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Search of human proteins with 239756916
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
(464 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens] 956 0.0
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ... 915 0.0
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ... 772 0.0
gi|169183786 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169179717 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169180121 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 39 0.010
gi|68563515 keratinocyte proline-rich protein [Homo sapiens] 39 0.010
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 39 0.013
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 38 0.017
gi|116089331 human immunodeficiency virus type I enhancer bindin... 38 0.017
gi|189181750 human immunodeficiency virus type I enhancer bindin... 38 0.022
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 37 0.038
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.038
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.038
gi|40018612 MyoD family inhibitor domain containing protein isof... 37 0.050
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 36 0.065
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 36 0.065
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 36 0.065
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 36 0.065
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 36 0.085
gi|145309328 papilin [Homo sapiens] 36 0.085
gi|148833508 notch1 preproprotein [Homo sapiens] 35 0.14
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 35 0.14
gi|239746532 PREDICTED: ankyrin repeat domain 60 [Homo sapiens] 35 0.14
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 35 0.14
>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 956 bits (2472), Expect = 0.0
Identities = 464/464 (100%), Positives = 464/464 (100%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
Query: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPGPGPPEARAGIRPRLTVDV 180
PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPGPGPPEARAGIRPRLTVDV
Sbjct: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPGPGPPEARAGIRPRLTVDV 180
Query: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAVTLTLDGAEAPALVFAVVLGGGT 240
GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAVTLTLDGAEAPALVFAVVLGGGT
Sbjct: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAVTLTLDGAEAPALVFAVVLGGGT 240
Query: 241 PQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGMRHWPLRVWSPRSRVPGLDMLLVR 300
PQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGMRHWPLRVWSPRSRVPGLDMLLVR
Sbjct: 241 PQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGMRHWPLRVWSPRSRVPGLDMLLVR 300
Query: 301 APRSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQ 360
APRSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQ
Sbjct: 301 APRSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQ 360
Query: 361 RWAGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGR 420
RWAGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGR
Sbjct: 361 RWAGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGR 420
Query: 421 SAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 464
SAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL
Sbjct: 421 SAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 464
>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
sapiens]
Length = 522
Score = 915 bits (2365), Expect = 0.0
Identities = 460/522 (88%), Positives = 460/522 (88%), Gaps = 58/522 (11%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
Query: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPGPGPPEARAGIRPRLTVDV 180
PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVEL GPGPPEARAGIRPRLTVDV
Sbjct: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDV 180
Query: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAA---------------VTLTLDGA 225
GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAA LTLDGA
Sbjct: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 240
Query: 226 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDG--------- 276
EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDG
Sbjct: 241 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 300
Query: 277 ----------------------------------MRHWPLRVWSPRSRVPGLDMLLVRAP 302
MRHWPLRVWSPRSRVPGLDMLLVRAP
Sbjct: 301 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 360
Query: 303 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 362
RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW
Sbjct: 361 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 420
Query: 363 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 422
AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA
Sbjct: 421 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 480
Query: 423 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 464
AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL
Sbjct: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 522
