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Search of human proteins with 239757258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757258 PREDICTED: hypothetical protein [Homo sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757258 PREDICTED: hypothetical protein [Homo sapiens] 473 e-134
gi|239751759 PREDICTED: hypothetical protein [Homo sapiens] 473 e-134
gi|239746259 PREDICTED: hypothetical protein [Homo sapiens] 473 e-134
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.017
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 36 0.022
gi|45439357 elongin A2 [Homo sapiens] 35 0.050
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 35 0.065
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 35 0.065
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 35 0.065
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 35 0.065
gi|7706501 WW domain binding protein 11 [Homo sapiens] 35 0.065
gi|239750117 PREDICTED: hypothetical protein [Homo sapiens] 34 0.11
gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo ... 34 0.11
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens] 33 0.14
gi|73808090 zinc finger protein 207 isoform b [Homo sapiens] 33 0.14
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 33 0.19
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 33 0.19
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 33 0.19
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap... 32 0.32
gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo sap... 32 0.32
gi|239741831 PREDICTED: hypothetical protein [Homo sapiens] 32 0.32
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 32 0.32
gi|116174780 SEC24 related gene family, member A [Homo sapiens] 32 0.32
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 32 0.32
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 32 0.32
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 32 0.42
gi|18105007 carbamoylphosphate synthetase 2/aspartate transcarba... 32 0.42
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 32 0.42
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 32 0.55
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 32 0.55
>gi|239757258 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 473 bits (1217), Expect = e-134
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP 60
MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP
Sbjct: 1 MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP 60
Query: 61 VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY 120
VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY
Sbjct: 61 VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY 120
Query: 121 CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG 180
CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG
Sbjct: 121 CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG 180
Query: 181 GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK 219
GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK
Sbjct: 181 GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK 219
>gi|239751759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 473 bits (1217), Expect = e-134
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP 60
MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP
Sbjct: 1 MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP 60
Query: 61 VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY 120
VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY
Sbjct: 61 VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY 120
Query: 121 CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG 180
CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG
Sbjct: 121 CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG 180
Query: 181 GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK 219
GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK
Sbjct: 181 GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK 219
>gi|239746259 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 473 bits (1217), Expect = e-134
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP 60
MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP
