Guide to the Human Genome
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Search of human proteins with 239757093

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757093 PREDICTED: hypothetical protein [Homo sapiens]
         (192 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757093 PREDICTED: hypothetical protein [Homo sapiens]           404   e-113
gi|239751599 PREDICTED: hypothetical protein XP_002347926 [Homo ...   404   e-113
gi|239746114 PREDICTED: hypothetical protein XP_002344193 [Homo ...   404   e-113
gi|119433677 chloride channel 1, skeletal muscle [Homo sapiens]        39   0.004
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ...    36   0.023
gi|21536476 diphthamide biosynthesis protein 2 isoform a [Homo s...    36   0.023
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    35   0.039
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    35   0.039
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]    34   0.067
gi|92859678 small nuclear RNA activating complex, polypeptide 4,...    34   0.067
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int...    34   0.087
gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo ...    33   0.11 
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    33   0.11 
gi|22748653 arrestin domain containing 1 [Homo sapiens]                33   0.11 
gi|24497517 homeobox A5 [Homo sapiens]                                 33   0.15 
gi|239741790 PREDICTED: hypothetical protein XP_002342301 [Homo ...    33   0.15 
gi|116089331 human immunodeficiency virus type I enhancer bindin...    33   0.15 
gi|38202224 discs large-associated protein 2 [Homo sapiens]            33   0.19 
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    33   0.19 
gi|238550198 synaptotagmin III [Homo sapiens]                          32   0.25 
gi|238550196 synaptotagmin III [Homo sapiens]                          32   0.25 
gi|14150054 synaptotagmin III [Homo sapiens]                           32   0.25 
gi|45120115 hypothetical protein LOC56905 [Homo sapiens]               32   0.25 
gi|239735519 SET binding factor 1 [Homo sapiens]                       32   0.33 
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]            32   0.33 
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ...    32   0.33 
gi|24308069 zinc finger protein 521 [Homo sapiens]                     32   0.33 
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]             32   0.33 
gi|154146231 DMRT-like family A2 [Homo sapiens]                        32   0.33 
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          32   0.33 

>gi|239757093 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 192

 Score =  404 bits (1039), Expect = e-113
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
           MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV
Sbjct: 1   MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60

Query: 61  QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
           QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA
Sbjct: 61  QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120

Query: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
           LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG
Sbjct: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180

Query: 181 KHGMALCPLEHD 192
           KHGMALCPLEHD
Sbjct: 181 KHGMALCPLEHD 192


>gi|239751599 PREDICTED: hypothetical protein XP_002347926 [Homo
           sapiens]
          Length = 192

 Score =  404 bits (1039), Expect = e-113
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
           MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV
Sbjct: 1   MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60

Query: 61  QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
           QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA
Sbjct: 61  QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120

Query: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
           LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG
Sbjct: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180

Query: 181 KHGMALCPLEHD 192
           KHGMALCPLEHD
Sbjct: 181 KHGMALCPLEHD 192


>gi|239746114 PREDICTED: hypothetical protein XP_002344193 [Homo
           sapiens]
          Length = 192

 Score =  404 bits (1039), Expect = e-113
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
           MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV
Sbjct: 1   MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60

Query: 61  QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
           QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA
Sbjct: 61  QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120

Query: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
           LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG
Sbjct: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180

Query: 181 KHGMALCPLEHD 192
           KHGMALCPLEHD
Sbjct: 181 KHGMALCPLEHD 192


>gi|119433677 chloride channel 1, skeletal muscle [Homo sapiens]
          Length = 988

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 15/95 (15%)

Query: 23  RGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP---- 78
           +  LAG GLP APPG+      +D      L   S + +LP  L +  +T +P  P    
Sbjct: 689 KARLAGEGLPGAPPGRPESFAFVDEDEDEDL---SGKSELPPSLALHPSTTAPLSPEEPN 745

