Search of human proteins with 239756899

Search of human proteins with 239756899

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
         (371 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]           764   0.0  
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]           764   0.0  
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]           762   0.0  
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi...    55   1e-07
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi...    55   1e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        54   2e-07
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ...    52   1e-06
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ...    52   1e-06
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ...    52   1e-06
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    51   2e-06
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            50   4e-06
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]            49   6e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             49   6e-06
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              49   7e-06
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]            49   9e-06
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]             48   1e-05
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]              48   1e-05
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s...    48   2e-05
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s...    48   2e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      47   2e-05
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           47   2e-05
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           47   2e-05
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]           47   2e-05
gi|50428940 mediator complex subunit 25 [Homo sapiens]                 47   2e-05
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         47   3e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    47   4e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              47   4e-05
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]            46   5e-05
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]            46   5e-05
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]       46   5e-05

>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 371

 Score =  764 bits (1973), Expect = 0.0
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
           MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR
Sbjct: 1   MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60

Query: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
           RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM
Sbjct: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120

Query: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
           GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180

Query: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
           TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA
Sbjct: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240

Query: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS 300
           AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS
Sbjct: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS 300

Query: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
           CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV
Sbjct: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360

Query: 361 ELGPFKRTLKP 371
           ELGPFKRTLKP
Sbjct: 361 ELGPFKRTLKP 371


>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 371

 Score =  764 bits (1973), Expect = 0.0
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
           MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR
Sbjct: 1   MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60

Query: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
           RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM
Sbjct: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120

Query: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
           GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180

Query: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
           TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA
Sbjct: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240

Query: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS 300
           AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS
Sbjct: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS 300

Query: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
           CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV
Sbjct: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360

Query: 361 ELGPFKRTLKP 371
           ELGPFKRTLKP
Sbjct: 361 ELGPFKRTLKP 371


>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 371

 Score =  762 bits (1968), Expect = 0.0
 Identities = 370/371 (99%), Positives = 370/371 (99%)

Query: 1   MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
           MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR
Sbjct: 1   MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60

Query: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
           RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM
Sbjct: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120

Query: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
           GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180

Query: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
           TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA
Sbjct: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240

Query: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS 300
           AGRSRHRVLLALSRESRHLSGARERGRAGRYS RRNLDSLPRKPSTGFAALSRRVNQAIS
Sbjct: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPSTGFAALSRRVNQAIS 300

Query: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
           CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV
Sbjct: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360

Query: 361 ELGPFKRTLKP 371
           ELGPFKRTLKP
Sbjct: 361 ELGPFKRTLKP 371


>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
           sapiens]
          Length = 681

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 75/242 (30%), Positives = 90/242 (37%), Gaps = 31/242 (12%)

Query: 12  RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLA-RRTELPGAAPAG-EPRRGDPGVAPS 69
           RPP P      PQ  +     RP S    PVP + RR   P   P      +  P   P 
Sbjct: 282 RPPQPRVCTFSPQRVSPTTSPRPAS----PVPGSERRGSRPEMTPVSLRSTKEGPETPPR 337

Query: 70  P-----PAPEDSDARGE-DGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLP 123
           P     P P      G+ D +A+  +  P      G R   TG   R    +R    G P
Sbjct: 338 PRDQLPPHPRSRRYSGDSDSSASSAQSGPL-----GTRSDDTGTGPRRERPSRRLTTGTP 392

Query: 124 DSARRPRAPRTPLRP--ERPAP-GVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
            S RRP A R+  R   +R  P G PGGR A  +     PSP  RR R   R   A L  
Sbjct: 393 ASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSV----PSP-ARRARSQSREEQAVLLV 447

Query: 181 TYQLLGYHRAPPRA-SPGGWNTETLNTEDAR-----RRARSATQAPPLALVPARSRARPA 234
                G H   PR    GG    T  T  AR     R +R ++ +P L   PA     P 
Sbjct: 448 RRDRDGQHSWVPRGRGSGGSGRSTPQTPRARSPAAPRLSRVSSPSPELGTTPASIFRTPL 507

Query: 235 HL 236
            L
Sbjct: 508 QL 509



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 44/157 (28%), Positives = 58/157 (36%), Gaps = 42/157 (26%)

Query: 63  DPGVAPSPPAPEDS------------------DARGEDGAAAERRPEPRTRDLSGARGQT 104
           DP  AP PPAP+ +                     G+ G  A   P PR++ LS +  + 
Sbjct: 546 DPARAPDPPAPDSAYCSSSSSSSSLSVLGGKCGQPGDSGRTANGLPGPRSQALSSSSDEG 605

Query: 105 TGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRV--APCTCTSGSPSP 162
           +   G  G                  AP +PL    P+     GR+   P    S  P+P
Sbjct: 606 SPCPGMGGPLD---------------APGSPLACTEPSRTWARGRMDTQPDRKPSRIPTP 650

Query: 163 RPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGW 199
           R  R R SG   PA+L   + L   H   PRA P  W
Sbjct: 651 RGPR-RPSG---PAELGTWHAL---HSVTPRAEPDSW 680


>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
           sapiens]
          Length = 681

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 75/242 (30%), Positives = 90/242 (37%), Gaps = 31/242 (12%)

Query: 12  RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLA-RRTELPGAAPAG-EPRRGDPGVAPS 69
           RPP P      PQ  +     RP S    PVP + RR   P   P      +  P   P 
Sbjct: 282 RPPQPRVCTFSPQRVSPTTSPRPAS----PVPGSERRGSRPEMTPVSLRSTKEGPETPPR 337

Query: 70  P-----PAPEDSDARGE-DGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLP 123
           P     P P      G+ D +A+  +  P      G R   TG   R    +R    G P
Sbjct: 338 PRDQLPPHPRSRRYSGDSDSSASSAQSGPL-----GTRSDDTGTGPRRERPSRRLTTGTP 392

Query: 124 DSARRPRAPRTPLRP--ERPAP-GVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
            S RRP A R+  R   +R  P G PGGR A  +     PSP  RR R   R   A L  
Sbjct: 393 ASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSV----PSP-ARRARSQSREEQAVLLV 447

Query: 181 TYQLLGYHRAPPRA-SPGGWNTETLNTEDAR-----RRARSATQAPPLALVPARSRARPA 234
                G H   PR    GG    T  T  AR     R +R ++ +P L   PA     P 
Sbjct: 448 RRDRDGQHSWVPRGRGSGGSGRSTPQTPRARSPAAPRLSRVSSPSPELGTTPASIFRTPL 507

Query: 235 HL 236
            L
Sbjct: 508 QL 509



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 44/157 (28%), Positives = 58/157 (36%), Gaps = 42/157 (26%)

Query: 63  DPGVAPSPPAPEDS------------------DARGEDGAAAERRPEPRTRDLSGARGQT 104
           DP  AP PPAP+ +                     G+ G  A   P PR++ LS +  + 
Sbjct: 546 DPARAPDPPAPDSAYCSSSSSSSSLSVLGGKCGQPGDSGRTANGLPGPRSQALSSSSDEG 605

Query: 105 TGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRV--APCTCTSGSPSP 162
           +   G  G                  AP +PL    P+     GR+   P    S  P+P
Sbjct: 606 SPCPGMGGPLD---------------APGSPLACTEPSRTWARGRMDTQPDRKPSRIPTP 650

Query: 163 RPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGW 199
           R  R R SG   PA+L   + L   H   PRA P  W
Sbjct: 651 RGPR-RPSG---PAELGTWHAL---HSVTPRAEPDSW 680


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 82/302 (27%), Positives = 118/302 (39%), Gaps = 43/302 (14%)

Query: 7    TPLSLRPPDPNS----VRTVPQPETRLDHNR-PMSRPIFPVPLARRTELPGAAPAGE--- 58
            TPL  R    +S    V+    P+ R + +  P S+     PL +R+   G++P  +   
Sbjct: 1531 TPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSR-SGSSPEVDSKS 1589

Query: 59   ---PRRGDPGVAP--------SPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGG 107
               PRR   G +P        +P A   SD+  E  A A R    R+R  S ++G+   G
Sbjct: 1590 RLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGR---G 1646

Query: 108  EGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP-GVPGGRVAPCTCTSGSPSPRPRR 166
               EG+ + E       S   P   RT  R  R +P      R  P   +S S     R+
Sbjct: 1647 PSPEGSSSTE------SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRK 1700

Query: 167  LRVSGRGSPAQLPPTYQLLGYHRAPP--RASPGGWNTETLNTEDARRRARSATQAPPLAL 224
             R+S R   A   P  +     R PP  R SP   + E      + RR RSA+ +P    
Sbjct: 1701 ARLSRRSRSASSSPETR----SRTPPRHRRSPSVSSPEPAEKSRSSRRRRSAS-SPRTKT 1755

Query: 225  VPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKP 284
               R R+     R     RSR R      RE    +  R+R  + + ++RR   S  R  
Sbjct: 1756 TSRRGRSPSPKPRGLQRSRSRSR------REKTRTTRRRDRSGSSQSTSRRRQRSRSRSR 1809

Query: 285  ST 286
             T
Sbjct: 1810 VT 1811



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 87/305 (28%), Positives = 119/305 (39%), Gaps = 57/305 (18%)

Query: 5    PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVP-------LARRTELPGAAPAG 57
            PE P   R     S R+ P+P+T+     P  R     P       L+RR+    ++P  
Sbjct: 1659 PEHPPKSRTARRGS-RSSPEPKTK-SRTPPRRRSSRSSPELTRKARLSRRSRSASSSPET 1716

Query: 58   EPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTRE 117
              R        +PP    S +      A + R   R R  S  R +TT   GR  +    
Sbjct: 1717 RSR--------TPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPR 1768

Query: 118  GKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQ 177
            G       +RR +  RT  R +R               +S S S R +R R   R +  +
Sbjct: 1769 GLQRSRSRSRREKT-RTTRRRDRSG-------------SSQSTSRRRQRSRSRSRVTRRR 1814