Sbjct: 1 MVPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGP 60
Query: 61 VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY 120
VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY
Sbjct: 61 VLLPPGAGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLDPPKVILIALTDKPVLGCRPEY 120
Query: 121 CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG 180
CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG
Sbjct: 121 CAPRVRRRKHPGLLFWPLCSGVNFVYCSLVQRGYGTRGCETQKWLGTQKGCRPGTCDLMG 180
Query: 181 GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK 219
GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK
Sbjct: 181 GGRRERNRQTWDRFGEAEREESEIAKGRCYSDFCVLCDK 219
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.6 bits (83), Expect = 0.017
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 20 SPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGPVLLPPGAGQPQKEDKSAWK 79
SPPL+ + P P Q+R + + + S MG P LLPP QP+ SA+
Sbjct: 2398 SPPLLDRARSRTPPSAPSQSR-MTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFS 2456
Query: 80 D 80
D
Sbjct: 2457 D 2457
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 36.2 bits (82), Expect = 0.022
Identities = 26/63 (41%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 10 PRLASAPPKGSPPLVKPL-APQR-PHGVPPQARALAPKESHSDVFEMGLVPGPVLLPPGA 67
P ASAPP G PL P AP P PP A AP + + VP PVL P A
Sbjct: 284 PVPASAPPSGPVPLSAPAPAPLSVPVSAPPLALIQAPVPPSAPTLVLAPVPTPVLAPMPA 343
Query: 68 GQP 70
P
Sbjct: 344 STP 346
>gi|45439357 elongin A2 [Homo sapiens]
Length = 753
Score = 35.0 bits (79), Expect = 0.050
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 3 PDRQNSCPRLASAPP---KGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPG 59
P + CPR+A A + SP PL + P G P A P H+ + G
Sbjct: 151 PRAERKCPRIAPADSGRYRASPTRTAPL--RMPEGPEPAAPGKQPGRGHTHAAQ----GG 204
Query: 60 PVLLPPGAGQPQ 71
P+L P GQPQ
Sbjct: 205 PLLCPGCQGQPQ 216
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 34.7 bits (78), Expect = 0.065
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 3 PDRQNSCPRLASAPPKGSPPLVKPLAPQRPH---GVPPQARALAPKESHSDVFEMGLVPG 59
P RQ P + PP+ +PPL +P RPH PP+A L E+ + G
Sbjct: 287 PARQQGSPGVLRVPPEAAPPLPRP----RPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLG 342
Query: 60 PVLLPPGA--GQPQKEDKSAWKDNRTTE 85
PV + G+P + + D R+ E
Sbjct: 343 PVAGAGSSFGGRPHRPSLALGSDRRSPE 370
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 34.7 bits (78), Expect = 0.065
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 3 PDRQNSCPRLASAPPKGSPPLVKPLAPQRPH---GVPPQARALAPKESHSDVFEMGLVPG 59
P RQ P + PP+ +PPL +P RPH PP+A L E+ + G
Sbjct: 377 PARQQGSPGVLRVPPEAAPPLPRP----RPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLG 432
Query: 60 PVLLPPGA--GQPQKEDKSAWKDNRTTE 85
PV + G+P + + D R+ E
Sbjct: 433 PVAGAGSSFGGRPHRPSLALGSDRRSPE 460
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 34.7 bits (78), Expect = 0.065
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 3 PDRQNSCPRLASAPPKGSPPLVKPLAPQRPH---GVPPQARALAPKESHSDVFEMGLVPG 59
P RQ P + PP+ +PPL +P RPH PP+A L E+ + G
Sbjct: 377 PARQQGSPGVLRVPPEAAPPLPRP----RPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLG 432
Query: 60 PVLLPPGA--GQPQKEDKSAWKDNRTTE 85
PV + G+P + + D R+ E
Sbjct: 433 PVAGAGSSFGGRPHRPSLALGSDRRSPE 460
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 34.7 bits (78), Expect = 0.065
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 10 PRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKE-SHSDVFEMGLVPGPVLLPPGAG 68
PR + P+ SP L L PQ P P A+ALAP SH D+F G P PP
Sbjct: 2333 PRASQVEPQ-SPGL--GLRPQEP----PPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTP 2385
Query: 69 QPQ 71
+PQ
Sbjct: 2386 RPQ 2388
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 34.7 bits (78), Expect = 0.065
Identities = 23/65 (35%), Positives = 25/65 (38%)
Query: 2 VPDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGPV 61
VP Q P + PP G PP P P G+PP AP P P
Sbjct: 397 VPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPR 456
Query: 62 LLPPG 66
LLPPG
Sbjct: 457 LLPPG 461
Score = 27.7 bits (60), Expect = 8.0
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 16 PPKGSPPLVKPLAPQRPHGVPPQARALAPK------ESHSDVFEMGLVPGPVLL--PPGA 67