Query: 79  -PLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFH 112
            PLP  KQ        PE   PAG+   +  S  H
Sbjct: 746 GPLPGHKQQ-------PEAPEPAGQRPSIFQSLLH 773


>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
            sapiens]
          Length = 1336

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 54/178 (30%), Positives = 65/178 (36%), Gaps = 31/178 (17%)

Query: 3    YASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQL 62
            Y  P  PQG+    GLG A        G PL+PP    QP      +     +A  R + 
Sbjct: 964  YYGPIEPQGLGL--GLGEARAAPRGAAGRPLSPPA--AQPPQ----KPPPSYFAIVRDKE 1015

Query: 63   PCCLTIAATTESPSPPPLPTEKQSH------RVAGSPPEVAGPAGRHRVMPGSCFHVSCS 116
            P      A    PSPP  P    +       R+A        PA   R  P S       
Sbjct: 1016 PAEPPAGAFPGFPSPPAPPAAAATAVGPPLCRLAFEDESPPAPARWPRSDPES------- 1068

Query: 117  KHQALLGNTPSASGLGGTCPAS----AWPSVRVKGPNPGPLEELARTAFPTHSETSET 170
              Q LLG  P A G GGT  A     A P      P P P  +L  +  P+ SE SE+
Sbjct: 1069 --QPLLG--PGAGGAGGTGGAGGGAPAAPPPCRAAPPPCPYLDLEPS--PSDSEDSES 1120


>gi|21536476 diphthamide biosynthesis protein 2 isoform a [Homo
           sapiens]
          Length = 489

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 40/131 (30%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 60  VQLPCCLTIAATTESPS---PPPLPTEKQSHRVAGSPPEVAGPAGRHR--VMPGSCFHVS 114
           V L C L   A   S S   P   P E ++      PP    P   H   ++PGS FHV+
Sbjct: 337 VLLACPLGALAPQLSGSFFQPILAPCELEAACNPAWPPPGLAPHLTHYADLLPGSPFHVA 396

Query: 115 CSKHQALLGNTPSASGLGGTC-PASAWPSVRVKGP---NPGPLEELARTAFPTHSETSET 170
               ++ L  TP  S + G   P  AW S    G     P P  ELA ++ P  S  S  
Sbjct: 397 LPPPESELWETPDVSLITGDLRPPPAWKSSNDHGSLALTPRPQLELAESS-PAASFLSSR 455

Query: 171 AQMSINTRMGK 181
           +   +  R+G+
Sbjct: 456 SWQGLEPRLGQ 466


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 22/110 (20%)

Query: 12  IAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAAT 71
           +A  +   A +RG + G  L L+P  + R+P   D   K  ++W   +       + AA 
Sbjct: 631 VARREARPARARGEIGG--LSLSPSPERRKPPPPDPATKPKVSWIHGK------HSAAAA 682

Query: 72  TESPSPPP--------------LPTEKQSHRVAGSPPEVAGPAGRHRVMP 107
             +PSPPP               P++K +H V    P    P  R   +P
Sbjct: 683 GRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLP 732


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 22/110 (20%)

Query: 12  IAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAAT 71
           +A  +   A +RG + G  L L+P  + R+P   D   K  ++W   +       + AA 
Sbjct: 626 VARREARPARARGEIGG--LSLSPSPERRKPPPPDPATKPKVSWIHGK------HSAAAA 677

Query: 72  TESPSPPP--------------LPTEKQSHRVAGSPPEVAGPAGRHRVMP 107
             +PSPPP               P++K +H V    P    P  R   +P
Sbjct: 678 GRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLP 727


>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
          Length = 2608

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 13/103 (12%)

Query: 77  PPPLPTEKQS--HRVAGSPPEVA--GPAGRH--RVMPGSCFH--VSCSKHQA---LLGNT 125
           PP L +E+ S  HR A +   +A  GPA +      PG  F   +  + H A   L+G++
Sbjct: 9   PPHLLSERGSLGHRSAAAAARLAPAGPAAQPPAHFQPGKYFPSPLPMASHTASSRLMGSS 68