Query: 178  LPPTYQLLGYH-RAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHL 236
               +    GYH R+P R        E+  T   RRR RS T  PP +   +RSR  PA  
Sbjct: 1815 RGGS----GYHSRSPAR-------QESSRTSSRRRRGRSRT--PPTSRKRSRSRTSPAPW 1861

Query: 237  RVRAAGRSRHRVLLALSRESRH----LSGARERGRAGRYSTRRNLD--SLPRKPSTGFAA 290
            +     RSR R   A  R SR     +S  R R R    S RR+    S+ R+ S   A+
Sbjct: 1862 K-----RSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRAS 1916

Query: 291  -LSRR 294
             +SRR
Sbjct: 1917 PVSRR 1921



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 77/304 (25%), Positives = 116/304 (38%), Gaps = 32/304 (10%)

Query: 7   TPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGV 66
           TPLS  P +P S              R  S P  P  L + +    + P+ +P +     
Sbjct: 384 TPLSQEPVNPPS---------EASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHA 434

Query: 67  APSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSA 126
           + SP +P+ + A    G+  E    P +++ S  R +         ++ R G+   P +A
Sbjct: 435 SSSPESPKPAPA---PGSHREISSSPTSKNRSHGRAKRDKSHSHTPSR-RMGRSRSPATA 490

Query: 127 RRPRA-PRTPLR---PERPAPGVPGGRVAPCTCTSGSP-------SP------RPRRLRV 169
           +R R+  RTP +       +P     R A     S SP       SP      R R  + 
Sbjct: 491 KRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQR 550

Query: 170 SGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARS 229
            GR   A+   ++      R   R+        + +   ARRR+RS T  P      +R+
Sbjct: 551 RGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT--PTRRRSRSRT 608

Query: 230 RARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFA 289
            AR    R R   R R R    + R SR  S AR  GR+   +  R   S  R P+    
Sbjct: 609 PARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGR 668

Query: 290 ALSR 293
           + SR
Sbjct: 669 SRSR 672



 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 63/217 (29%), Positives = 79/217 (36%), Gaps = 21/217 (9%)

Query: 65  GVAPSPPAPEDSDARGEDGAAAERRPEPRT--RDLSGARGQTTGGEGREGAQTREGKMGL 122
           G + SP  P  S +R       +RR   R+  R  S +R   T G  R     R G+   
Sbjct: 532 GRSRSPQRPGWSRSRN-----TQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRS 586

Query: 123 PDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSG---RGSPAQLP 179
              ARR    RTP R  R     P  R       S S +P  RR R      R S ++ P
Sbjct: 587 RTPARRRSRSRTPTR-RRSRSRTPARRGR-----SRSRTPARRRSRTRSPVRRRSRSRSP 640

Query: 180 PTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVR 239
                    R P R            T   R R+RS T A       +R+ AR    R R
Sbjct: 641 ARRSGRSRSRTPARRG-----RSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSR 695

Query: 240 AAGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRN 276
              R R R    + R   H    + RGR+G  S R+N
Sbjct: 696 TPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKN 732



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 70/269 (26%), Positives = 95/269 (35%), Gaps = 32/269 (11%)

Query: 31   HNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDA--------RGED 82
            H+R  +R       +RR       P    +R     +P+P     S A        R   
Sbjct: 1821 HSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRT 1880

Query: 83   GAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPA 142
               + RR   RT  +S  R ++     R  +++R      P S RR R+   P+   R  
Sbjct: 1881 PLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRAS----PVSRRRSRSRTPPVTRRRSR 1936

Query: 143  PGVPG------GRVAPCTCT-SGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRAS 195
               P        R  P T   S S +P   R R   R SP         +   R+  R S
Sbjct: 1937 SRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSP---------ITRRRSRSRTS 1987

Query: 196  PGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRAAGRSRHRVLLALSRE 255
            P         T    RR RS ++  P+    +RSR  PA   +R   RSR  +L      
Sbjct: 1988 PVTRRRSRSRTSPVTRR-RSRSRTSPVTRRRSRSRTPPA---IRRRSRSRTPLLPRKRSR 2043

Query: 256  SRHLSGARERGRAGRYSTRRNLDSLPRKP 284
            SR     R R R+    T R   SL R P
Sbjct: 2044 SRSPLAIRRRSRSRTPRTARGKRSLTRSP 2072



 Score = 37.4 bits (85), Expect = 0.022
 Identities = 75/313 (23%), Positives = 108/313 (34%), Gaps = 64/313 (20%)

Query: 47  RTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG 106
           + E     P+  P R   G  P PPAP    A    G+       P +++      + + 
Sbjct: 342 KKEKSATRPSPSPERSSTG--PEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASP 399

Query: 107 GEGREGAQTREGKMGLPDSARRPRAPRTP----------LRPERPAPG-VPG-------- 147
              R   ++ E    LP S+    +P +P            PE P P   PG        
Sbjct: 400 TRDRSPPKSPE---KLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSS 456

Query: 148 --------GRVAPCTCTSGSPSPRPRRLR---VSGRGSPAQLPPT--------------- 181
                   GR       S +PS R  R R    + RG      PT               
Sbjct: 457 PTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRS 516

Query: 182 --YQLLGYHRAPPR----ASP--GGW----NTETLNTEDARRRARSATQAPPL-ALVPAR 228
              Q  G  R+P R     SP   GW    NT+      + RR RS +++P       +R
Sbjct: 517 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR 576

Query: 229 SRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARE-RGRAGRYSTRRNLDSLPRKPSTG 287
           + AR    R R   R R R      R SR  + AR  R R+   + RR+    P +  + 
Sbjct: 577 TPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSR 636

Query: 288 FAALSRRVNQAIS 300
             + +RR  ++ S
Sbjct: 637 SRSPARRSGRSRS 649



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 50/217 (23%), Positives = 74/217 (34%), Gaps = 24/217 (11%)

Query: 7   TPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGV 66
           +P+  R    +  R   +  +R    R  SR   P    R      A  +G  R   P  
Sbjct: 629 SPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPA- 687

Query: 67  APSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSA 126
                       RG   +   RR   R+R L         G        R G+ G   S+
Sbjct: 688 -----------RRGRSRSRTPRRGRSRSRSL------VRRGRSHSRTPQRRGRSG--SSS 728

Query: 127 RRPRAPRTPLRPERP--APGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQL 184
            R    RT  R  R   +P +   R++     S S      + R+S R S +   P  + 
Sbjct: 729 ERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQ 788

Query: 185 LGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPP 221
               + PPR S  G +     +    RR+RS++  PP
Sbjct: 789 KS--QTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPP 823



 Score = 32.0 bits (71), Expect = 0.92
 Identities = 69/263 (26%), Positives = 88/263 (33%), Gaps = 41/263 (15%)

Query: 5    PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP 64
            P T    R   P ++R   +  T L    P  R     PLA R       P     RG  
Sbjct: 2012 PVTRRRSRSRTPPAIRRRSRSRTPL---LPRKRSRSRSPLAIRRRSRSRTP--RTARGKR 2066

Query: 65   GVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG-GEGREGAQTREGKMGLP 123
             +  SPPA     A G     +     P TR+ SG+R         R    +R      P
Sbjct: 2067 SLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTP 2126

Query: 124  -DSARRP------RAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPR-PRRLRVSGRGSP 175
             D  R P       + RTP+   + A G               P PR P   R S   + 
Sbjct: 2127 LDRCRSPGMLEPLGSSRTPMSVLQQAGG----------SMMDGPGPRIPDHQRTSVPENH 2176

Query: 176  AQ----LPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRA 231
            AQ    L  T   LG  R PP  S  G              AR +    P+ L+  R+ A
Sbjct: 2177 AQSRIALALTAISLGTARPPPSMSAAG------------LAARMSQVPAPVPLMSLRT-A 2223

Query: 232  RPAHLRVRAAGRSRHRVLLALSR 254
              A+L  R    S   + LA +R
Sbjct: 2224 PAANLASRIPAASAAAMNLASAR 2246



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 54/191 (28%), Positives = 74/191 (38%), Gaps = 29/191 (15%)

Query: 89   RPEPRTRDLSGARGQTTGGEGREGA----QTREGKMGLPDSARRPRAPRTPLRPERPAPG 144
            R  P TR  S +R  TT    R       + R      P + RR R+  +P+   R    
Sbjct: 1926 RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSR-- 1983

Query: 145  VPGGRVAPCTCTSGSPSPRP---RRLR-----VSGRGSPAQLPPTYQLLGYHRAP--PRA 194
                R +P T         P   RR R     V+ R S ++ PP  +     R P  PR 
Sbjct: 1984 ---SRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRK 2040

Query: 195  SPGGWNTETLNTEDARRRARSATQAPPLALVPARS--RARPAHLRVRAAGRSRHRVLLAL 252
                  + + +    RRR+RS T   P      RS  R+ PA  R  A+G S  R   A 
Sbjct: 2041 -----RSRSRSPLAIRRRSRSRT---PRTARGKRSLTRSPPAIRRRSASGSSSDRSRSAT 2092

Query: 253  SRESRHLSGAR 263
               +R+ SG+R
Sbjct: 2093 PPATRNHSGSR 2103



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 36   SRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTR 95
            S P+ P    +R   P  AP    R G     P  P P     R    +++       + 
Sbjct: 2567 SLPVQPEVALKRVPSPTPAPKEAVREG----RPPEPTPAKRKRRSSSSSSSSSSSSSSSS 2622

Query: 96   DLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPG 144
              S +   ++       + +         +   P+A   P  P++P PG
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPG 2671



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 11/158 (6%)

Query: 68   PSP-PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSA 126
            PSP PAP+++   G         P P  R    +   ++       + +         S+
Sbjct: 2580 PSPTPAPKEAVREGRPP-----EPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2634

Query: 127  RRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLG 186
                +  +      P+P  PG +  P   +   P P  RR R   +  P       + L 
Sbjct: 2635 SSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRK--PIDSLRDSRSLS 2692

