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Search of human proteins with 119964723
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119964723 immediate early response 3 [Homo sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119964723 immediate early response 3 [Homo sapiens] 320 3e-88
gi|116063568 hypothetical protein LOC54863 [Homo sapiens] 49 2e-06
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 41 4e-04
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 39 0.002
gi|55741677 SET domain containing 1A [Homo sapiens] 39 0.002
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 37 0.007
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 37 0.007
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 37 0.007
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 37 0.007
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 37 0.007
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 37 0.007
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 37 0.007
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 36 0.012
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 36 0.012
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 36 0.015
gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens] 36 0.015
gi|149944516 tet oncogene family member 3 [Homo sapiens] 35 0.020
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 35 0.026
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [... 35 0.034
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.034
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 34 0.057
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.075
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.075
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.075
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho... 33 0.075
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho... 33 0.075
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 33 0.075
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 33 0.098
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.098
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 33 0.098
>gi|119964723 immediate early response 3 [Homo sapiens]
Length = 156
Score = 320 bits (820), Expect = 3e-88
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK 60
MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK
Sbjct: 1 MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK 60
Query: 61 RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASL 120
RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASL
Sbjct: 61 RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASL 120
Query: 121 APTPVSAVLEPFNLTSEPSDYALDLSTFLQQHPAAF 156
APTPVSAVLEPFNLTSEPSDYALDLSTFLQQHPAAF
Sbjct: 121 APTPVSAVLEPFNLTSEPSDYALDLSTFLQQHPAAF 156
>gi|116063568 hypothetical protein LOC54863 [Homo sapiens]
Length = 423
Score = 48.5 bits (114), Expect = 2e-06
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 19 PAPSTIPGPRRGS--GPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRRQLP 76
P P P R P+ FTFD PA P+ P R R+RSR VLYP R+ P
Sbjct: 58 PRPGCSPRAPRADLDQPKFFTFD---SPAELPSRTP---RKKRRRSRLVLYPETSRKYRP 111
Query: 77 -VEEPNPAKRLLFLLLTIVFCQILMAEEGV 105
VE + A+R L LL+ IV Q+L A E +
Sbjct: 112 RVEHRSRAQRCLLLLVAIVGFQVLNAIENL 141
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 41.2 bits (95), Expect = 4e-04
Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 33/138 (23%)
Query: 6 SCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRV 65
S H T + P +P+ PR P P PA+APA P+
Sbjct: 2416 SAHQTRSTTTPPRCSPARERVPRPAPRPR-------PTPASAPAAIPA------------ 2456
Query: 66 LYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLAPTPV 125
L P V +P+ PNP +TI+ IL P+P PP P +S A TP
Sbjct: 2457 LVPVPVSAPVPISAPNP--------ITILPVHIL------PSPPPPSQIPPCSSPACTPP 2502
Query: 126 SAVLEPFNLTSEPSDYAL 143
A P T P+ L
Sbjct: 2503 PACTPPPAHTPPPAQTCL 2520
Score = 32.3 bits (72), Expect = 0.17
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 12 TILQAPTPAPSTIP----GPRRGSGPEIFTFDPLPEPAAAPAGRPS---ASRGHRKRSRR 64
T + AP+PAP P P G+ P + P P AP+ P AS
Sbjct: 1595 TAILAPSPAPPLAPLPVLAPSPGAAP-VLASSQTPVPVMAPSSTPGTSLASASPVPAPTP 1653
Query: 65 VLYPRVVRRQLPVEEPNP 82
VL P + LP P+P
Sbjct: 1654 VLAPSSTQTMLPAPVPSP 1671
Score = 30.8 bits (68), Expect = 0.49
Identities = 33/134 (24%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 14 LQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRR 73
+ +P PS++PGP P+P P ++P P +S V P +
Sbjct: 1397 ISSPLHVPSSLPGP---------ASSPMPIPNSSPLASPVSS--------TVSVP--LSS 1437
Query: 74 QLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLAPTPVSAVLEPFN 133
LP+ P LTI L PA L P A + P L P
Sbjct: 1438 SLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSG 1497
Query: 134 LTSEPSDYALDLST 147
+ S L L+T
Sbjct: 1498 ASPSASALTLGLAT 1511
Score = 29.3 bits (64), Expect = 1.4
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 10 TMTILQAPTPAPSTI-----PGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK---- 60
T T + APTPAP + R SG E+ + L A+ A RP A+ G K
Sbjct: 1155 TTTAVPAPTPAPQRLILSPDMQARLPSG-EVVSIGQL----ASLAQRPVANAGGSKPLTF 1209
Query: 61 --RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAA 118
+ ++ RQL V +P P +R + L++ L+++ PA + A A
Sbjct: 1210 QIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLISQ---PAHVALIQAV-AP 1265
Query: 119 SLAPTPVSAVLEPFNLTSEPSDYALDLSTFLQQHP 153
+ PTPVS VL ++ P+ L L Q P
Sbjct: 1266 TPGPTPVS-VLPSSTPSTTPAPTGLSLPLAANQVP 1299
Score = 28.9 bits (63), Expect = 1.8
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 19/71 (26%)
Query: 32 GPEIFTFDPLPEPAAAPAGRPSASRGH-------RKRSRRVLYPRVVRRQL--------- 75
G E+ F LP+P A+P G S H R VL+P+ QL
Sbjct: 1919 GTEVLDFCTLPQPVASPIGPRSPGPSHPTFWTYTEAAHRAVLFPQQRLDQLSEIIERFIF 1978
Query: 76 ---PVEEPNPA 83
PVE P P+
Sbjct: 1979 VMPPVEAPPPS 1989
Score = 27.3 bits (59), Expect = 5.4
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 80 PNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLAPTP 124
PNPA LL A + + PL P AP A LAP+P
Sbjct: 1563 PNPAPAQASLL-----APASSASQALATPLAPMAAPQTAILAPSP 1602
>gi|153791535 general control of amino acid synthesis 5-like 2
[Homo sapiens]
Length = 837
Score = 38.9 bits (89), Expect = 0.002
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 14 LQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRG 57
LQ+P PAP+ P P S P P P PA APA P+ S G
Sbjct: 19 LQSPAPAPTPTPAPSPASAP---IPTPTPAPAPAPAAAPAGSTG 59
Score = 34.7 bits (78), Expect = 0.034
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 15 QAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPS 53
QAPTPAP+ P P + P T P P PA+AP P+
Sbjct: 6 QAPTPAPAAQPRPLQSPAPAP-TPTPAPSPASAPIPTPT 43
Score = 31.6 bits (70), Expect = 0.29