Query: 126 PSASGLGG--TCPASAWPSVRVKGPNPGPLEELARTAFPTHSE 166
           P++S +G   T    +  S    GP+  P E+  R + PT S+
Sbjct: 69  PASSFMGSFLTSSLGSAASTHPSGPSSSPPEQAYRGSHPTTSQ 111


>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
            190kDa [Homo sapiens]
          Length = 1469

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 7    CPPQGIAATKGLGAASRGALAGTGLPLAPP----GKNRQPIHLDHLRKASLTWASPRVQL 62
            CP  G+  ++   A+ +      GLP APP      +  P+ +  L    +        +
Sbjct: 1018 CPESGLGQSQAPAASRK-----QGLPEAPPFLPAAPSPTPLPVQPLSLTHIGGPHVATSV 1072

Query: 63   PCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALL 122
            P  +T   T +   P P+P      R AG+P    GPAG    +               L
Sbjct: 1073 PLPVTWVLTAQGLLPVPVPAVVSLPRPAGTP----GPAGLLATL------------LPPL 1116

Query: 123  GNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQ 172
              T +A G      +S+W         P P       A PTH+ +   A+
Sbjct: 1117 TETRAAQGPRAPALSSSWQPPANMNREPEPSCRTDTPAPPTHALSQSPAE 1166


>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
           interacting protein [Homo sapiens]
          Length = 1211

 Score = 33.9 bits (76), Expect = 0.087
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 25/149 (16%)

Query: 5   SPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPC 64
           S CP   +    G     R A  GT LP  P  K    ++ +   + + ++         
Sbjct: 521 SECPEMPLPLIPG----ERQAGDGTSLPETPNPKMMSAVYAELESRLNSSFKGK------ 570

Query: 65  CLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAG-RHRVMPGSCFHVSCSKHQALLG 123
              +   ++S + PP P    S  V   P  ++G +    R++P  C+H  CS   A   
Sbjct: 571 ---MGTVSKSRASPPGP----SPAVTTGPRTLSGVSWPSERLLPSPCYHPLCSGGLA--- 620

Query: 124 NTPSASGLGGTCPASAWPSVRVKGPNPGP 152
            +PS+S    + P ++  S R   P PGP
Sbjct: 621 -SPSSS---ESHPYASLDSSRAPSPQPGP 645


>gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo
           sapiens]
          Length = 244

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 74  SPSPPPLPTEKQSHR--VAGSP--PEVAGPAGRHRVMPGSCFHVS-CSKHQALLGNTPSA 128
           SP+PP  PT +QS R  VA +P  P    P  + R +P +   +  C     L    P+ 
Sbjct: 102 SPAPPGPPTSRQSPRISVAAAPVLPAAPRPPTQRRCVPVAQRGLPLCGTGLGLETRRPAR 161

Query: 129 SGLGGTCPASAWPSVRVKGPNP 150
           S LG T     +P    K P P
Sbjct: 162 SCLGETAAPFRFPRCECKPPTP 183


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
          Length = 1747

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 17/96 (17%)

Query: 5    SPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWA-SPRVQLP 63
            SP  P  +   +GLGA + GA  G    L PP           L+ +SL+    P+    
Sbjct: 1593 SPVKPASLERVEGLGAGAGGA--GRPFGLTPP---------TILKSSSLSIPHEPKEVRF 1641

Query: 64   CCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGP 99
               +++A + SPSP PLP+       +G  P   GP
Sbjct: 1642 VVRSVSARSRSPSPSPLPSP-----ASGPGPGAPGP 1672