Query: 187  Y---HRAPPRASPGGWNTETLNTEDARRRARSATQAPP 221
            Y    R  P   P   + ++ ++E   RR +      P
Sbjct: 2693 YSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSP 2730


>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
           sapiens]
          Length = 355

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 81/282 (28%), Positives = 100/282 (35%), Gaps = 33/282 (11%)

Query: 12  RPPDPNSVRTVPQPETRLDHN-RPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSP 70
           R P P    T PQP         P S P  P+P     +   +AP G       G   S 
Sbjct: 73  RGPSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSR 132

Query: 71  PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
                   +     ++ R P PR   L   R   + G G  G ++R  + GL   + R R
Sbjct: 133 AG--GGLTKYNSAHSSSRVPRPR---LPSQRRGASCGLG-PGPESRAARQGLGGRSARAR 186

Query: 131 APRTPLRPERPAPGV--PGGRVAPCTCTSGSPSPRPR-RLRVSGRGSPAQLPPTYQLLGY 187
             R P R  RP PG    G R A        P P  R R R +G GS A+ P  +   G 
Sbjct: 187 TRRGPHRTRRPEPGPHHTGARQA-------GPLPGTRGRTRAAGTGSAARGPARHLRGGS 239

Query: 188 HRAPPRA-----SPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP-AHLRVRAA 241
             A   A     SP G               RS+   PPL   PAR    P A  R R  
Sbjct: 240 VAAAAAARCLGLSPPG--------RSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVN 291

Query: 242 -GRSRHRVLLALSRESRHL-SGARERGRAGRYSTRRNLDSLP 281
             +S         R +RH+ S  R  G   R + R  LD  P
Sbjct: 292 WNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGP 333


>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
           sapiens]
          Length = 355

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 81/282 (28%), Positives = 100/282 (35%), Gaps = 33/282 (11%)

Query: 12  RPPDPNSVRTVPQPETRLDHN-RPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSP 70
           R P P    T PQP         P S P  P+P     +   +AP G       G   S 
Sbjct: 73  RGPSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSR 132

Query: 71  PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
                   +     ++ R P PR   L   R   + G G  G ++R  + GL   + R R
Sbjct: 133 AG--GGLTKYNSAHSSSRVPRPR---LPSQRRGASCGLG-PGPESRAARQGLGGRSARAR 186

Query: 131 APRTPLRPERPAPGV--PGGRVAPCTCTSGSPSPRPR-RLRVSGRGSPAQLPPTYQLLGY 187
             R P R  RP PG    G R A        P P  R R R +G GS A+ P  +   G 
Sbjct: 187 TRRGPHRTRRPEPGPHHTGARQA-------GPLPGTRGRTRAAGTGSAARGPARHLRGGS 239

Query: 188 HRAPPRA-----SPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP-AHLRVRAA 241
             A   A     SP G               RS+   PPL   PAR    P A  R R  
Sbjct: 240 VAAAAAARCLGLSPPG--------RSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVN 291

Query: 242 -GRSRHRVLLALSRESRHL-SGARERGRAGRYSTRRNLDSLP 281
             +S         R +RH+ S  R  G   R + R  LD  P
Sbjct: 292 WNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGP 333


>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
           sapiens]
          Length = 355

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 81/282 (28%), Positives = 100/282 (35%), Gaps = 33/282 (11%)

Query: 12  RPPDPNSVRTVPQPETRLDHN-RPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSP 70
           R P P    T PQP         P S P  P+P     +   +AP G       G   S 
Sbjct: 73  RGPSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSR 132

Query: 71  PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
                   +     ++ R P PR   L   R   + G G  G ++R  + GL   + R R
Sbjct: 133 AG--GGLTKYNSAHSSSRVPRPR---LPSQRRGASCGLG-PGPESRAARQGLGGRSARAR 186

Query: 131 APRTPLRPERPAPGV--PGGRVAPCTCTSGSPSPRPR-RLRVSGRGSPAQLPPTYQLLGY 187
             R P R  RP PG    G R A        P P  R R R +G GS A+ P  +   G 
Sbjct: 187 TRRGPHRTRRPEPGPHHTGARQA-------GPLPGTRGRTRAAGTGSAARGPARHLRGGS 239

Query: 188 HRAPPRA-----SPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP-AHLRVRAA 241
             A   A     SP G               RS+   PPL   PAR    P A  R R  
Sbjct: 240 VAAAAAARCLGLSPPG--------RSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVN 291

Query: 242 -GRSRHRVLLALSRESRHL-SGARERGRAGRYSTRRNLDSLP 281
             +S         R +RH+ S  R  G   R + R  LD  P
Sbjct: 292 WNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGP 333


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 62/231 (26%), Positives = 79/231 (34%), Gaps = 25/231 (10%)

Query: 2   QIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPG--------- 52
           Q PP+ P   +PP P+     PQP  +     P      PV        PG         
Sbjct: 71  QPPPQQPPPQQPP-PHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASS 129

Query: 53  -AAPAGEPRRG-DPGVAPSP-PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEG 109
            A PA  P  G  PG  P P P P  +      GA     P P +  +     Q  G   
Sbjct: 130 SAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPP---PTPPSSGVPTTPPQAGGPPP 186

Query: 110 REGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRV 169
              A    G    P     P  P+    P  P PG   G   P     G P P P R   
Sbjct: 187 PPAAVPGPGPG--PKQGPGPGGPKGGKMPGGPKPGGGPGLSTP----GGHPKP-PHRGGG 239

Query: 170 SGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAP 220
             RG     PP +Q   +H+ PP   PGG + E ++  +  +   S  + P
Sbjct: 240 EPRGGRQHHPPYHQQ--HHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP 288


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 74/260 (28%), Positives = 89/260 (34%), Gaps = 19/260 (7%)

Query: 34  PMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPR 93
           P SR +  VPL  R   PG AP     RG  G  P P       + G+  AAA R   PR
Sbjct: 80  PGSRRLGRVPLTFREASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPR 139

Query: 94  TRDLSGARGQTTGGEGREGA----QTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGR 149
            R L+    ++ G   R         R  +       RR   P+ P    R     P   
Sbjct: 140 QRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASPPRL 199

Query: 150 VAPCT-CTSGSPSPRPRRLRVSGRGSPA--QLP-PTYQLLGYHRAPPRASPGGWNTETLN 205
            AP     + S SP PRR R     SPA   LP P     G      R   GG       
Sbjct: 200 AAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRG 259

Query: 206 TEDARRRARSATQAPPLALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARER 265
                RR   A  +PP+   PA +  R    R     R R        RE     GA+  
Sbjct: 260 -----RRQGCALGSPPIPAGPA-APGRAGERRAARQWRKRGGGPGVSPRE-----GAQGE 308

Query: 266 GRAGRYSTRRNLDSLPRKPS 285
           G  G  + R    S   +PS
Sbjct: 309 GVRGGVTPRARGSSTCLRPS 328



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 72/236 (30%), Positives = 83/236 (35%), Gaps = 43/236 (18%)

Query: 59  PRRGDPGVAPSPPAPEDSDARGEDGAA-----------AERRPEPRTRDLSGARGQTTGG 107
           PR   PG     P PE +DA G    +           A +RP  R R+  GA     G 
Sbjct: 11  PRTPAPGCPEVAPQPEGTDAPGPAVCSPTARAPPPILPAPQRPPTRAREWEGA-AWAAGA 69

Query: 108 EGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRL 167
            G   A      + LP S R  R P T  R   P P  PG   A  +C    P PR RR 
Sbjct: 70  TGVGAA-----LLALPGSRRLGRVPLT-FREASPGP-APGAPRARGSC-GREPGPRRRRA 121

Query: 168 RVSGRGSPA----QLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARR----------RA 213
             S    PA      PP  + L   R  PR S G     ++     RR          R 
Sbjct: 122 PSSAGKRPAAAARAAPPRQRSLA--RCLPR-SVGSCVRPSVGPSLPRRHCRRHCRCHCRR 178

Query: 214 RSATQAPPLALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAG 269
           R   + PPL   P    A P  L    AG SR   L    R  R  +   ER  AG
Sbjct: 179 RPLPKPPPLQ--PRLGSASPPRLAAPLAG-SRAPSLSPFPRRCRRRA---ERSPAG 228


>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 175

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 51/164 (31%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 22  VPQPETRLDHNRPMSRPIFPVPLARRTEL---PGAAPAGEPRRGDP--GVAPSPPAPEDS 76
           +P   +     R   RP   V LARR  L   PG      PR   P  G  P    P   
Sbjct: 1   MPNKASGRRQGRARGRPHSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPP 60

Query: 77  DARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPL 136
            AR   G+   R P P      G RG  T   GR+ A   EG        +R  A R P 
Sbjct: 61  AARTHPGSCRARCPSPAA---GGLRGPWTAAPGRQRAD--EGAAAARPERQRVWARRLPG 115

Query: 137 RPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
               PAPG    R+ P       P  RPR       G PA   P
Sbjct: 116 SAAAPAPGRDALRLPP---PPPPPPERPRLPPAGLAGGPADSAP 156



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 40/138 (28%), Positives = 42/138 (30%), Gaps = 36/138 (26%)

Query: 128 RPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSP------------------------- 162
           RP  PR    P    P  P  R  P +C +  PSP                         
Sbjct: 42  RPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAAAA 101

Query: 163 RPRRLRVSGR---GSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQA 219
           RP R RV  R   GS A   P    L   R PP   P     E      A      A  A
Sbjct: 102 RPERQRVWARRLPGSAAAPAPGRDAL---RLPPPPPP---PPERPRLPPAGLAGGPADSA 155

Query: 220 PPLALVPARSR--ARPAH 235
           PP      RSR   RP H
Sbjct: 156 PPSPAPAPRSRPAPRPGH 173


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 77/267 (28%), Positives = 101/267 (37%), Gaps = 53/267 (19%)