PP+G PP + P AP P PP+ + P + +F +P P +L PP
Sbjct: 483 PPRGPPPRLPPPAP--PGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNL 540
Query: 68 GQ-PQKEDKSA 77
Q P+ +D SA
Sbjct: 541 IQRPKADDTSA 551
>gi|239750117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 33.9 bits (76), Expect = 0.11
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 8 SCPRLASAPPKGSPPLVKPLAPQRPHGV 35
SCP A+ PP+ P L+ L P PHGV
Sbjct: 66 SCPPPATIPPRPEPTLLTGLCPSSPHGV 93
>gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo
sapiens]
Length = 228
Score = 33.9 bits (76), Expect = 0.11
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 8 SCPRLASAPPKGSPPLVKPLAPQRPHGV 35
SCP A+ PP+ P L+ L P PHGV
Sbjct: 66 SCPPPATIPPRPEPTLLTGLCPSSPHGV 93
>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
Length = 494
Score = 33.5 bits (75), Expect = 0.14
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 3 PDRQNSCPRLASAP--PKGSPPLVKPLAPQRPHGVPPQARALAP------KESHSDVFEM 54
P Q P + AP P G PPL+ + P P G+PP + P K + S E
Sbjct: 141 PMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMP-GMPPVMPGMPPGLHHQRKYTQSFCGEN 199
Query: 55 GLVPGPVLLPPGAGQP 70
++P ++PPG G P
Sbjct: 200 IMMPMGGMMPPGPGIP 215
>gi|73808090 zinc finger protein 207 isoform b [Homo sapiens]
Length = 463
Score = 33.5 bits (75), Expect = 0.14
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 3 PDRQNSCPRLASAP--PKGSPPLVKPLAPQRPHGVPPQARALAP------KESHSDVFEM 54
P Q P + AP P G PPL+ + P P G+PP + P K + S E
Sbjct: 141 PMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMP-GMPPVMPGMPPGLHHQRKYTQSFCGEN 199
Query: 55 GLVPGPVLLPPGAGQP 70
++P ++PPG G P
Sbjct: 200 IMMPMGGMMPPGPGIP 215
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 33.1 bits (74), Expect = 0.19
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 9 CPRLASAPPKGSPPLVKPLAPQRPHGV--PPQARALAPKESHSDVFEMGLVPGPVLLPPG 66
CP A +P SPP P P P P A A+ P SH + ++P P P
Sbjct: 187 CPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRSHKPTVAVRILPAPPRPPIS 246
Query: 67 AGQP 70
+ P
Sbjct: 247 SPGP 250
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 33.1 bits (74), Expect = 0.19
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 9 CPRLASAPPKGSPPLVKPLAPQRPHGV--PPQARALAPKESHSDVFEMGLVPGPVLLPPG 66
CP A +P SPP P P P P A A+ P SH + ++P P P
Sbjct: 187 CPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRSHKPTVAVRILPAPPRPPIS 246
Query: 67 AGQP 70
+ P
Sbjct: 247 SPGP 250
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 33.1 bits (74), Expect = 0.19
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 9 CPRLASAPPKGSPPLVKPLAPQRPHGV--PPQARALAPKESHSDVFEMGLVPGPVLLPPG 66
CP A +P SPP P P P P A A+ P SH + ++P P P
Sbjct: 187 CPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRSHKPTVAVRILPAPPRPPIS 246
Query: 67 AGQP 70
+ P
Sbjct: 247 SPGP 250
>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.32
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 8 SCPRLASAP-PKGS--PPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGPVLLP 64
S PR ++ P P+G P L+ LA RPHG R + F G P P P
Sbjct: 117 SPPRSSAHPGPRGPLFPALLAALA--RPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRP 174
Query: 65 P--GAGQPQKEDKSAWKDNRTTEPSGRCSSELG 95
P G SAWK + T+ PS CS G
Sbjct: 175 PAHARGAHAHRGGSAWKRSPTSSPS--CSEGNG 205
>gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.32
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 8 SCPRLASAP-PKGS--PPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGPVLLP 64
S PR ++ P P+G P L+ LA RPHG R + F G P P P
Sbjct: 117 SPPRSSAHPGPRGPLFPALLAALA--RPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRP 174
Query: 65 P--GAGQPQKEDKSAWKDNRTTEPSGRCSSELG 95
P G SAWK + T+ PS CS G
Sbjct: 175 PAHARGAHAHRGGSAWKRSPTSSPS--CSEGNG 205
>gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 32.3 bits (72), Expect = 0.32
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 8 SCPRLASAP-PKGS--PPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGPVLLP 64
S PR ++ P P+G P L+ LA RPHG R + F G P P P
Sbjct: 117 SPPRSSAHPGPRGPLFPALLAALA--RPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRP 174
Query: 65 P--GAGQPQKEDKSAWKDNRTTEPSGRCSSELG 95
P G SAWK + T+ PS CS G