>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
Length = 490
Score = 772 bits (1993), Expect = 0.0
Identities = 409/522 (78%), Positives = 410/522 (78%), Gaps = 90/522 (17%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLP + P G A
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLPVQAAGCAGARC 120
Query: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPGPGPPEARAGIRPRLTVDV 180
PQ G L KS K GPGPPEARAGIRPRLTVDV
Sbjct: 121 PQ-------------GWL----------KSGK---------GPGPPEARAGIRPRLTVDV 148
Query: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAA---------------VTLTLDGA 225
GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAA LTLDGA
Sbjct: 149 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 208
Query: 226 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDG--------- 276
EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDG
Sbjct: 209 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 268
Query: 277 ----------------------------------MRHWPLRVWSPRSRVPGLDMLLVRAP 302
MRHWPLRVWSPRSRVPGLDMLLVRAP
Sbjct: 269 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 328
Query: 303 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 362
RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW
Sbjct: 329 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 388
Query: 363 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 422
AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA
Sbjct: 389 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 448
Query: 423 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 464
AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL
Sbjct: 449 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 490
>gi|169183786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 369 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 428
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 429 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 458
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169179717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 369 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 428
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 429 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 458
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169180121 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 369 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 428
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 429 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 458
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.006
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 310 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 366
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 367 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 422
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 423 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 453
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.006
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 310 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 366
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 367 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 422
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 423 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 453
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.006
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 310 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 366
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 367 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 422
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 423 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 453
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 38.9 bits (89), Expect = 0.010
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 377 PPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRA 436
PP S PC+P L M LA G G R AGR G E RA+
Sbjct: 120 PPKPSGSPCTPLLPMAGVLA-------QNGSASAPGTVRRLAGRFEGGAEGRAQDADAPE 172
Query: 437 PSPSAALSGRGDRGR----TGATRCGSPEAGL 464
P A G+R +G+ G+P+AGL
Sbjct: 173 PGLQARADVNGEREAPLTGSGSQENGAPDAGL 204
>gi|68563515 keratinocyte proline-rich protein [Homo sapiens]
Length = 579
Score = 38.9 bits (89), Expect = 0.010
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 60 SLGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEE--RSPWEAKSPRGPYA 117
S G +G +L+ PR P F PR ++ SP + P P
Sbjct: 356 SCGPQPSWGASCPELRPHVEPRPLPSFCP---------PRRLDQCPESPLQRCPPPAPRP 406
Query: 118 ALRPQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPGPGP---PEARAGIRP 174
LRP+PC S + R L +LS+ C P + +P R P PG PE R ++P
Sbjct: 407 RLRPEPCISLEPRPRPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQP 466
Score = 30.0 bits (66), Expect = 4.6
Identities = 37/129 (28%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 63 SLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALRPQ 122
S S+ P +LQL PR PPR + + + LP E P PR +
Sbjct: 251 STSRCLPPPRRLQLFPRSCSPPR--RFEPCSSSYLPLRPSEGFPNYCTPPRRSEPIYNSR 308