Query: 62  GDPGVAPSPP-APEDSDARGEDGAAA---------ERRPEPRTRDLS-GARGQTTGGEGR 110
           G PG A SPP  P     R  D AAA         +  P PR+   S G  G+  GG GR
Sbjct: 326 GRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGR 385

Query: 111 EGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRV---APCTCTSGS------PS 161
              + R  +     SA  PR  R   R  RPAP     R    A  +  SGS      P 
Sbjct: 386 RRRRRRRRRRS-RSSASAPR--RRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPG 442

Query: 162 PRPRRLRVSG-----------RGSPAQLPPTYQLLGYHRAP--------PRASPGGWNTE 202
           P P   R  G           R  PA   P+    G    P        P   P  W++ 
Sbjct: 443 PEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSS- 501

Query: 203 TLNTEDARRRARSATQAPPLALVPARSRA--RPAHLRVRAAGRSRHRVLLA--LSRESRH 258
             +   ++ R+RSA + P     P+RS +  +P        GR+RH    A    R SR 
Sbjct: 502 --SRSPSKSRSRSAEKRPH---SPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRS 556

Query: 259 LSGARERGR-AGRYSTRRNLDSLPRKP 284
            S  R+R R +  +   R + S  ++P
Sbjct: 557 YSPIRKRRRDSPSFMEPRRITSARKRP 583



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 71/264 (26%), Positives = 92/264 (34%), Gaps = 41/264 (15%)

Query: 16  PNSVRTVP-QPETRLDHNRPMSRPIFPVPLARRTELPG--AAPAGEPRRGDP-GVAPSPP 71
           P S  + P +P +     R  +    P P AR  E P   +AP+ + R G   G A    
Sbjct: 328 PGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRR 387

Query: 72  APEDSDARGEDGAAAERR----------PEPRTRDLSGARGQTTGGEGR--------EGA 113
                  R    A+A RR          P   +R LS AR  +  G GR         G+
Sbjct: 388 RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS 447

Query: 114 QTREGKMGLPDSARRPRAPRTPLRP--ERPAPGVPGGRVAP-CTCTSGSPSPRPR----- 165
           +   G  G     R PRA     RP    P+PG  G R  P    +S SP P PR     
Sbjct: 448 ERGHGGHGKRAKERPPRA-----RPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSS 502

Query: 166 RLRVSGRGSPAQLPPTYQLLGYHRAPP--RASPGGWNTETLNTEDARRRARSATQAPPLA 223
           R     R   A+  P           P  R   G         E  R R RS + +P   
Sbjct: 503 RSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSP--- 559

Query: 224 LVPARSRARPAHLRVRAAGRSRHR 247
            +  R R  P+ +  R    +R R
Sbjct: 560 -IRKRRRDSPSFMEPRRITSARKR 582



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 63/230 (27%), Positives = 80/230 (34%), Gaps = 47/230 (20%)

Query: 28  RLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPED-SDARGEDGAAA 86
           R + N+   RP         TE PG        R   G + SP      SD+R     + 
Sbjct: 233 RKEKNKEKKRP--------HTESPGR----RSHRHSSGSSHSPSLSSHYSDSRSPSRLSP 280

Query: 87  ERRPEPR---TRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPR---APRTPLRPER 140
           + R E R   ++  SG+R  +  G    G+  R G  G    A   R   A   P +P  
Sbjct: 281 KHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSS 340

Query: 141 PAPGV--PGGRVAPCTCTSGSPSPRPRRLRVS-GRGSPAQLPPTYQLLGYHRAPPRASPG 197
           P+P V       AP     G  SP PR    S GRG                   RA+ G
Sbjct: 341 PSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG------------------RAAGG 382

Query: 198 GWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRAAGRSRHR 247
                       RRR+RS+  AP       R R RP     R + RS  R
Sbjct: 383 AGRRR--RRRRRRRRSRSSASAP-----RRRGRRRPRPAPPRGSSRSLSR 425


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 70/251 (27%), Positives = 92/251 (36%), Gaps = 42/251 (16%)

Query: 13  PPDPNSVRTVPQ--PETRLDHNRPMSRPIF---PVPLARRTELPGAAP-----AGEPRRG 62
           PP P +  T  Q  P    D + P S P     P P  ++ E+   AP     A EP + 
Sbjct: 707 PPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQD 766

Query: 63  DPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGL 122
                P PPAPE+ D    D       P P     S A  +  G  G     +       
Sbjct: 767 PNWPPPPPPAPEEQDLSMAD------FPPPEEAFFSVASPEPAGPSGSPELVSSPAASSS 820

Query: 123 PDSA---RRPRAPRTPLRPERPAPGVPG-GRVA------PCTCTSGSPSPRPRRLRVSGR 172
             +A   + P +P  P  P  PAP     G VA      P  C+ G   PR         
Sbjct: 821 SATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGPPR------EDV 874

Query: 173 GSPAQLPPTYQLLGYHRAPPRASPGGWNTETLN---TEDARRRARSATQAPPLALVPARS 229
           G+P   P   Q++   R     +PGG  T  L     +   RRA S   +P    VPA S
Sbjct: 875 GAPLVTPSLLQMV---RLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASP----VPAPS 927

Query: 230 RARPAHLRVRA 240
               A +R++A
Sbjct: 928 SGLHAAVRLKA 938



 Score = 37.0 bits (84), Expect = 0.028
 Identities = 49/197 (24%), Positives = 72/197 (36%), Gaps = 19/197 (9%)

Query: 9   LSLRPPDPNSVRTVPQPETRLD--HNRPMSRPIFPVPLARRTE------LPGAAPAGEPR 60
           LS R      ++  P P  R    H R ++ P  P+ L  + E      LP     G   
Sbjct: 484 LSGRSVSLRKLKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSE 543

Query: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQT--REG 118
               G AP PP P +S   G     + R P    R LS + G ++    + G  T   +G
Sbjct: 544 GA--GAAPCPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSS----QSGTPTLPPKG 597

Query: 119 KMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGS---PSPRPRRLRVSGRGSP 175
             G P S  + + P+        +PG          C+S S   PS R     ++  G  
Sbjct: 598 LAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLGDR 657

Query: 176 AQLPPTYQLLGYHRAPP 192
             +PP  ++      PP
Sbjct: 658 FVIPPHPKVPAPFSPPP 674


>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 264

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 58/200 (29%), Positives = 79/200 (39%), Gaps = 20/200 (10%)

Query: 64  PGVAPSPPAPEDSDARGEDGAAAERR-PEPRTR------DLSGAR-GQTTGGEGREGAQT 115
           P V   P + E +DA    GA A+   P PR R       L  AR  +  GG GRE    
Sbjct: 5   PAVGSYPWSAEPTDAEKRGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNA 64

Query: 116 REGKMGLPDSARRPRAPRTPLRPERPAPGVPG------GRVAPCTCTSGSP-SPRPRRLR 168
           +  ++ L     R  AP  P    R  P   G      G VA C  + G P SP  R+ R
Sbjct: 65  QGPRLAL---QARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR 121

Query: 169 VSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPAR 228
            + R     L       G+   PP+A+   W   +++       A SA    P    PAR
Sbjct: 122 PAARAPEGALASCGLRAGWAGWPPQAAWRAWGA-SVDAAAPPSEAASAEARLPERSGPAR 180

Query: 229 SRARPAHLRVRAAGRSRHRV 248
            R  P  + ++A G ++  V
Sbjct: 181 -RPGPECVPMKAPGLAQAAV 199



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 46/170 (27%), Positives = 57/170 (33%), Gaps = 31/170 (18%)

Query: 53  AAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEG--R 110
           A P    +RG      +PPAP     R   G         R    +G RG+ TG     R
Sbjct: 14  AEPTDAEKRGGARAKATPPAP-----RPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPR 68

Query: 111 EGAQTREGKMGLPDSARR----PRAPRT-------------------PLRPERPAPGVPG 147
              Q R      P ++RR    PR  R                    PLR  RPA   P 
Sbjct: 69  LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPE 128

Query: 148 GRVAPCTCTSG-SPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASP 196
           G +A C   +G +  P     R  G    A  PP+       R P R+ P
Sbjct: 129 GALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGP 178


>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
          Length = 694

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 64/227 (28%), Positives = 79/227 (34%), Gaps = 24/227 (10%)

Query: 16  PNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPA---GEPRRGDPGVAPSPPA 72
           P  V   P P  +    +P+S P  P   A   + P  APA    E RRG PG   + P 
Sbjct: 162 PKQVLPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRG-PG-QKTGPD 219

Query: 73  PEDSDARGEDGAAAERRPEPRTRDLS--GARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
           P  +  RG  G    R  E R    S        +GG G         +      A RP 
Sbjct: 220 PASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRP- 278

Query: 131 APRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRA 190
           AP +   P  P PG PG      T     P P P     +GR  P Q P          A
Sbjct: 279 APGSVQSPAPPQPGQPG------TPGGSRPGPGP-----AGR-FPDQKPEVAPSDPGTTA 326

Query: 191 PPR----ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
           PPR       GG+       +     +   +QA   A  PA +R  P
Sbjct: 327 PPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPAAARQPP 373


>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
          Length = 690

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 64/227 (28%), Positives = 79/227 (34%), Gaps = 24/227 (10%)

Query: 16  PNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPA---GEPRRGDPGVAPSPPA 72
           P  V   P P  +    +P+S P  P   A   + P  APA    E RRG PG   + P 
Sbjct: 158 PKQVLPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRG-PG-QKTGPD 215

Query: 73  PEDSDARGEDGAAAERRPEPRTRDLS--GARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
           P  +  RG  G    R  E R    S        +GG G         +      A RP 
Sbjct: 216 PASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRP- 274

Query: 131 APRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRA 190
           AP +   P  P PG PG      T     P P P     +GR  P Q P          A
Sbjct: 275 APGSVQSPAPPQPGQPG------TPGGSRPGPGP-----AGR-FPDQKPEVAPSDPGTTA 322