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 9 PTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAG 50
P T AP+PA + IP P T P P PAAAPAG
Sbjct: 24 PAPTPTPAPSPASAPIPTP---------TPAPAPAPAAAPAG 56
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 38.5 bits (88), Expect = 0.002
Identities = 42/131 (32%), Positives = 51/131 (38%), Gaps = 20/131 (15%)
Query: 6 SCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRV 65
S P + PTPAP +P P R +G + PLPE A+PA RP+ S
Sbjct: 1076 SASPPPREVPVPTPAPVEVPVPERVAGSPV---TPLPEQEASPA-RPAGPTEESPPS-AP 1130
Query: 66 LYPRVVRRQLPVEEPNPAKRLLFLL----------LTIVFCQILMAEEGVPAPLPPEDAP 115
L P P P P +R + T+ F I E VPAP PP P
Sbjct: 1131 LRPPEPPAGPPAPAPRPDERPSSPIPLLPPPKKRRKTVSFSAI----EVVPAPEPPPATP 1186
Query: 116 NAASLAPTPVS 126
A P P S
Sbjct: 1187 PQAKF-PGPAS 1196
Score = 27.3 bits (59), Expect = 5.4
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 78 EEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLAPTPVSAVLE 130
E P L +LL + + PA PPE P A+L +P VLE
Sbjct: 1285 EAERPRPLLSHILLEHNYALAVKPTPPAPALRPPEPVPAPAALFSSPADEVLE 1337
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 37.0 bits (84), Expect = 0.007
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 14 LQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPR---- 69
L+ P+P+PS P RR P P P+ +P+ PS +RG R + P
Sbjct: 112 LRKPSPSPS--PSLRRRRARNSPGIRPSPSPSPSPSPSPSPARGGRWTTCASSSPALPGT 169
Query: 70 --VVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLA 121
V+RR PV P+P V L++ VPA L P + +A
Sbjct: 170 DGVLRRMSPVCPPSP-----------VVLACLVSSPHVPASLTPPPTRGSPEIA 212
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 37.0 bits (84), Expect = 0.007
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 14 LQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPR---- 69
L+ P+P+PS P RR P P P+ +P+ PS +RG R + P
Sbjct: 112 LRKPSPSPS--PSLRRRRARNSPGIRPSPSPSPSPSPSPSPARGGRWTTCASSSPALPGT 169
Query: 70 --VVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLA 121
V+RR PV P+P V L++ VPA L P + +A
Sbjct: 170 DGVLRRMSPVCPPSP-----------VVLACLVSSPHVPASLTPPPTRGSPEIA 212
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 37.0 bits (84), Expect = 0.007
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 14 LQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPR---- 69
L+ P+P+PS P RR P P P+ +P+ PS +RG R + P
Sbjct: 112 LRKPSPSPS--PSLRRRRARNSPGIRPSPSPSPSPSPSPSPARGGRWTTCASSSPALPGT 169
Query: 70 --VVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLA 121
V+RR PV P+P V L++ VPA L P + +A
Sbjct: 170 DGVLRRMSPVCPPSP-----------VVLACLVSSPHVPASLTPPPTRGSPEIA 212
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 37.0 bits (84), Expect = 0.007
Identities = 37/126 (29%), Positives = 43/126 (34%), Gaps = 25/126 (19%)
Query: 17 PTPAPSTIPGP----RRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVR 72
P P P PGP S E++T +P PEPA PA P+ P
Sbjct: 55 PEPCPELAPGPCPEATSESATELYT-EPTPEPATEPASEPAPEPATEPAPEPATEPAPEP 113
Query: 73 RQLPVEE--PNPAKRLLFLLLTIVFCQILMAEEGVPAPLP---PEDAPN-AASLAPTPVS 126
P E P P A E VP P P PE AP A P PV+
Sbjct: 114 APEPATESAPEPTPE--------------PALESVPEPAPELTPEVAPELAPEPTPEPVT 159
Query: 127 AVLEPF 132
+ F
Sbjct: 160 ELAPEF 165
Score = 29.3 bits (64), Expect = 1.4
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 15/71 (21%)
Query: 16 APTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRRQL 75