Query: 123 PCASPLSQLRYLRG-----ELSDHCQPPLVSK-----SFKPIHRVELYPGPGP------P 166
P+S RG E+S C P V PI R GP P P
Sbjct: 309 CPRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQPSWGASCP 368
Query: 167 EARAGIRPR 175
E R + PR
Sbjct: 369 ELRPHVEPR 377
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 38.5 bits (88), Expect = 0.013
Identities = 55/190 (28%), Positives = 69/190 (36%), Gaps = 26/190 (13%)
Query: 31 GRAGRQHPRREKLTPW---LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLRPRPRG----- 82
G G HP + P + GP S+ P L L G PG + P P+G
Sbjct: 748 GMQGPPHPHGIQGGPGSQGIQGPVSQGP--LMGLNPRGMQGPPGPRENQGPAPQGMIMGH 805
Query: 83 PPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALRPQPCASPLSQLRYLRGELSDHC 142
PP+ + H LL G P E + P+ P P S L + LRG
Sbjct: 806 PPQEMRGPHPPGGLLGHG-----PQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQS 860
Query: 143 Q--PPLVSKSFKPIHRVELYPGP-GPPEARAGIRPRLTVDVGLLVDLRDAQQIRTLLLAA 199
Q PP S P ++ PGP G G P G + QQ +T LL
Sbjct: 861 QQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHP----SQGPI----PFQQQKTPLLGD 912
Query: 200 GPGLPPRQRG 209
GP P Q G
Sbjct: 913 GPRAPFNQEG 922
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 38.1 bits (87), Expect = 0.017
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 378 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 437
P A QP +P + + + P +RP+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQRPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 438 SPSAALSGR 446
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 38.1 bits (87), Expect = 0.017
Identities = 48/158 (30%), Positives = 57/158 (36%), Gaps = 27/158 (17%)
Query: 38 PRREKLTPWLPGPCSEPPTS-------LCSLGSLSQFGKPGAQLQLRPRPRGPPRFLTWV 90
PR W PG PP S L GS S G+ G L L PR PP L
Sbjct: 2064 PRYSPTRRWSPGQAESPPRSAPPGKWALAGPGSPSA-GEHGPGLGLDPRVLFPPAPLPH- 2121
Query: 91 HVALNLLPRGHEE-RSPWEAKSPRGPYAALRP-QPCAS-PLSQLRYLRGELSDHCQPPLV 147
LL R E SPW+ R P + P P +S P S L G + + +
Sbjct: 2122 ----KLLSRSPETCASPWQKAESRSPSCSPGPAHPLSSRPFSALHDFHGHILARTEENIF 2177
Query: 148 SKSFKPIHRVELYPGPGP---------PEARAGIRPRL 176
S P+H L P P +AR G P L
Sbjct: 2178 --SHLPLHSQHLTRAPCPLIPIGGIQMVQARPGAHPTL 2213
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 37.7 bits (86), Expect = 0.022
Identities = 50/158 (31%), Positives = 60/158 (37%), Gaps = 28/158 (17%)
Query: 38 PRREKLTPWLPGPCSEPPTS-------LCSLGSLSQFGKPGAQLQLRPRPRGPPRFLTWV 90
PR W PG PP S L GS S G+ G L L PR PP L
Sbjct: 2064 PRYSPTRRWSPGQAESPPRSAPPGKWALAGPGSPSA-GEHGPGLGLDPRVLFPPAPLPH- 2121
Query: 91 HVALNLLPRGHEE-RSPWEAKSPRGPYAALRP-QPCAS-PLSQLRYLRGELSDHCQPPLV 147
LL R E SPW+A+S R P + P P +S P S L G + + +
Sbjct: 2122 ----KLLSRSPETCASPWKAES-RSPSCSPGPAHPLSSRPFSALHDFHGHILARTEENIF 2176
Query: 148 SKSFKPIHRVELYPGPGP---------PEARAGIRPRL 176
S P+H L P P +AR G P L
Sbjct: 2177 --SHLPLHSQHLTRAPCPLIPIGGIQMVQARPGAHPTL 2212
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 37.0 bits (84), Expect = 0.038
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 390 KMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDR 449
+ R +P GRR + R G G RG GR+ G RG GRAP + GRG R
Sbjct: 56 RSRAAGSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRG-RGRAPE---RVGGRG-R 110
Query: 450 GRTGATRCGSPEA 462
GR A +P A
Sbjct: 111 GRGTAAPRAAPAA 123
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.0 bits (84), Expect = 0.038
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 378 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 437
P A QP +P + + + P ++P+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQKPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 438 SPSAALSGR 446
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.0 bits (84), Expect = 0.038
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 378 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 437
P A QP +P + + + P ++P+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQKPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 438 SPSAALSGR 446
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|40018612 MyoD family inhibitor domain containing protein isoform
p40 [Homo sapiens]
Length = 355
Score = 36.6 bits (83), Expect = 0.050
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 393 KTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRT 452
+ LA +PG +R + RR G GA T G G + + + PA +PS R R R
Sbjct: 47 RRLANFPGRKRRRRRRKGLGATTGGCGEAVS-----SLHPAPHSPSSVRPAGRRARRQRR 101
Query: 453 GATRCGSPEAG 463
GA P +G
Sbjct: 102 GAGSAERPMSG 112
Score = 32.3 bits (72), Expect = 0.94
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 396 APY-PGGRRPQG---RRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGR 451
AP+ P RP G RR RGAG+ S AG EA A GP G A +G G G
Sbjct: 82 APHSPSSVRPAGRRARRQRRGAGSAERPMSGAG-EALAPGPVG---PQRVAEAGGGQLGS 137
Query: 452 TGATRC 457
T +C
Sbjct: 138 TAQGKC 143
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 36.2 bits (82), Expect = 0.065
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 404 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 446