>gi|22748653 arrestin domain containing 1 [Homo sapiens]
          Length = 433

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 43  IHLDHLRKASLTWASPRVQLPCCLTIAATTESP-SPPP---LPTEKQSHRVAGSPPEV-- 96
           IH+D+  + SL      V LP  +   A   +P SP P   LP       V  +PP+   
Sbjct: 258 IHIDYYLQVSLKAPEATVTLPVFIGNIAVNHAPVSPRPGLGLPPGAPPLVVPSAPPQEEA 317

Query: 97  ---AGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPASAWPS 142
              A   G H + P      S S+ Q LL    S  G    CP    P+
Sbjct: 318 EAEAAAGGPHFLDPVFLSTKSHSQRQPLLATLSSVPGAPEPCPQDGSPA 366


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 51  ASLTWASPRVQLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSC 110
           AS   A PR   P     A +T SP P PLP       VA SP   +   G++ +   S 
Sbjct: 77  ASAAPAEPRYSQP-----ATSTHSPQPDPLPCS----AVAPSPGSDSHHGGKNSLSNSSG 127

Query: 111 FHVSC-SKHQALLGNTPSASGLGGTCPASAWPSVRVKGPNPGP 152
                 S H +      +ASG     PAS+  +     P+P P
Sbjct: 128 ASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAP 170


>gi|239741790 PREDICTED: hypothetical protein XP_002342301 [Homo
           sapiens]
          Length = 164

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 73  ESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLG 132
           E+P  P   T    H  +G PPE+  P GR  +  G CF  +   H+ L+   P      
Sbjct: 35  ETPEEPTQQTSILDHMCSG-PPEL--PWGR-TLGSGQCFPNNSPMHRCLVDILPLT---- 86

Query: 133 GTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQ 172
                 +W S  +  P P P  +  +T   TH E+S  A+
Sbjct: 87  ----LLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWAK 122


>gi|116089331 human immunodeficiency virus type I enhancer binding
            protein 3 [Homo sapiens]
          Length = 2406

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 53/195 (27%), Positives = 69/195 (35%), Gaps = 48/195 (24%)

Query: 34   APPGKNRQPIHLDHLR-KASLTWASPRVQLP----CCL------------TIAATTESPS 76
            +PPG     +H+D  R   +L   SPR+QL     C L             +  TT+   
Sbjct: 2009 SPPG-----LHVDPGRGMGALPCGSPRLQLSPLTLCPLGRELAPRAHVLSKLEGTTDPGL 2063

Query: 77   PPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSA-------- 128
            P   PT + S   A SPP  A P       PGS    S  +H   LG  P          
Sbjct: 2064 PRYSPTRRWSPGQAESPPRSAPPGKWALAGPGS---PSAGEHGPGLGLDPRVLFPPAPLP 2120

Query: 129  ----SGLGGTCPASAWPSVRVKGP--NPGPLEELARTAFPT----HSETSETAQMSINTR 178
                S    TC AS W     + P  +PGP   L+   F      H       + +I + 
Sbjct: 2121 HKLLSRSPETC-ASPWQKAESRSPSCSPGPAHPLSSRPFSALHDFHGHILARTEENIFSH 2179

Query: 179  MGKHGMAL----CPL 189
            +  H   L    CPL
Sbjct: 2180 LPLHSQHLTRAPCPL 2194


>gi|38202224 discs large-associated protein 2 [Homo sapiens]
          Length = 975

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 78  PPLPTEKQSHRVAGSPPEVAGPA-----GRHRVMPGSCFHVSCSKHQALLGNTPSAS 129
           PP   E   H     PP +  PA     GRHR  P S  H  C     +LG+  S+S
Sbjct: 23  PPEDCEHLHHGPDARPPYLLSPADSCPGGRHRCSPRSSVHSECVMMPVVLGDHVSSS 79


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 46/185 (24%), Positives = 63/185 (34%), Gaps = 30/185 (16%)

Query: 6   PCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCC 65
           P PP+  ++ +    A RG+LA   LP+APP  +  P  LD L  A+      R   P  
Sbjct: 730 PHPPEDDSSLR----AERGSLAD--LPMAPPA-SAPPEFLDPLMGAAAPQYPGRGPPPA- 781