A PAP P P S PE P PEPA P+ L P V
Sbjct: 106 ATEPAPEPAPEPATESAPE-----PTPEPALESVPEPAPE----------LTPEVAPELA 150
Query: 76 PVEEPNPAKRL 86
P P P L
Sbjct: 151 PEPTPEPVTEL 161
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 37.0 bits (84), Expect = 0.007
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 9 PTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSAS 55
PT+ APTP P+ P P IFT P P PAA PA P+++
Sbjct: 370 PTLIPAFAPTPVPAPTPAP-------IFTPAPTPMPAATPAAIPTSA 409
Score = 28.1 bits (61), Expect = 3.2
Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 1/118 (0%)
Query: 9 PTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYP 68
P +T +P PAP P P S P D P + PA P + + + V P
Sbjct: 190 PLVTTNFSPLPAPICPPAPGSASVPHSVP-DAFQVPLSVPAPVPHSGLVPVQVATSVPAP 248
Query: 69 RVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLAPTPVS 126
+P P P + + VPA PP ++ AP P+S
Sbjct: 249 SPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSGPVPLSAPAPAPLS 306
Score = 27.3 bits (59), Expect = 5.4
Identities = 32/108 (29%), Positives = 40/108 (37%), Gaps = 19/108 (17%)
Query: 27 PRRGSGPEIFT-FDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRRQLPVEEPNPAKR 85
P G+ P + T F PLP P PA SAS H P + L V P P
Sbjct: 184 PVEGTLPLVTTNFSPLPAPICPPAPG-SASVPHS-------VPDAFQVPLSVPAPVPHSG 235
Query: 86 LLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLAPTPVSAVLEPFN 133
L+ + VPAP PP A + AP V ++ N
Sbjct: 236 LV----------PVQVATSVPAPSPPLAPVPALAPAPPSVPTLISDSN 273
Score = 26.9 bits (58), Expect = 7.0
Identities = 40/145 (27%), Positives = 49/145 (33%), Gaps = 35/145 (24%)
Query: 14 LQAPTPAPSTIP----------GPRRGSGPEIFTFDPLPEPAAAP--AGRPSASRGHRKR 61
L AP PAP ++P P S P + P+P P AP A P A+
Sbjct: 297 LSAPAPAPLSVPVSAPPLALIQAPVPPSAPTL-VLAPVPTPVLAPMPASTPPAAPA---- 351
Query: 62 SRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLA 121
P V P P + A VPAP P AP + A
Sbjct: 352 ------PPSVPMPTPTPSSGPPSTPTLIPA--------FAPTPVPAPTP---AP-IFTPA 393
Query: 122 PTPVSAVLEPFNLTSEPSDYALDLS 146
PTP+ A TS P + LS
Sbjct: 394 PTPMPAATPAAIPTSAPIPASFSLS 418
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 37.0 bits (84), Expect = 0.007
Identities = 39/145 (26%), Positives = 51/145 (35%), Gaps = 34/145 (23%)
Query: 3 HSRSCHPTMTILQAPTPA-------PSTIPGPRRGSGPEIF-------TFDPL--PEPAA 46
HS S P + PTPA P+ + R SGP+ T + L P PA+
Sbjct: 354 HSPSGDPKADKRRGPTPADRDRPSVPAPVQAGGRSSGPQRAGSLKREKTEERLGSPSPAS 413
Query: 47 APAGRPSASRGHRKRSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVP 106
RP S G R R + + +R P P+P K +P
Sbjct: 414 RTPARPFGSVGRRSRLAQDFMAQCLRESSPAARPSPEK----------------VPPVLP 457
Query: 107 APLPPEDAPNAASLAPTPVSAVLEP 131
APL P PTP A +P
Sbjct: 458 APLTPHGTSPVG--PPTPPPAPTDP 480
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 37.0 bits (84), Expect = 0.007
Identities = 39/145 (26%), Positives = 51/145 (35%), Gaps = 34/145 (23%)
Query: 3 HSRSCHPTMTILQAPTPA-------PSTIPGPRRGSGPEIF-------TFDPL--PEPAA 46
HS S P + PTPA P+ + R SGP+ T + L P PA+
Sbjct: 424 HSPSGDPKADKRRGPTPADRDRPSVPAPVQAGGRSSGPQRAGSLKREKTEERLGSPSPAS 483
Query: 47 APAGRPSASRGHRKRSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVP 106
RP S G R R + + +R P P+P K +P
Sbjct: 484 RTPARPFGSVGRRSRLAQDFMAQCLRESSPAARPSPEK----------------VPPVLP 527
Query: 107 APLPPEDAPNAASLAPTPVSAVLEP 131
APL P PTP A +P
Sbjct: 528 APLTPHGTSPVG--PPTPPPAPTDP 550