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 216 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 258
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 36.2 bits (82), Expect = 0.065
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 404 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 446
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 216 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 258
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 36.2 bits (82), Expect = 0.065
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 404 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 446
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 211 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 253
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 36.2 bits (82), Expect = 0.065
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 404 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 446
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 211 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 253
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 35.8 bits (81), Expect = 0.085
Identities = 24/67 (35%), Positives = 28/67 (41%)
Query: 397 PYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATR 456
P PG R + R G+ G+G AG E RAR R S RG R R A R
Sbjct: 753 PAPGESRDRARGAGQPGPGSGSGAERAGPERRARDTQTRTRRDKLTDSARGGRARLTAGR 812
Query: 457 CGSPEAG 463
E+G
Sbjct: 813 RVRRESG 819
Score = 30.0 bits (66), Expect = 4.6
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 23/81 (28%)
Query: 402 RRPQGRRDGRGAGTRGAGRSAAG----DEARARGPAGRA-----PSPSAALSGRGD---- 448
RR GRR GA ++GA R AA E+R PA A PSP+AA S RG
Sbjct: 815 RRESGRRRA-GATSQGAIRRAASRARKGESRRPLPANSAGRPALPSPAAARSARGSWGLR 873
Query: 449 ---------RGRTGATRCGSP 460
RG RC +P
Sbjct: 874 ASRPSRAAPRGPPNFQRCPAP 894
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 35.8 bits (81), Expect = 0.085
Identities = 36/128 (28%), Positives = 44/128 (34%), Gaps = 25/128 (19%)
Query: 331 EAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRLVLQAGVTLTCPPW----------- 379
E V P P C++P + + WA R A V W
Sbjct: 713 EGCVGQPSHAYPVRCLLPSAHGSCAD-----WAARWYFVASVGQCNRFWYGGCHGNANNF 767
Query: 380 ASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAG----R 435
AS Q C M G RRPQ GR T G G S AG++ ++ G R
Sbjct: 768 ASEQEC-----MSSCQGSLHGPRRPQPGASGRSTHTDGGGSSPAGEQEPSQHRTGAAVQR 822
Query: 436 APSPSAAL 443
P PS L
Sbjct: 823 KPWPSGGL 830
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 35.0 bits (79), Expect = 0.14
Identities = 41/130 (31%), Positives = 49/130 (37%), Gaps = 25/130 (19%)
Query: 50 PCSEPPTSLCS----LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERS 105
P PP LCS LGSL KPG Q + +P L G +E
Sbjct: 2133 PTLSPP--LCSPNGYLGSL----KPGVQGKKVRKPSSKG------------LACGSKEAK 2174
Query: 106 PWEA---KSPRGPYAALRPQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPG 162
+A KS G L SP+ L G LSD PPL+ F+ V L
Sbjct: 2175 DLKARRKKSQDGKGCLLDSSGMLSPVDSLESPHGYLSDVASPPLLPSPFQQSPSVPLNHL 2234
Query: 163 PGPPEARAGI 172
PG P+ GI
Sbjct: 2235 PGMPDTHLGI 2244
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 35.0 bits (79), Expect = 0.14
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 400 GGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGS 459
G R P+G G AG R AGR AG R GR P A GRG R R C S
Sbjct: 75 GSRSPRGAGPG-AAGPRAAGRGGAGGGGRC-CTRGRGRFPCAGSGGRGARSR----GCHS 128
Query: 460 P 460
P
Sbjct: 129 P 129
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 35.0 bits (79), Expect = 0.14
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 400 GGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGS 459
G R P+G G AG R AGR AG R GR P A GRG R R C S
Sbjct: 75 GSRSPRGAGPG-AAGPRAAGRGGAGGGGRC-CTRGRGRFPCAGSGGRGARSR----GCHS 128
Query: 460 P 460
P
Sbjct: 129 P 129
>gi|239746532 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
Length = 345
Score = 35.0 bits (79), Expect = 0.14
Identities = 25/56 (44%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 410 GRGAGTRGAGRSAAGDEARARGPAGRAPS--PSAALSGRGDRGRTGATRCGSPEAG 463
GR G R A A G ARA GP G A P+A GR R GA CG P G
Sbjct: 4 GRAWGMRRAAAGAGG--ARAAGPTGGASRLHPNA---GRRSGARAGAQGCGGPRVG 54
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 35.0 bits (79), Expect = 0.14
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 400 GGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGS 459
G R P+G G AG R AGR AG R GR P A GRG R R C S
Sbjct: 75 GSRSPRGAGPG-AAGPRAAGRGGAGGGGRC-CTRGRGRFPCAGSGGRGARSR----GCHS 128
Query: 460 P 460
P
Sbjct: 129 P 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,533,430
Number of Sequences: 37866
Number of extensions: 1434580
Number of successful extensions: 7352
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 6760
Number of HSP's gapped (non-prelim): 774
length of query: 464
length of database: 18,247,518
effective HSP length: 106
effective length of query: 358
effective length of database: 14,233,722
effective search space: 5095672476
effective search space used: 5095672476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.