Query: 191 PPR----ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
           PPR       GG+       +     +   +QA   A  PA +R  P
Sbjct: 323 PPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPAAARQPP 369


>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
           sapiens]
          Length = 921

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 50  LPGAAPAGEP-RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGE 108
           LPG  P G P  +GD GV   P    +  A GE+G A E R E     L G +G + G  
Sbjct: 653 LPG--PPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGE-RGELGDIGLPGPKG-SAGNP 708

Query: 109 GREGAQTREGKMGLPDSARRPRAPRTP--LRPERPAPGVPGGRVAP 152
           G  G +  EG  GLP     PR P  P  ++ E+ A G+PG +  P
Sbjct: 709 GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGPP 753



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 19/133 (14%)

Query: 62  GDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARG-----QTTGGEGREGAQTR 116
           G+PG    P AP D   RG  G A  +      R   GARG        G  G  G   R
Sbjct: 490 GEPGPQGLPGAPGDQGQRGPPGEAGPK----GDRGAEGARGIPGLPGPKGDTGLPGVDGR 545

Query: 117 EGKMGLPDSARRPRAPRTP----LRPERPAPGVPGGR-VAPCTCTSGSPSPRPRRLRVSG 171
           +G  G+P +   P  P  P    L+     PG+PG + VA    ++G+P  +P ++  SG
Sbjct: 546 DGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPG-KPGQMGNSG 604

Query: 172 R----GSPAQLPP 180
           +    G P ++ P
Sbjct: 605 KPGQQGPPGEVGP 617



 Score = 37.7 bits (86), Expect = 0.017
 Identities = 42/154 (27%), Positives = 48/154 (31%), Gaps = 34/154 (22%)

Query: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRP-----------EPRTRDLSGARGQTTGGEG 109
           RG PG    P  P      G DG   +R P           EP      G  G T G +G
Sbjct: 268 RGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPG-TPGADG 326

Query: 110 REGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPG-----------GRVAPCTCTSG 158
             G     G +G       P  P +   P R  PG PG           GRV P     G
Sbjct: 327 LTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPV----G 382

Query: 159 SPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPP 192
            P  R       G   P   P     +G+H   P
Sbjct: 383 DPGRR-------GPPGPPGPPGPRGTIGFHDGDP 409



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 55  PAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAE-----RRPEPRTRDLSGARGQTTGGEG 109
           PAGEP  G PG    P  P      G DG+        ++ EP    + G+RG    G G
Sbjct: 306 PAGEP--GKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEP---GVPGSRG--FPGRG 358

Query: 110 REGAQTREGKMGLPDSARRPRAPRTPLRPERPA-PGVPGGR 149
             G     G  GLP    R      P R   P  PG PG R
Sbjct: 359 IPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPR 399



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 49  ELPGAAPAGEP-RRGDPGVAPSPPAP------EDSDARGEDGAAAERRPEPRTRDLSGAR 101
           EL    P G+P RRG PG  P PP P       D D    +     R   P    + G +
Sbjct: 374 ELGRVGPVGDPGRRGPPG-PPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHK 432

Query: 102 GQ--TTGGEGREGAQTREGKMG 121
           G     G  GR+G +  EG  G
Sbjct: 433 GAKGEIGEPGRQGHKGEEGDQG 454



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPR-TRDLSGARG-------QTTGGEGREG 112
           RG PG+   P A      +G+ G   ER P  R    L GA G        + G  GR+G
Sbjct: 816 RGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDG 875

Query: 113 AQTREGKMGLPDSARRPRAPRTP 135
            +   G  G+P     P  P  P
Sbjct: 876 ERGPPGVAGIPGVPGPPGPPGLP 898


>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
           sapiens]
          Length = 678

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 50  LPGAAPAGEP-RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGE 108
           LPG  P G P  +GD GV   P    +  A GE+G A E R E     L G +G + G  
Sbjct: 410 LPG--PPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGE-RGELGDIGLPGPKG-SAGNP 465

Query: 109 GREGAQTREGKMGLPDSARRPRAPRTP--LRPERPAPGVPGGRVAP 152
           G  G +  EG  GLP     PR P  P  ++ E+ A G+PG +  P
Sbjct: 466 GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGPP 510



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 19/133 (14%)

Query: 62  GDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARG-----QTTGGEGREGAQTR 116
           G+PG    P AP D   RG  G A  +      R   GARG        G  G  G   R
Sbjct: 247 GEPGPQGLPGAPGDQGQRGPPGEAGPK----GDRGAEGARGIPGLPGPKGDTGLPGVDGR 302

Query: 117 EGKMGLPDSARRPRAPRTP----LRPERPAPGVPGGR-VAPCTCTSGSPSPRPRRLRVSG 171
           +G  G+P +   P  P  P    L+     PG+PG + VA    ++G+P  +P ++  SG
Sbjct: 303 DGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPG-KPGQMGNSG 361

Query: 172 R----GSPAQLPP 180
           +    G P ++ P
Sbjct: 362 KPGQQGPPGEVGP 374



 Score = 38.1 bits (87), Expect = 0.013
 Identities = 42/155 (27%), Positives = 49/155 (31%), Gaps = 34/155 (21%)

Query: 60  RRGDPGVAPSPPAPEDSDARGEDGAAAERRP-----------EPRTRDLSGARGQTTGGE 108
           +RG PG    P  P      G DG   +R P           EP      G  G T G +
Sbjct: 24  QRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPG-TPGAD 82

Query: 109 GREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPG-----------GRVAPCTCTS 157
           G  G     G +G       P  P +   P R  PG PG           GRV P     
Sbjct: 83  GLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPV---- 138

Query: 158 GSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPP 192
           G P  R       G   P   P     +G+H   P
Sbjct: 139 GDPGRR-------GPPGPPGPPGPRGTIGFHDGDP 166



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 55  PAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAE-----RRPEPRTRDLSGARGQTTGGEG 109
           PAGEP  G PG    P  P      G DG+        ++ EP    + G+RG    G G
Sbjct: 63  PAGEP--GKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEP---GVPGSRG--FPGRG 115

Query: 110 REGAQTREGKMGLPDSARRPRAPRTPLRPERPA-PGVPGGR 149
             G     G  GLP    R      P R   P  PG PG R
Sbjct: 116 IPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPR 156



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 49  ELPGAAPAGEP-RRGDPGVAPSPPAP------EDSDARGEDGAAAERRPEPRTRDLSGAR 101
           EL    P G+P RRG PG  P PP P       D D    +     R   P    + G +
Sbjct: 131 ELGRVGPVGDPGRRGPPG-PPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHK 189

Query: 102 GQ--TTGGEGREGAQTREGKMG 121
           G     G  GR+G +  EG  G
Sbjct: 190 GAKGEIGEPGRQGHKGEEGDQG 211



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPR-TRDLSGARG-------QTTGGEGREG 112
           RG PG+   P A      +G+ G   ER P  R    L GA G        + G  GR+G
Sbjct: 573 RGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDG 632

Query: 113 AQTREGKMGLPDSARRPRAPRTP 135
            +   G  G+P     P  P  P
Sbjct: 633 ERGPPGVAGIPGVPGPPGPPGLP 655


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 42/117 (35%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 55  PAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQT--TGGEGREG 112
           PAG+P  GD G   +P  P  +  RG  G   E  P P      GA GQ    GG+G  G
Sbjct: 772 PAGQP--GDKGEGGAPGLPGIAGPRGSPGERGETGP-PGPAGFPGAPGQNGEPGGKGERG 828

Query: 113 AQTREGKMGLPDSARRP--RAPRTPLRP-----ERPAPGVPGGRVAPCTCTSGSPSP 162
           A   +G+ G P  A  P    P  P  P     ER +PG PG    P     G P P
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFP--GARGLPGP 883



 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 19/137 (13%)

Query: 43   PLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARG 102
            P  +  +   + PAG    G PG A S  AP     RG+ G   ER        + G RG
Sbjct: 1057 PAGKSGDRGESGPAGPA--GAPGPAGSRGAPGPQGPRGDKGETGER----GAAGIKGHRG 1110

Query: 103  --QTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPG--GRVAPCTCTSG 158
                 G  G  G   ++G +G P     P  PR P+ P  P PG  G  G   P     G
Sbjct: 1111 FPGNPGAPGSPGPAGQQGAIGSPG----PAGPRGPVGPSGP-PGKDGTSGHPGPI----G 1161

Query: 159  SPSPRPRRLRVSGRGSP 175
             P PR  R      GSP
Sbjct: 1162 PPGPRGNRGERGSEGSP 1178



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 52/156 (33%), Positives = 61/156 (39%), Gaps = 27/156 (17%)

Query: 50  LPG--AAPAGEPRRGDPGVAPSPPAPEDSDARGEDGA-AAERRPEPRTRDLSGARGQTTG 106
           LPG   AP     RG PG    P  P  + ARG DGA  ++ +P P      G  G T G
Sbjct: 289 LPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGP-----PGPPG-TAG 342

Query: 107 GEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRR 166
             G  GA+   G  G P S   P         +R  PG  G   A      G P P    
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAP--------GQRGEPGPQGHAGA-----QGPPGPPGIN 389

Query: 167 LRVSGRG--SPAQLPPTYQLLGYHRAPPRASPGGWN 200
               G+G   PA +P    L+G  R PP   P G N
Sbjct: 390 GSPGGKGEMGPAGIPGAPGLMG-ARGPP--GPAGAN 422



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 46/152 (30%), Positives = 61/152 (40%), Gaps = 26/152 (17%)

Query: 13  PPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPA 72
           PP P  +   P  +  +    P   P  P  +  R   PG A A     G PG+      
Sbjct: 382 PPGPPGINGSPGGKGEMG---PAGIPGAPGLMGARGP-PGPAGAN----GAPGLRGGAGE 433