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 36.2 bits (82), Expect = 0.012
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 4 SRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSR 63
+R P L AP PST PG R G G PL A G A++G R R R
Sbjct: 177 ARGTDPPGRTLPAPLARPSTQPGRRPGLGR---AASPLGPRGAGVTGAGPATQGGRDRGR 233
Query: 64 RVLYPRVVRRQLPVEEP 80
+ R VRR++P P
Sbjct: 234 ---WGRWVRRRVPCPLP 247
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 36.2 bits (82), Expect = 0.012
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 4 SRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSR 63
+R P L AP PST PG R G G PL A G A++G R R R
Sbjct: 177 ARGTDPPGRTLPAPLARPSTQPGRRPGLGR---AASPLGPRGAGVTGAGPATQGGRDRGR 233
Query: 64 RVLYPRVVRRQLPVEEP 80
+ R VRR++P P
Sbjct: 234 ---WGRWVRRRVPCPLP 247
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 35.8 bits (81), Expect = 0.015
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 4 SRSCHPTM--TILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK 60
S C P T Q PT S PGP+R G PLP PA PA RP S ++
Sbjct: 306 SEDCPPFRAGTPPQQPTAPSSEWPGPQRSPGTGPRWTAPLPRPAPLPAKRPGDSPASKR 364
>gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
Length = 1292
Score = 35.8 bits (81), Expect = 0.015
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 15 QAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLY 67
QAP PAP +P P + P P P PA+ A PS+ G S+R+L+
Sbjct: 16 QAPAPAPEAVPAP--AAAPV-----PAPAPASDSASGPSSDSGPEAGSQRLLF 61
>gi|149944516 tet oncogene family member 3 [Homo sapiens]
Length = 1660
Score = 35.4 bits (80), Expect = 0.020
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 19 PAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRRQLPVE 78
P PS+ P PR P LP PA P G A+ G + R+ P +++ P E
Sbjct: 426 PPPSS-PVPRLPDRPPKEKKKKLPTPAGGPVGTEKAAPGIKPSVRK---PIQIKKSRPRE 481
Query: 79 EP---NPAKRLLFLLLTIVFCQ--------ILMAEEGVPAPLPPEDAPNAASLAPTPV-S 126
P ++++ L Q L A +G PLPPE P+ A AP+P
Sbjct: 482 AQPLFPPVRQIVLEGLRSPASQEVQAHPPAPLPASQGSAVPLPPE--PSLALFAPSPSRD 539
Query: 127 AVLEPFNLTSEPS 139
++L P PS
Sbjct: 540 SLLPPTQEMRSPS 552
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 35.0 bits (79), Expect = 0.026
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 20 APSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRR 73
AP P PRR GP + P P P A PA P++ +R RR +PR RR
Sbjct: 109 APPRHPRPRRPGGPAL---RPTPRPCAGPAPPPASRDCRCRRPRR--WPRAGRR 157
>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor
[Homo sapiens]
Length = 1233
Score = 34.7 bits (78), Expect = 0.034
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 19 PAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASR 56
P PS P PR G P + T DP PEP+ G P R
Sbjct: 930 PPPSPCPTPRSGPSPCLPTPDPPPEPSPTGWGPPDGGR 967
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.7 bits (78), Expect = 0.034
Identities = 41/153 (26%), Positives = 54/153 (35%), Gaps = 45/153 (29%)
Query: 9 PTMTILQAPTPAP-----------STIPGPRRGSGPEIFTFDPLP------EPAAAPAGR 51
PT T+L TPA T+P P++ P I T P E ++ PA
Sbjct: 1529 PTATLLSKKTPATLAPKEALIPPAMTVPSPKKT--PAIPTPKEAPATPSSKEASSPPAVT 1586
Query: 52 PSASRGHRKRSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPP 111
PS +G + +L P V P E P P PA PP
Sbjct: 1587 PSTYKG-APSPKELLIPPAVTSPSPKEAPTP-----------------------PAVTPP 1622
Query: 112 EDAPNAASLAP--TPVSAVLEPFNLTSEPSDYA 142
