDTLDKLRQAVTELS------EQV 892
Query: 191 LNLVPGEPERTLEQEEKEKLV--SEAPPPPGAMQSLRPEQTRGLLEP 235
L + G ++L Q + L E P P + + P T GLL+P
Sbjct: 893 LQMREG--LQSLRQAVQLVLAPHREGPCPRASGEGPCPASTSGLLQP 937
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 37.7 bits (86), Expect = 0.015
Identities = 50/193 (25%), Positives = 70/193 (36%), Gaps = 18/193 (9%)
Query: 29 NGSAP-QTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSA--PQAAPQARRT-VP-P 83
+GS P +T P A S P +P R+P SG + + P RT VP P
Sbjct: 1564 HGSLPVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKVISRTGVPQP 1623
Query: 84 SLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCN 143
+ A S S P TP + G + + LE L E + G + P
Sbjct: 1624 TQAQSASSPSTPLT------VAGTAAEQVPVSPLATRSLEIVLST---EKGEAGHSQPMG 1674
Query: 144 HAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQVLNLVPGEPERTLE 203
A P H LP APP A + R +T + + + P +LE
Sbjct: 1675 SPASPQP----HPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDGLAATPFMSLE 1730
Query: 204 QEEKEKLVSEAPP 216
+L+S PP
Sbjct: 1731 STRPSQLLSGLPP 1743
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 37.7 bits (86), Expect = 0.015
Identities = 50/193 (25%), Positives = 70/193 (36%), Gaps = 18/193 (9%)
Query: 29 NGSAP-QTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSA--PQAAPQARRT-VP-P 83
+GS P +T P A S P +P R+P SG + + P RT VP P
Sbjct: 1636 HGSLPVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKVISRTGVPQP 1695
Query: 84 SLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCN 143
+ A S S P TP + G + + LE L E + G + P
Sbjct: 1696 TQAQSASSPSTPLT------VAGTAAEQVPVSPLATRSLEIVLST---EKGEAGHSQPMG 1746
Query: 144 HAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQVLNLVPGEPERTLE 203
A P H LP APP A + R +T + + + P +LE
Sbjct: 1747 SPASPQP----HPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDGLAATPFMSLE 1802
Query: 204 QEEKEKLVSEAPP 216
+L+S PP
Sbjct: 1803 STRPSQLLSGLPP 1815
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 37.7 bits (86), Expect = 0.015
Identities = 50/193 (25%), Positives = 70/193 (36%), Gaps = 18/193 (9%)
Query: 29 NGSAP-QTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSA--PQAAPQARRT-VP-P 83
+GS P +T P A S P +P R+P SG + + P RT VP P
Sbjct: 1564 HGSLPVRTTPLQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKVISRTGVPQP 1623
Query: 84 SLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCN 143
+ A S S P TP + G + + LE L E + G + P
Sbjct: 1624 TQAQSASSPSTPLT------VAGTAAEQVPVSPLATRSLEIVLST---EKGEAGHSQPMG 1674
Query: 144 HAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQVLNLVPGEPERTLE 203
A P H LP APP A + R +T + + + P +LE
Sbjct: 1675 SPASPQP----HPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDGLAATPFMSLE 1730
Query: 204 QEEKEKLVSEAPP 216
+L+S PP
Sbjct: 1731 STRPSQLLSGLPP 1743
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 37.7 bits (86), Expect = 0.015
Identities = 50/193 (25%), Positives = 70/193 (36%), Gaps = 18/193 (9%)
Query: 29 NGSAP-QTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSA--PQAAPQARRT-VP-P 83
+GS P +T P A S P +P R+P SG + + P RT VP P
Sbjct: 1636 HGSLPVRTTPLQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKVISRTGVPQP 1695
Query: 84 SLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCN 143
+ A S S P TP + G + + LE L E + G + P
Sbjct: 1696 TQAQSASSPSTPLT------VAGTAAEQVPVSPLATRSLEIVLST---EKGEAGHSQPMG 1746
Query: 144 HAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQVLNLVPGEPERTLE 203
A P H LP APP A + R +T + + + P +LE
Sbjct: 1747 SPASPQP----HPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDGLAATPFMSLE 1802
Query: 204 QEEKEKLVSEAPP 216
+L+S PP
Sbjct: 1803 STRPSQLLSGLPP 1815
>gi|113414915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 37.7 bits (86), Expect = 0.015
Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 28/151 (18%)
Query: 21 APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT 80
AP R + S P A A+ PAGS P+ S R GGS RR
Sbjct: 27 APGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGS-------------RRP 73
Query: 81 VP--PSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGT 138
+P P S +PP P R W + G A G V L +L +
Sbjct: 74 LPAGPHPGLSAEVPPVPSRR---WLSGRGKAGAVLAGTGVYALLPE-------AGSRLCS 123
Query: 139 TPPCNHAAGTPPLRLIHSLP-HAPPASASAQ 168
P A TP R + SLP HAP Q
Sbjct: 124 LP--GFCAATPHPRRLSSLPLHAPAGQGELQ 152
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 37.7 bits (86), Expect = 0.015
Identities = 50/193 (25%), Positives = 70/193 (36%), Gaps = 18/193 (9%)
Query: 29 NGSAP-QTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSA--PQAAPQARRT-VP-P 83
+GS P +T P A S P +P R+P SG + + P RT VP P
Sbjct: 1564 HGSLPVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKVISRTGVPQP 1623
Query: 84 SLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCN 143
+ A S S P TP + G + + LE L E + G + P
Sbjct: 1624 TQAQSASSPSTPLT------VAGTAAEQVPVSPLATRSLEIVLST---EKGEAGHSQPMG 1674
Query: 144 HAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQVLNLVPGEPERTLE 203
A P H LP APP A + R +T + + + P +LE
Sbjct: 1675 SPASPQP----HPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDGLAATPFMSLE 1730
Query: 204 QEEKEKLVSEAPP 216
+L+S PP
Sbjct: 1731 STRPSQLLSGLPP 1743
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 37.7 bits (86), Expect = 0.015
