CLCN1 2330

Name: CLCN1	Sequence: fasta or formatted (988aa)		NCBI GI: 119433677
Description: chloride channel 1, skeletal muscle		Referenced in: Chloride Channels
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 73 3 C cysteine 1.8 18 2 D aspartate 4.1 41 2 E glutamate 6.3 62 3 F phenylalanine 5.1 50 2 G glycine 7.7 76 2 H histidine 2.5 25 2 I isoleucine 4.8 47 3 K lysine 4.3 42 3 L leucine 11.4 113 2 M methionine 2.8 28 2 N asparagine 1.5 15 2 P proline 7.2 71 2 Q glutamine 4.6 45 2 R arginine 4.0 40 2 S serine 7.7 76 3 T threonine 5.4 53 3 V valine 7.4 73 2 W tryptophan 1.4 14 2 Y tyrosine 2.6 26 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 chloride channel 1, skeletal muscle CLCN2 0.429 chloride channel 2 CLCNKA 0.236 chloride channel Ka isoform 1 CLCNKA 0.236 chloride channel Ka isoform 2 CLCNKB 0.232 chloride channel Kb CLCN5 0.093 chloride channel 5 isoform a CLCN5 0.093 chloride channel 5 isoform a CLCN5 0.093 chloride channel 5 isoform b CLCN4 0.089 chloride channel 4 CLCN3 0.086 chloride channel 3 isoform e CLCN3 0.086 chloride channel 3 isoform b CLCN7 0.080 chloride channel 7 isoform b CLCN7 0.080 chloride channel 7 isoform a CLCN6 0.071 chloride channel 6 isoform ClC-6a CLCN6 0.040 chloride channel 6 isoform ClC-6c CLCN6 0.024 chloride channel 6 isoform ClC-6d CLCN6 0.024 chloride channel 6 isoform ClC-6b LOC100292544 0.007 PREDICTED: hypothetical protein LOC100290107 0.007 PREDICTED: hypothetical protein XP_002347926 LOC100287367 0.007 PREDICTED: hypothetical protein XP_002344193 PELP1 0.007 proline, glutamic acid and leucine rich protein 1 [... KIF18B 0.007 kinesin family member 18B ARHGAP17 0.006 nadrin isoform 1 ARHGAP17 0.006 nadrin isoform 2 SF3A1 0.006 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... SF3A1 0.006 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... SPEG 0.006 SPEG complex locus BASP1 0.006 brain abundant, membrane attached signal protein 1 [... PHF23 0.006 PHD finger protein 23 KDM6B 0.006 lysine (K)-specific demethylase 6B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.