Query: 73  PEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAP 132
           P  + A+GE G   E R E     + GA+G+    +G++G+    G  GLP +A    AP
Sbjct: 434 PGKNGAKGEPGPRGE-RGEAGIPGVPGAKGE----DGKDGSPGEPGANGLPGAAGERGAP 488

Query: 133 --RTPLRP-----------ERPAPGVPGGRVA 151
             R P  P           ER APG  G R A
Sbjct: 489 GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGA 520



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 50/155 (32%), Positives = 60/155 (38%), Gaps = 24/155 (15%)

Query: 50  LPG-AAPAGEP----RRGDPGVAPSPPAPEDSD---ARGEDGAAAERRP--EPRTRDLSG 99
           LPG A P G P      G PG A  P AP  +     +GE GA  E+     P      G
Sbjct: 787 LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPG 846

Query: 100 ARGQT-----TGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP-GVPG--GRVA 151
             G        G +G  G+    G  G P +   P  P +   P  P P G PG  G   
Sbjct: 847 GSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPG 906

Query: 152 PC--TCTSGSP---SPRPRRLRVSGRGSP-AQLPP 180
           P   T   GSP    P+    +   +GSP AQ PP
Sbjct: 907 PAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPP 941



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 56   AGEPRRGDPGVAPSPPAPE-DSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQ 114
            AG P    P  +P P   + +S   G +G + ER P P  + L G  G T G  GR+G  
Sbjct: 959  AGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGP-PGPQGLPGLAG-TAGEPGRDGNP 1016

Query: 115  TREGKMGLPDSAR---------RPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPR 165
              +G  G   S            P AP  P  P  P P  P G+       SG   P   
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGD-RGESGPAGPAGA 1075

Query: 166  RLRVSGRGSPAQLPP 180
                  RG+P    P
Sbjct: 1076 PGPAGSRGAPGPQGP 1090



 Score = 37.7 bits (86), Expect = 0.017
 Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 25/116 (21%)

Query: 55  PAGEPRRGDPGVAPSPP-APEDSDARGEDGAAAERRPEPRTRDLSGARG----------- 102
           P GEP +  P   P PP A   S   G+DG +  R   P  R L G  G           
Sbjct: 202 PPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG-RPGRPGERGLPGPPGIKGPAGIPGFP 260

Query: 103 ---------QTTGGEGREGAQTREGKMGLP--DSARRPRAPRTPLRPERPAPGVPG 147
                       G +G  GA   +G+ GLP  + A  P  PR     ER  PG+PG
Sbjct: 261 GMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPR-GAPGERGRPGLPG 315



 Score = 37.0 bits (84), Expect = 0.028
 Identities = 40/134 (29%), Positives = 48/134 (35%), Gaps = 28/134 (20%)

Query: 47   RTELPGAAPAGEPRRGDPGVAPSPPAPE-DSDARGEDGAA-------------AERRPEP 92
            R E   A PAG P       AP P  P  D    GE GAA             A   P P
Sbjct: 1064 RGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGP 1123

Query: 93   RTRD-------LSGARGQT--TGGEGREGAQTREGKMGLPDSARRPRAPR----TPLRPE 139
              +         +G RG    +G  G++G     G +G P   R  R  R    +P  P 
Sbjct: 1124 AGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIG-PPGPRGNRGERGSEGSPGHPG 1182

Query: 140  RPAPGVPGGRVAPC 153
            +P P  P G   PC
Sbjct: 1183 QPGPPGPPGAPGPC 1196



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 43/124 (34%), Positives = 50/124 (40%), Gaps = 27/124 (21%)

Query: 50  LPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAER-RPEPRTRDLSGARGQTTGGE 108
           LPGAA  GE  RG PG    P  P  +   GE G A ER  P P     +G RG   G  
Sbjct: 478 LPGAA--GE--RGAPGFR-GPAGP--NGIPGEKGPAGERGAPGP-----AGPRG-AAGEP 524

Query: 109 GREGAQTREGKMGLPDSARRPRAPRTPL---------RPERPAPGVPGGRVAPCTCTSGS 159
           GR+G     G  G+P S   P +   P          RP  P P  P G+        G 
Sbjct: 525 GRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPG----VMGF 580

Query: 160 PSPR 163
           P P+
Sbjct: 581 PGPK 584



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 38/133 (28%), Positives = 51/133 (38%), Gaps = 28/133 (21%)

Query: 50  LPGA--APAGEPRRGDPGVA-----PSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARG 102
           +PG+   P  + + G PG       P PP P  S  RG+ G      P P+  D +  + 
Sbjct: 538 MPGSPGGPGSDGKPGPPGSQGESGRPGPPGP--SGPRGQPGVMGF--PGPKGNDGAPGKN 593

Query: 103 QTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSP 162
              GG G  G Q   GK G       P+ P        P P  PGG        +G P P
Sbjct: 594 GERGGPGGPGPQGPPGKNG----ETGPQGP--------PGPTGPGGDKG----DTGPPGP 637

Query: 163 RPRRLRVSGRGSP 175
           +  +  + G G P
Sbjct: 638 QGLQ-GLPGTGGP 649



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 57/220 (25%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 55  PAGEP-RRGDPGVAPSPPAPEDSDARG--EDGAAAERRPEPRTRDLSGARGQTTGG-EGR 110
           P G P R GDPG+   P +P      G  E      +   P+        G   GG  G 
Sbjct: 113 PPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGY 172

Query: 111 EGAQTREGKMGLPDSARRPRAPRTP---LRPERPAPGVPGGRVAPCTCTSGS-PSPRPRR 166
            G     G  G P ++  P +P +P     P  P    P G   P      S P+ +   
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGE 232

Query: 167 LRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLA--- 223
               GR     LP    + G     P   PG    +     D R   +  T AP L    
Sbjct: 233 SGRPGRPGERGLPGPPGIKG-----PAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGEN 287

Query: 224 LVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGAR 263
            +P  + A P  +  R A   R R  L  +  +R   GAR
Sbjct: 288 GLPGENGA-PGPMGPRGAPGERGRPGLPGAAGARGNDGAR 326



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 44/149 (29%), Positives = 55/149 (36%), Gaps = 28/149 (18%)

Query: 68  PSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGE-GREGAQTREGKMGLPDSA 126
           P+P  P      GE  A   + P   TR  +G   Q   G+ G  G   R G  G+P   
Sbjct: 75  PNPEIPF-----GECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQP 129

Query: 127 RRPRAP-------RTPLRPERPAP---------GVPGGRVAPCTCTSGSPSPRPRRLRVS 170
             P +P         P  P+  +P         GV  G +A     +G P P P     S
Sbjct: 130 GSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP-PGPPGTS 188

Query: 171 GR-GSPAQLPPTYQLLGYHRAPPRASPGG 198
           G  GSP    P YQ  G    P +A P G
Sbjct: 189 GHPGSPGS--PGYQ--GPPGEPGQAGPSG 213


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 75/280 (26%), Positives = 93/280 (33%), Gaps = 53/280 (18%)

Query: 1   MQIPPETPLSL----------RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTEL 50
           +++PP  P +L          RPP     +  P  +      RP S+P  P   A     
Sbjct: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210

Query: 51  PGAA------PAGEPRRG---------------------DPGVAPSPPAPEDSDARGEDG 83
           PG        PA E R G                      P  +P+PPAPE  + R   G
Sbjct: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRA-PG 269

Query: 84  AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP 143
           + A RRP PR    +   G  T G  R G   R G    P ++      R   R  R   
Sbjct: 270 STAGRRPRPREPQAAEESGCATVGL-RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRG- 327

Query: 144 GVPGGRVAPCTCTSGSPSPRPRR---------LRV-SGRGSPAQLPPTYQLLGYHRAPPR 193
              GG       T G  SP  RR         LR  SG GS   L  T      H A  R
Sbjct: 328 --GGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQR 385

Query: 194 ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
              GG N ++      R   RS    P +        +RP
Sbjct: 386 FG-GGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRP 424


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 75/280 (26%), Positives = 93/280 (33%), Gaps = 53/280 (18%)

Query: 1   MQIPPETPLSL----------RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTEL 50
           +++PP  P +L          RPP     +  P  +      RP S+P  P   A     
Sbjct: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210

Query: 51  PGAA------PAGEPRRG---------------------DPGVAPSPPAPEDSDARGEDG 83
           PG        PA E R G                      P  +P+PPAPE  + R   G
Sbjct: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRA-PG 269

Query: 84  AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP 143
           + A RRP PR    +   G  T G  R G   R G    P ++      R   R  R   
Sbjct: 270 STAGRRPRPREPQAAEESGCATVGL-RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRG- 327

Query: 144 GVPGGRVAPCTCTSGSPSPRPRR---------LRV-SGRGSPAQLPPTYQLLGYHRAPPR 193
              GG       T G  SP  RR         LR  SG GS   L  T      H A  R
Sbjct: 328 --GGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQR 385

Query: 194 ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
              GG N ++      R   RS    P +        +RP
Sbjct: 386 FG-GGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRP 424


>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 75/280 (26%), Positives = 93/280 (33%), Gaps = 53/280 (18%)

Query: 1   MQIPPETPLSL----------RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTEL 50
           +++PP  P +L          RPP     +  P  +      RP S+P  P   A     
Sbjct: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210

Query: 51  PGAA------PAGEPRRG---------------------DPGVAPSPPAPEDSDARGEDG 83
           PG        PA E R G                      P  +P+PPAPE  + R   G
Sbjct: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRA-PG 269

Query: 84  AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP 143
           + A RRP PR    +   G  T G  R G   R G    P ++      R   R  R   
Sbjct: 270 STAGRRPRPREPQAAEESGCATVGL-RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRG- 327

Query: 144 GVPGGRVAPCTCTSGSPSPRPRR---------LRV-SGRGSPAQLPPTYQLLGYHRAPPR 193
              GG       T G  SP  RR         LR  SG GS   L  T      H A  R
Sbjct: 328 --GGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQR 385