Identities = 50/193 (25%), Positives = 70/193 (36%), Gaps = 18/193 (9%)
Query: 29 NGSAP-QTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSA--PQAAPQARRT-VP-P 83
+GS P +T P A S P +P R+P SG + + P RT VP P
Sbjct: 1636 HGSLPVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKVISRTGVPQP 1695
Query: 84 SLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGTTPPCN 143
+ A S S P TP + G + + LE L E + G + P
Sbjct: 1696 TQAQSASSPSTPLT------VAGTAAEQVPVSPLATRSLEIVLST---EKGEAGHSQPMG 1746
Query: 144 HAAGTPPLRLIHSLPHAPPASASAQPQSVRRQLCRAQTGSGWGGPQVLNLVPGEPERTLE 203
A P H LP APP A + R +T + + + P +LE
Sbjct: 1747 SPASPQP----HPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDGLAATPFMSLE 1802
Query: 204 QEEKEKLVSEAPP 216
+L+S PP
Sbjct: 1803 STRPSQLLSGLPP 1815
>gi|239741942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 37.7 bits (86), Expect = 0.015
Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 28/151 (18%)
Query: 21 APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT 80
AP R + S P A A+ PAGS P+ S R GGS RR
Sbjct: 27 APGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGS-------------RRP 73
Query: 81 VP--PSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGT 138
+P P S +PP P R W + G A G V L +L +
Sbjct: 74 LPAGPHPGLSAEVPPVPSRR---WLSGRGKAGAVLAGTGVYALLPE-------AGSRLCS 123
Query: 139 TPPCNHAAGTPPLRLIHSLP-HAPPASASAQ 168
P A TP R + SLP HAP Q
Sbjct: 124 LP--GFCAATPHPRRLSSLPLHAPAGQGELQ 152
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 37.4 bits (85), Expect = 0.019
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 20 TAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARR 79
T+P + +P + SP SP+ S S+PR P TP + S+P +P + +
Sbjct: 1779 TSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPK 1838
Query: 80 TVPPSLAGSFSLPP-TPDS 97
P S + S S P TP S
Sbjct: 1839 YTPTSPSYSPSSPEYTPTS 1857
Score = 34.3 bits (77), Expect = 0.16
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 7 TADSSRQTDSAPR---TAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGG 63
T S + + ++P+ T+PK + +P T + SP SP S ++P P +P
Sbjct: 1854 TPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTS 1913
Query: 64 SGQNGSAPQAAPQARRTVPPSLAGSFSLPPTP 95
+ ++P+ +P + P S GS P +P
Sbjct: 1914 PTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSP 1945
Score = 32.3 bits (72), Expect = 0.62
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 10 SSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGS 69
S + ++P +P + R PQ+ +P SP+ S S+P +P TP + S
Sbjct: 1794 SPSYSPTSPSYSPSSPR----YTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPS 1849
Query: 70 APQAAPQARRTVPPS 84
+P+ P + + P S
Sbjct: 1850 SPEYTPTSPKYSPTS 1864
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/76 (25%), Positives = 34/76 (44%)
Query: 17 APRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQ 76
+P + R G PQ+ SP SP+ S ++P +P +P + ++P +P
Sbjct: 1594 SPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPT 1653
Query: 77 ARRTVPPSLAGSFSLP 92
+ P S + S + P
Sbjct: 1654 SPSYSPTSPSYSPTSP 1669
Score = 30.0 bits (66), Expect = 3.1
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 20 TAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARR 79
T+P + +P + +P SP S ++P +P +P + S+P+ PQ+
Sbjct: 1758 TSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPT 1817
Query: 80 TVPPSLAGSFSLP 92
P S + S S P
Sbjct: 1818 YTPSSPSYSPSSP 1830
Score = 30.0 bits (66), Expect = 3.1
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 10 SSRQTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGS 69
S + S+PR P++ P + SP SP+ S ++P+ P +P +
Sbjct: 1801 SPSYSPSSPRYTPQSPT----YTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT 1856
Query: 70 APQAAPQARRTVPPS 84
+P+ +P + + P S
Sbjct: 1857 SPKYSPTSPKYSPTS 1871
Score = 29.3 bits (64), Expect = 5.2
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 20 TAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARR 79
T+P + +P + SP SP+ S ++P +P TP + ++P +P +
Sbjct: 1716 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPN 1775
Query: 80 TVPPS 84
P S
Sbjct: 1776 YTPTS 1780
Score = 28.9 bits (63), Expect = 6.8
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 20 TAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARR 79
T+P + +P + +P SP+ S ++P +P TP + ++P +P +
Sbjct: 1737 TSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS 1796
Query: 80 TVPPSLAGSFSLPP-TPDS 97
P S + S S P TP S
Sbjct: 1797 YSPTSPSYSPSSPRYTPQS 1815
Score = 28.5 bits (62), Expect = 8.9
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 13 QTDSAPRTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQ 72
Q+ S T+P + +P + SP SP+ S ++P +P +P + ++P
Sbjct: 1611 QSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1670
Query: 73 AAPQARRTVPPSLAGSFSLP 92
+P + P S + S + P
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSP 1690
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,335,811
Number of Sequences: 37866
Number of extensions: 1030897
Number of successful extensions: 6469
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 487
Number of HSP's that attempted gapping in prelim test: 5706
Number of HSP's gapped (non-prelim): 1160
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.