Query: 66  LTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNT 125
                    P PPP P        +  PP      G     PG       S ++     +
Sbjct: 782 --------PPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGP--KPGDSGYETETPFS 831

Query: 126 PSASGLGGTC------------PASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQM 173
           P  +  GG              P    P      P+PGPL        PT      T Q+
Sbjct: 832 PEGAFPGGGAAEEEGVPRPRAPPEPPDPGAPRPPPDPGPLPLPGPREKPTFVVQVSTEQL 891

Query: 174 SINTR 178
            ++ R
Sbjct: 892 LMSLR 896


>gi|238550198 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 27  AGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP-------- 78
           AG+GL L PP     P    H +  SL   +    LP  LT    T  P P         
Sbjct: 194 AGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDPSSEERPPAL 253

Query: 79  --PLPTEKQSHRVAGS-PPEV---AGPAGR 102
             PLP  ++  ++ G   PE+    GP GR
Sbjct: 254 PLPLPGGEEKAKLIGQIKPELYQGTGPGGR 283


>gi|238550196 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 27  AGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP-------- 78
           AG+GL L PP     P    H +  SL   +    LP  LT    T  P P         
Sbjct: 194 AGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDPSSEERPPAL 253

Query: 79  --PLPTEKQSHRVAGS-PPEV---AGPAGR 102
             PLP  ++  ++ G   PE+    GP GR
Sbjct: 254 PLPLPGGEEKAKLIGQIKPELYQGTGPGGR 283


>gi|14150054 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 27  AGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP-------- 78
           AG+GL L PP     P    H +  SL   +    LP  LT    T  P P         
Sbjct: 194 AGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDPSSEERPPAL 253

Query: 79  --PLPTEKQSHRVAGS-PPEV---AGPAGR 102
             PLP  ++  ++ G   PE+    GP GR
Sbjct: 254 PLPLPGGEEKAKLIGQIKPELYQGTGPGGR 283


>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
          Length = 1047

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 16/143 (11%)

Query: 30  GLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPPPLPTEKQSHRV 89
           GLP  P   +  P    H   A + +   ++  P  L  A    +P+  P PT+      
Sbjct: 627 GLPGVPVTTDAMPRTNFHSSVAFM-FRKFKILRPAPLPAAVVPSTPTSAPAPTQP----- 680

Query: 90  AGSPPEVAGPAG----RHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPASAWPSVRV 145
             +P   +GP G      + +  +CF ++     A+   +P+ +      PA A      
Sbjct: 681 --APTPTSGPIGLRILAQQPLSVTCFSLALPSPPAVAVASPAPAPAPSPAPARAQAPASA 738

Query: 146 KGPNPGPLEELARTAFPTHSETS 168
           + P P P    A  A P  + TS
Sbjct: 739 RDPAPAP----APVAGPAPASTS 757



 Score = 30.4 bits (67), Expect = 0.97
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 52  SLTWASPRVQLPCCLTIAATTESPSPPPLPTEKQ----SHRVAGSPPEVAGPAGRHRVMP 107
           S+T  S  +  P  + +A+   +P+P P P   Q    +   A +P  VAGPA      P
Sbjct: 700 SVTCFSLALPSPPAVAVASPAPAPAPSPAPARAQAPASARDPAPAPAPVAGPAPASTSAP 759

Query: 108 G 108
           G
Sbjct: 760 G 760


>gi|239735519 SET binding factor 1 [Homo sapiens]
          Length = 1893

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 80   LPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHV-----SCSKHQALLGNTPSASGLGGT 134
            L  EK    V  S P  A  +GR+ +   S  H+     S       L N  +AS    T
Sbjct: 1239 LEQEKYLQAVVSSMPRYADASGRNTLSGFSSAHMGSHVPSPRARVTTLSNPMAASASRRT 1298