Query: 194 ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
              GG N ++      R   RS    P +        +RP
Sbjct: 386 FG-GGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRP 424


>gi|50428940 mediator complex subunit 25 [Homo sapiens]
          Length = 747

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 60  RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGK 119
           ++  PG+ P      +  AR        R P+P+ +   GA G T   + +  AQ   G 
Sbjct: 562 QQAPPGLGPIL----EDQARPSQNLLQLRPPQPQPQGTVGASGATGQPQPQGTAQPPPGA 617

Query: 120 -MGLPDSARRPRAPRTPLRPERPA--PGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPA 176
             G P +A  P  P   LRP+ P   P +    + P    +G P P+     +   G+PA
Sbjct: 618 PQGPPGAASGPPPPGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGAPA 677

Query: 177 QLPPTYQLLGYHR-APPRASP 196
            LPP +Q LG  +  PP   P
Sbjct: 678 LLPPPHQGLGQPQLGPPLLHP 698



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 50/184 (27%), Positives = 65/184 (35%), Gaps = 46/184 (25%)

Query: 4   PPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGD 63
           P +  L LRPP P       QP+  +  +    +P        + +     P G P+ G 
Sbjct: 578 PSQNLLQLRPPQP-------QPQGTVGASGATGQP--------QPQGTAQPPPGAPQ-GP 621

Query: 64  PGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLP 123
           PG A  PP P         GA     P+ R+  L+    QT                G+P
Sbjct: 622 PGAASGPPPPGPILRPQNPGA----NPQLRSLLLNPPPPQT----------------GVP 661

Query: 124 DSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGS-PAQLPPTY 182
                P+A    L+P    PG P   + P     G P   P  L      S PAQLPP  
Sbjct: 662 P----PQASLHHLQP----PGAP-ALLPPPHQGLGQPQLGPPLLHPPPAQSWPAQLPPRA 712

Query: 183 QLLG 186
            L G
Sbjct: 713 PLPG 716


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 23/179 (12%)

Query: 5   PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP 64
           P  P   R P P   R  P P     ++ P+ R   P P  +R     A+P   P+R   
Sbjct: 573 PTPPPRRRTPSPPPRRRSPSPRR---YSPPIQRRYSPSPPPKRRT---ASPPPPPKRR-- 624

Query: 65  GVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQ----TREGKM 120
             +PSPP             +    P+ R+  ++  R  +   + R+G+     TRE + 
Sbjct: 625 -ASPSPPPKRR--------VSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARS 675

Query: 121 GLPDSARRPRA-PRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQL 178
             P+    P   PR P     P P   G   +P    S SPS RP R RVS    P ++
Sbjct: 676 PQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIR-RVSRTPEPKKI 733



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 71/292 (24%), Positives = 96/292 (32%), Gaps = 26/292 (8%)

Query: 4   PPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGD 63
           PP TP    PP      T PQ   R   +R    P        RT        G  +R  
Sbjct: 403 PPATP----PPKTRHSPT-PQQSNRTRKSRVSVSP-------GRTSGKVTKHKGTEKRES 450

Query: 64  PGVAPSPPAPEDSDARGEDG---AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
           P  AP P   E S++  + G   AAA+   + R       +  +  G        R  + 
Sbjct: 451 PSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRS 510

Query: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLP- 179
            + +     R   +P R   P+P       +P      SPSP P R R S   SPA  P 
Sbjct: 511 HVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRS--PSPAPPPR 568

Query: 180 ----PTYQLLGYHRAPP----RASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRA 231
               PT        +PP      SP  ++             +  T +PP       S +
Sbjct: 569 RRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 628

Query: 232 RPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRK 283
            P   RV  +   + R      R S  LS    +G +   STR      P K
Sbjct: 629 PPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNK 680



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 63/261 (24%), Positives = 91/261 (34%), Gaps = 38/261 (14%)

Query: 12  RPPDPNSVRTVPQPETRLDHNRP---MSRPIFPVPLARRTELPGAAPAGEPRRGDPGV-- 66
           R P P    +  + E +  H+R     ++   P P   + E     P    +  +P V  
Sbjct: 178 RSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQE 237

Query: 67  ---------APSP-PAPEDSDARGEDGAAAERRPE---PRTRDLSGARGQT-------TG 106
                     P P P PE  +   E  +  E+  E   PR+R  S +R +T       T 
Sbjct: 238 ATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTR 297

Query: 107 GEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRR 166
              R  +++R        S RR  +PR    P R  P        P    S SP  R RR
Sbjct: 298 PRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPP-------PPRHRRSRSPVRRRRR 350

Query: 167 LRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETL--NTEDARRRARSATQAPPLAL 224
              S  GS +    +       + P R S     T  L  +    RRR R +  A P   
Sbjct: 351 SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATP--- 407

Query: 225 VPARSRARPAHLRVRAAGRSR 245
            P ++R  P   +     +SR
Sbjct: 408 -PPKTRHSPTPQQSNRTRKSR 427



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 56/242 (23%), Positives = 76/242 (31%), Gaps = 38/242 (15%)

Query: 74  EDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPR 133
           ED D R ++   + R    R+R     + ++     R     RE K     S R     R
Sbjct: 149 EDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSR 208

Query: 134 TPL--------RPERPAPGVPGGRVAPCTCTSGS---------PSPRPR----------- 165
           +P          PE P P V     +    TS S         P P P+           
Sbjct: 209 SPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKE 268

Query: 166 ----RLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPP 221
               + R   R        T      H  P R       + +     + RR  S  +  P
Sbjct: 269 KEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTP 328

Query: 222 LALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLP 281
               P R    P H R R+  R R R   +LS  S   S +R R    +   R +  S P
Sbjct: 329 ----PRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTS--SPP 382

Query: 282 RK 283
           RK
Sbjct: 383 RK 384



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 14  PDPNSVRTVPQPETRLDHNRPMSR--PIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPP 71
           P P SVR V    +      P ++  P  P P+  ++     +PA  P +      PSP 
Sbjct: 739 PSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPA-VPVKKAKSPTPSPS 797

Query: 72  APEDSDARGEDGAAAERRPEPRTRD 96
            P +SD  G      +++ +   +D
Sbjct: 798 PPRNSDQEGGGKKKKKKKDKKHKKD 822


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 57/208 (27%), Positives = 70/208 (33%), Gaps = 35/208 (16%)

Query: 52  GAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGRE 111
           GA PA  P  G PG AP PP       R   G    +RP P     S  R     G    
Sbjct: 72  GAGPAA-PAEGAPGAAPEPPPA----GRARPGGGGPQRPGPP----SPRRPLVPAGPAPP 122

Query: 112 GAQTR---EGKMG----LPDSARRPRAPR-TPLRPERPA-PGVPGGRVAPCTCTSGSPSP 162
            A+ R   EG  G    +P +A     P   P  P +PA P     R  P       P P
Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP 182

Query: 163 RPRRLRVSGRGSPAQLPPTYQLLGYHRAP-----------------PRASPGGWNTETLN 205
            P   + +G G+   L  +  LL  H A                  P+ +  G   +T  
Sbjct: 183 GPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPP 242

Query: 206 TEDARRRARSATQAPPLALVPARSRARP 233
              A      A  +PP A  PA   A P
Sbjct: 243 FVGAAAPPAPAAPSPPAAPAPAAPAAAP 270



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 51/184 (27%), Positives = 63/184 (34%), Gaps = 25/184 (13%)

Query: 1   MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
           +Q PP    +  PP P +      P        P   P  P  LAR        P G P 
Sbjct: 238 IQTPPFVGAAA-PPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLAR--------PPGHP- 287

Query: 61  RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
            G P  AP+ P P  +   G  GAA    P P     +G  GQ   G G   A    G  
Sbjct: 288 AGPPTAAPAVPPPAAAQNGGSAGAAP--APAPAAGGPAGVSGQP--GPGAAAAAPAPGVK 343

Query: 121 GLPDSARR-----PRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSP 175
              +S +R     P A +T L    PA       + P   T     P P  +     G+P
Sbjct: 344 A--ESPKRVVQAAPPAAQT-LAASGPASTAASMVIGP---TMQGALPSPAAVPPPAPGTP 397

Query: 176 AQLP 179
             LP
Sbjct: 398 TGLP 401



 Score = 33.5 bits (75), Expect = 0.31
 Identities = 47/171 (27%), Positives = 57/171 (33%), Gaps = 28/171 (16%)

Query: 5   PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP 64
           P  P +  PP P      P P T     RP   P  P   A     P AA  G      P
Sbjct: 263 PAAPAAAPPPPP------PAPATLA---RPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAP 313

Query: 65  GVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGAR--------GQTTGGEGREG---- 112
             AP+   P     +   GAAA   P P  +  S  R         QT    G       
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAA-AAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAAS 372

Query: 113 ---AQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVA--PCTCTSG 158
                T +G +  P +A  P AP TP    + A G     ++  P   TSG
Sbjct: 373 MVIGPTMQGALPSP-AAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSG 422



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 44/205 (21%), Positives = 63/205 (30%), Gaps = 20/205 (9%)

Query: 34  PMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRP--- 90
           P+ +P  P  + +     GAA    P    P  AP+P AP  +        A   RP   
Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGH 286

Query: 91  -------EPRTRDLSGARGQTTGGEGREGAQTREGKMGL---PDSARRPRAPRTPLRPER 140
                   P     + A+   + G     A    G  G+   P       AP   ++ E 
Sbjct: 287 PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAES 346

Query: 141 PAPGVPGGRVAPCTCTSGSPSPRPRRLRV-----SGRGSPAQLPPTYQLLGYHRAPPRAS 195
           P   V     A  T  +  P+     + +         SPA +PP     G     P+ +
Sbjct: 347 PKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAP--GTPTGLPKGA 404

Query: 196 PGGWNTETLNTEDARRRARSATQAP 220
            G        T  A      AT  P
Sbjct: 405 AGAVTQSLSRTPTATTSGIRATLTP 429


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 61/210 (29%), Positives = 74/210 (35%), Gaps = 34/210 (16%)