A+ AP TP S + P +L P+ A
Sbjct: 1623 SPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPA 1655
Score = 26.6 bits (57), Expect = 9.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 10 TMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAP 48
T ++ APTP +T P P+ G P+P PAA P
Sbjct: 1073 TPSLKGAPTPPAATPPSPKGGPATPSPKGAPMP-PAATP 1110
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 33.9 bits (76), Expect = 0.057
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 14 LQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRG 57
+ AP P P+ IPGP GS P P+P PA P+ P+ G
Sbjct: 99 IPAPIPGPAQIPGPLPGSIP-----GPIPGPAQIPSPIPAPIPG 137
Score = 30.4 bits (67), Expect = 0.64
Identities = 31/112 (27%), Positives = 37/112 (33%), Gaps = 22/112 (19%)
Query: 14 LQAPTPA--PSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVV 71
+ P P P IPGP G GP I P+P PA P G R+ P +
Sbjct: 243 ISGPNPGLIPGPIPGPISGPGPII---GPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSL 299
Query: 72 RRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLP-PEDAPNAASLAP 122
P+ P VPAP+P P P A L P
Sbjct: 300 PGLAPILGPGSGP----------------GSGSVPAPIPGPGSLPAPAPLWP 335
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 15 QAPTPAPSTIPGPRRGSGPEIFTF-DPLPEPAAAPAGRPSASRG 57
Q P+P P+ IPGP G F P+P P + PA P G
Sbjct: 126 QIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISG 169
Score = 27.7 bits (60), Expect = 4.1
Identities = 28/114 (24%), Positives = 37/114 (32%), Gaps = 27/114 (23%)
Query: 14 LQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRR 73
+ P P P I GP G P P+P P P P + S + P
Sbjct: 157 ISGPAPIPGPISGPFSGPNP-----GPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPI 211
Query: 74 QLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLP-PEDAPNAASLAPTPVS 126
P+ PNP +P P+P P PN + P P+S
Sbjct: 212 SGPISGPNPGP--------------------IPGPIPGPISGPNPGPI-PGPIS 244
Score = 27.7 bits (60), Expect = 4.1
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 17 PTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAP 48
P P P IPGP G P P+P P + P
Sbjct: 220 PGPIPGPIPGPISGPNP-----GPIPGPISGP 246
Score = 26.6 bits (57), Expect = 9.2
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 19 PAPSTIPGPRRGSGPEIFTFDPLPEPAAAP 48
P P IPGP G P + P+P P + P
Sbjct: 234 PNPGPIPGPISGPNPGLIP-GPIPGPISGP 262
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.075
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 24/79 (30%)
Query: 9 PTMTILQAPTPAPSTIP----------GPR-----RGSGPEIFTFDPLPEPAAAPA---- 49
P T AP P P+ P GPR RGSGP PLP PA +PA
Sbjct: 201 PQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
Query: 50 ----GR-PSASRGHRKRSR 63
GR P ++ G R R R
Sbjct: 261 ELREGRAPGSTAGRRPRPR 279
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.075
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 24/79 (30%)
Query: 9 PTMTILQAPTPAPSTIP----------GPR-----RGSGPEIFTFDPLPEPAAAPA---- 49
P T AP P P+ P GPR RGSGP PLP PA +PA
Sbjct: 201 PQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
Query: 50 ----GR-PSASRGHRKRSR 63
GR P ++ G R R R
Sbjct: 261 ELREGRAPGSTAGRRPRPR 279
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.075
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 24/79 (30%)
Query: 9 PTMTILQAPTPAPSTIP----------GPR-----RGSGPEIFTFDPLPEPAAAPA---- 49
P T AP P P+ P GPR RGSGP PLP PA +PA