Sbjct: 175 PAHARGAHAHRGGSAWKRSPTSSPS--CSEGNG 205
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 32.3 bits (72), Expect = 0.32
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 16 PPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGPV-LLPPGAGQPQKED 74
PP+ PPL P P P +PP+A +L P V PV LLPP K
Sbjct: 553 PPQPQPPLPPPPPPPPPPQLPPEAESLTPMVMPVSV--------PVKLLPP------KPS 598
Query: 75 KSAWKDNRTTEPSGR 89
+ ++ PS R
Sbjct: 599 SQGFTNSTVAAPSAR 613
>gi|116174780 SEC24 related gene family, member A [Homo sapiens]
Length = 1093
Score = 32.3 bits (72), Expect = 0.32
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 3 PDRQNSCPRLA-SAPPKGSPPLVKPLAPQRPHGV-----PPQARALAP-KESHSDV 51
P QNS + S PP +PPL P PHG PP RAL P S+ DV
Sbjct: 179 PSLQNSFIKSGPSVPPLVNPPLPTTFQPGAPHGPPPAGGPPPVRALTPLTSSYRDV 234
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 32.3 bits (72), Expect = 0.32
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 16 PPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPG--PVLLPPGAGQPQKE 73
PP G PP + P QRP +PP ++ P M PG PV P P E
Sbjct: 81 PPGGIPPPMGPPHLQRPPFMPPPMSSMPPPPG------MMFPPGMPPVTAPGTPALPPTE 134
Query: 74 DKSAWKDNRTTEPSGR 89
+ W +N+T P G+
Sbjct: 135 E--IWVENKT--PDGK 146
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 32.3 bits (72), Expect = 0.32
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 16 PPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPG--PVLLPPGAGQPQKE 73
PP G PP + P QRP +PP ++ P M PG PV P P E
Sbjct: 81 PPGGIPPPMGPPHLQRPPFMPPPMSSMPPPPG------MMFPPGMPPVTAPGTPALPPTE 134
Query: 74 DKSAWKDNRTTEPSGR 89
+ W +N+T P G+
Sbjct: 135 E--IWVENKT--PDGK 146
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 32.0 bits (71), Expect = 0.42
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 10 PRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGPVLLPPGAGQ 69
P PP SPP + +RP + +A P E+H ++E L P P+ P
Sbjct: 622 PPAPPPPPAPSPPPAPATSSRRP--LLLRAPQFTPSEAHLKIYESVLTPPPLGAPEA--- 676
Query: 70 PQKEDKSAWKDNRTTEPSGR 89
P+ E A D+ EP R
Sbjct: 677 PEPEPPPA--DDSPAEPEPR 694
>gi|18105007 carbamoylphosphate synthetase 2/aspartate
transcarbamylase/dihydroorotase [Homo sapiens]
Length = 2225
Score = 32.0 bits (71), Expect = 0.42
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 53 EMGLVPGPVLLPPGAGQPQKEDKSAWKDNRTTE--PSGRCSSELGRRLDPPKVILIALTD 110
E+ + G VL+PPG GQ D W + PS +SE+ + P+ + L D
Sbjct: 1791 EVAYIDGQVLVPPGYGQ----DVRKWPQGAVPQLPPSAPATSEMTTTPERPRRGIPGLPD 1846
Query: 111 KPVLGCRPEYCAPRVRRRKHPGL 133
+ PR+ R PGL
Sbjct: 1847 GRF------HLPPRIHRASDPGL 1863
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 32.0 bits (71), Expect = 0.42
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 3 PDRQNSCPRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSDVFEMGLVPGPVL 62
P Q P + AP G PP + PL P GVPP + P G++P +
Sbjct: 141 PMAQPGLPPVPGAP--GMPPGIPPLMP----GVPPLMPGMPPV---MPGMPPGMMPMGGM 191
Query: 63 LPPGAGQP 70
+PPG G P
Sbjct: 192 MPPGPGIP 199
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 31.6 bits (70), Expect = 0.55
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 10 PRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSD---VFEMGLVPGPVLLPPG 66
P A PP+ PP LAP RP VP R P S S+ ++ +PGP L
Sbjct: 571 PTPAPTPPR-PPPGPATLAPSRPLLVPKAERLSPPAPSGSERRLSGDLSSMPGPGTLSVR 629
Query: 67 AGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLD 99
PQ D+ S+E RR +
Sbjct: 630 VSPPQPILSRGRPDSNKNRRITHISAEQKRRFN 662
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 31.6 bits (70), Expect = 0.55
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 10 PRLASAPPKGSPPLVKPLAPQRPHGVPPQARALAPKESHSD---VFEMGLVPGPVLLPPG 66
P A PP+ PP LAP RP VP R P S S+ ++ +PGP L
Sbjct: 571 PTPAPTPPR-PPPGPATLAPSRPLLVPKAERLSPPAPSGSERRLSGDLSSMPGPGTLSVR 629
Query: 67 AGQPQKEDKSAWKDNRTTEPSGRCSSELGRRLD 99
PQ D+ S+E RR +
Sbjct: 630 VSPPQPILSRGRPDSNKNRRITHISAEQKRRFN 662
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,852,280
Number of Sequences: 37866
Number of extensions: 692075
Number of successful extensions: 3453
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 3151
Number of HSP's gapped (non-prelim): 461
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.