Query: 13  PPDPNSV--RTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGE-PRRGDPGVAPS 69
           PP P +    T   PET  +   P  +P  P+P   R       P G+ P RG P     
Sbjct: 385 PPTPKTAWAETSRPPET--EPGPPAPKP--PLPPPHRGPAGNWGPPGDYPDRGGPPC--K 438

Query: 70  PPAPEDSD---------ARGEDGAAAER---RPEPRTRDLSGARGQTTGGEGREGAQTRE 117
           PPAPED D         +  E   A ER   R E   R +   R         E  +  +
Sbjct: 439 PPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACA----EKLKRLD 494

Query: 118 GKMGLPDSARRPRAPRTPLRPERPA--PGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSP 175
            K G PD   +      P  P  PA  P VP    AP      +P P       +    P
Sbjct: 495 EKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAP-----PAPPPASAPTPETEPEEP 549

Query: 176 AQLPPTYQ--LLGYHRAPPRASPGGWNTET 203
           AQ PP       G   AP   S GG  + T
Sbjct: 550 AQAPPAQSTPTPGVAAAPTLVSGGGSTSST 579



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 53/193 (27%), Positives = 67/193 (34%), Gaps = 50/193 (25%)

Query: 62   GDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGE---------GREG 112
            G P   P+P     S+ R E G+  E  P+ R +     RG  TG E          +E 
Sbjct: 1071 GGPNHPPAPRGRTASETRSE-GSEYEEIPKRRRQ-----RGSETGSETHESDLAPSDKEA 1124

Query: 113  AQTREGKMGLPDSARRPRAPRTPLRPERPAP--------------GVP------GGRVAP 152
               +EG +      + P AP  P  P  PAP              GVP      GGR  P
Sbjct: 1125 PTPKEGTL-----TQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPP 1179

Query: 153  CTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASP-------GGWNTETLN 205
              C   SP   P +     +     LPP+ + L     P   SP       GG N    +
Sbjct: 1180 QVCPGWSP---PAKSLAPKKPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMED 1236

Query: 206  TEDARRRARSATQ 218
             E  RRR     Q
Sbjct: 1237 GERPRRRRHGRAQ 1249



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 49/180 (27%), Positives = 63/180 (35%), Gaps = 35/180 (19%)

Query: 38   PIFPVPLARRTELPGAAPAGEPRRG-------DPGVAPSP-PAPEDSDARGEDGAAAERR 89
            P  P P       PG    G P          +PG  P P P   D  A+ +     +  
Sbjct: 826  PPVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEP 885

Query: 90   PEPRTRDLSG-------ARGQTTGGEG-----REG-AQTREGKMGLPDSARRPRAPRTPL 136
            P+  T  L+G       ARG  +GG+G     RE   +TR G    P S+RR   P  P 
Sbjct: 886  PKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPR--PGSSRRGIPPEEPG 943

Query: 137  RPER-------PAPGVPGGRVAPCTCTSGS-----PSPRPRRLRVSGRGSPAQLPPTYQL 184
             P R       P P      + P     G      P P P ++     G P + PP   L
Sbjct: 944  APPRRAGPIKKPPPPTKVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNL 1003



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 64/266 (24%), Positives = 88/266 (33%), Gaps = 51/266 (19%)

Query: 5   PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPG---------AAP 55
           P TP+   PP P ++  VP P+       P  + ++P  L R   +P            P
Sbjct: 673 PPTPVPPSPPQPVTLGAVPAPQA----PPPPPKALYPGALGRPPPMPPMNFDPRWMMIPP 728

Query: 56  AGEPR--RG-------DPGVAPSPPAP-EDSDARGEDGAAAERRPEPRTRDLS------- 98
             +PR  +G        PGV PS   P E SD+ G      +R      R+         
Sbjct: 729 YVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFDRHAPAMLRERGTPPVDPK 788

Query: 99  ----GARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPA--PGVPGGRVAP 152
               G     T  E R             D   R   P  P  P   A  PG P      
Sbjct: 789 LAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFP------ 842

Query: 153 CTCTSGSPSPRPRRLRVSGRG-SPAQLPP-TYQLLGYHRAPPRASPGGWNTETLNTEDAR 210
               +G+P P   R  +   G  P   PP + ++      PP+  P    T  L   +A 
Sbjct: 843 ---ENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAG 899

Query: 211 RR----ARSATQAPPLALVPARSRAR 232
           R+      S  Q PP     +R+  R
Sbjct: 900 RKPARGVGSGGQGPPPPRRESRTETR 925



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 53/226 (23%), Positives = 70/226 (30%), Gaps = 47/226 (20%)

Query: 4   PPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGD 63
           PP  P  L  P      + P PET  +            P A+ T  PG A A     G 
Sbjct: 521 PPAVPKELPAPPAPPPASAPTPETEPEEPAQ-------APPAQSTPTPGVAAAPTLVSGG 573

Query: 64  PGVAP--------SPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG-GEGREGAQ 114
              +         SP  P+     G +    E  P P T  +     +  G G  R+   
Sbjct: 574 GSTSSTSSGSFEASPVEPQLPSKEGPE--PPEEVPPPTTPPVPKVEPKGDGIGPTRQPPS 631

Query: 115 TREG----KMGLPDSARRPR--------------------APRTPLRPERPAPGVPGGRV 150
              G    +  LP   +R +                    AP TP+ P  P P   G   
Sbjct: 632 QGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVP 691

Query: 151 APCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASP 196
           AP      +P P P+ L     G P  +PP      +   PP   P
Sbjct: 692 AP-----QAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDP 732


>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 84/323 (26%), Positives = 111/323 (34%), Gaps = 82/323 (25%)

Query: 45  ARRTELP----GAAPAGEPRRGDPGVAPSPPAPEDSDARGED----GAAAERRPEPRTRD 96
           AR+ +LP    G  P   P RG  G++ +P  P  + AR +       +  R PEP    
Sbjct: 105 ARQAQLPRPVSGVRP---PPRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPEPIPAS 161

Query: 97  LSGARGQTTGGEG-------REGAQTREGKMGLPDSARRPRAPRTPLRPERP-------- 141
            +   G T  G         ++G  + E    +P   +R  AP  P RP  P        
Sbjct: 162 AAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGL 221

Query: 142 ----APGVPGGRVAPCTCT----------SGSPSPRPRRLRVSGRG-------------S 174
                P   GGR    T T          S  PS RP     S                S
Sbjct: 222 SVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRNPS 281

Query: 175 PAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAP--------PLALVP 226
           P   P   +L     +PPRA  GG ++   +  D++ R   A  AP        P A  P
Sbjct: 282 PRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNP 341

Query: 227 ARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPST 286
           A SR  P   +   + R   R         R +  ARE GR G              P +
Sbjct: 342 AESRRGPGPAQGPPSRRDEPR---------RVVIAARECGREG-----------SELPPS 381

Query: 287 GFAALSRRVNQAISC-LGTESAL 308
           G     RR + + SC  G ES L
Sbjct: 382 GEETPGRRKSPSQSCKKGGESIL 404


>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 84/323 (26%), Positives = 111/323 (34%), Gaps = 82/323 (25%)

Query: 45  ARRTELP----GAAPAGEPRRGDPGVAPSPPAPEDSDARGED----GAAAERRPEPRTRD 96
           AR+ +LP    G  P   P RG  G++ +P  P  + AR +       +  R PEP    
Sbjct: 105 ARQAQLPRPVSGVRP---PPRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPEPIPAS 161

Query: 97  LSGARGQTTGGEG-------REGAQTREGKMGLPDSARRPRAPRTPLRPERP-------- 141
            +   G T  G         ++G  + E    +P   +R  AP  P RP  P        
Sbjct: 162 AAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGL 221

Query: 142 ----APGVPGGRVAPCTCT----------SGSPSPRPRRLRVSGRG-------------S 174
                P   GGR    T T          S  PS RP     S                S
Sbjct: 222 SVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRNPS 281

Query: 175 PAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAP--------PLALVP 226
           P   P   +L     +PPRA  GG ++   +  D++ R   A  AP        P A  P
Sbjct: 282 PRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNP 341

Query: 227 ARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPST 286
           A SR  P   +   + R   R         R +  ARE GR G              P +
Sbjct: 342 AESRRGPGPAQGPPSRRDEPR---------RVVIAARECGREG-----------SELPPS 381

Query: 287 GFAALSRRVNQAISC-LGTESAL 308
           G     RR + + SC  G ES L
Sbjct: 382 GEETPGRRKSPSQSCKKGGESIL 404


>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
          Length = 1006

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 46/144 (31%), Positives = 56/144 (38%), Gaps = 22/144 (15%)

Query: 12  RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP---GVAP 68
           R   P    T P  E       P + P +  PL R   LP   P   P    P   GV+P
Sbjct: 313 RAGTPPQQPTAPSSEWPGPQRSPGTGPRWTAPLPRPAPLPAKRPGDSPASKRPRPGGVSP 372

Query: 69  ---SPPAPED----SDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMG 121
               PP  E+    S+A GE G    R P+     L G R Q   G+GREG    EG   
Sbjct: 373 EARDPPKGENPLCSSEAAGETGPTQVRGPDA----LGGGRLQ---GKGREGKAPGEGVSP 425

Query: 122 LPDSARRPRAPRTPLRPERPAPGV 145
            P   R  + PR+     RP  G+
Sbjct: 426 RPAPPRLGKPPRS-----RPPQGL 444


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,645,141
Number of Sequences: 37866
Number of extensions: 1317560
Number of successful extensions: 10015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 1293
Number of HSP's that attempted gapping in prelim test: 6803
Number of HSP's gapped (non-prelim): 3617
length of query: 371
length of database: 18,247,518
effective HSP length: 104
effective length of query: 267
effective length of database: 14,309,454
effective search space: 3820624218
effective search space used: 3820624218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.