Query: 135  CPASAWPSVRVKGPNPG 151
             P   W SVR  G + G
Sbjct: 1299 APRGKWGSVRTSGRSSG 1315


>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 263

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 98  GPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELA 157
           G  GR R    +   +  S+  A    T  + GL GT PA AWP +     +     E  
Sbjct: 147 GAQGRRRRACRTSLRLGASRRLAWSPRT--SPGLRGTSPAQAWPCLLQASESFSAFREPQ 204

Query: 158 RTAFPTHSETSET 170
           R  FP ++   E+
Sbjct: 205 RGTFPANAAAKES 217


>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
           sapiens]
          Length = 263

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 98  GPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELA 157
           G  GR R    +   +  S+  A    T  + GL GT PA AWP +     +     E  
Sbjct: 147 GAQGRRRRACRTSLRLGASRRLAWSPRT--SPGLRGTSPAQAWPCLLQASESFSAFREPQ 204

Query: 158 RTAFPTHSETSET 170
           R  FP ++   E+
Sbjct: 205 RGTFPANAAAKES 217


>gi|24308069 zinc finger protein 521 [Homo sapiens]
          Length = 1311

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 66  LTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSK 117
           L++ ++T   + PP+P  +   R A   P++ GP+ +   +  SC +  C+K
Sbjct: 363 LSVDSSTMVEAAPPIPKSRGRKRAAQQTPDMTGPSSKQAKVTYSCIY--CNK 412


>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
          Length = 1247

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 77   PPPLPTEKQSHRVA-GSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTC 135
            PPP+P +K   R+A G  P   GP+G        C  V               S    T 
Sbjct: 984  PPPVPAKKSRERLANGLHPVPMGPSGALPSPDAPCLPVK------------RGSPASPTS 1031

Query: 136  PASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMGKHGMALCP 188
            P+   P++      P PL   A  + P+       +++  NT + +HG+ L P
Sbjct: 1032 PSDCPPALA-----PRPLSGQAPGSPPSTRPPPWLSELPENTSLQEHGVKLGP 1079


>gi|154146231 DMRT-like family A2 [Homo sapiens]
          Length = 542

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 44/153 (28%), Positives = 57/153 (37%), Gaps = 26/153 (16%)

Query: 19  GAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP 78
           G    GA AGTG   A  G +        L+K  L         P  L  A    SP PP
Sbjct: 166 GGPGAGAPAGTGGGAAGAGGSEAK-----LQKFDL--------FPKTLLQAGRPGSPLPP 212

Query: 79  PLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPAS 138
           P+  +  S   A S P  + P     V PGS       +  +      ++   GG+CP S
Sbjct: 213 PV--KPLSPDGADSGPGTSSP----EVRPGSGSENGDGESFSGSPLARASKEAGGSCPGS 266

Query: 139 AWPSVRVKGPNPGPLEELARTAFPTHSETSETA 171
           A       GP  G  E+   +A P  SE+   A
Sbjct: 267 A-------GPGGGGEEDSPGSASPLGSESGSEA 292


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 24/131 (18%)

Query: 29  TGLPLAP-PGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPS--PPPLPTEKQ 85
           T +P  P P  ++ P HL      S+    P       L+  +T   PS  PPPL    Q
Sbjct: 380 TPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQ 439

Query: 86  SHRVAGSPPEVAG---------------PAGRHRVMPGSCFHVSCSKHQALLGNTPSASG 130
           S  +  SP +  G               P G H+V P   F    ++H  + G  P  + 
Sbjct: 440 SQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPF----AQHPFVPGGPPPIT- 494

Query: 131 LGGTCPASAWP 141
              TCP+++ P
Sbjct: 495 -PPTCPSTSTP 504


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,473,654
Number of Sequences: 37866
Number of extensions: 614036
Number of successful extensions: 2941
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 2743
Number of HSP's gapped (non-prelim): 427
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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