Sbjct: 201 PQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
Query: 50 ----GR-PSASRGHRKRSR 63
GR P ++ G R R R
Sbjct: 261 ELREGRAPGSTAGRRPRPR 279
>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
sapiens]
Length = 1065
Score = 33.5 bits (75), Expect = 0.075
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 6 SCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAA-----------APAGRPSA 54
S P I Q P P P P PR + P + + P P++ P+ R
Sbjct: 786 SAGPQRRIDQPPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLASASPDWVGPSTRLRQ 845
Query: 55 SRGHRKRSRRVLYPRVVRRQLPVE-EPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPP 111
K L PR V +Q P PN R LLT+ L+ +EG+ P PP
Sbjct: 846 QSSSSKGDSPELKPRAVHKQGPSPVSPNALDRTAAWLLTM--NAQLLEDEGL-GPDPP 900
>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
sapiens]
Length = 1132
Score = 33.5 bits (75), Expect = 0.075
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 6 SCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAA-----------APAGRPSA 54
S P I Q P P P P PR + P + + P P++ P+ R
Sbjct: 882 SAGPQRRIDQPPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLASASPDWVGPSTRLRQ 941
Query: 55 SRGHRKRSRRVLYPRVVRRQLPVE-EPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPP 111
K L PR V +Q P PN R LLT+ L+ +EG+ P PP
Sbjct: 942 QSSSSKGDSPELKPRAVHKQGPSPVSPNALDRTAAWLLTM--NAQLLEDEGL-GPDPP 996
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 33.5 bits (75), Expect = 0.075
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 16 APTPAPSTIP-----GPRRGSGPEIFTFDPLPEPAAAPAGRPSA 54
+P PAP+ P GPR G GPE +P P P +PA P A
Sbjct: 901 SPAPAPAASPQPGSRGPRDGLGPE--PQEPPPGPPPSPAAAPEA 942
Score = 28.9 bits (63), Expect = 1.8
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 35/143 (24%)
Query: 2 CHSR-SCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK 60
C+ R S H T T+ + A P PRR + P P PAA PA PS + R
Sbjct: 688 CNIRFSRHETYTVHKRYYCASRHDPPPRRPAAPP-----GPPGPAAPPA--PSPAAPVRT 740
Query: 61 RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAAS- 119
R RR LY P P A PAP P + S
Sbjct: 741 RRRRKLYELHAAGAPPPPPPGHA----------------------PAPESPRPGSGSGSG 778
Query: 120 --LAP--TPVSAVLEPFNLTSEP 138
LAP +P A P +L+ +P
Sbjct: 779 PGLAPARSPGPAADGPIDLSKKP 801
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 33.1 bits (74), Expect = 0.098
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 17 PTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSAS--RGHRKRSRRV 65
P+P+PS +P P GP P PAAA A P A+ G R+ SR V
Sbjct: 273 PSPSPSPVPAPAPPPGP--------PRPAAAAATAPLANGRAGKRRPSRLV 315
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.1 bits (74), Expect = 0.098
Identities = 41/148 (27%), Positives = 54/148 (36%), Gaps = 35/148 (23%)
Query: 4 SRSCHPTMTILQAPTPAPSTI-PGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRS 62
+R T T+L P P PS + P P GP P P PAA PAG + R + R
Sbjct: 315 ARLLRRTETLLPGPRPCPSPLPPPPAPPKGP------PAP-PAATPAGVYTVFR-EQGRE 366
Query: 63 RRVLYPRVV-------RRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPL------ 109
RV+ P V R P++ + A+ +L A G P PL
Sbjct: 367 HRVVAPTFVPSVEAFDERPGPIQIASQARDARAREREAGRPGVLQAPPGSPRPLDRPEGL 426
Query: 110 -------------PPEDAPNAASLAPTP 124
PP DAP + +P
Sbjct: 427 REKNSVIRSLKRPPPADAPTVRATRASP 454
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 33.1 bits (74), Expect = 0.098
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 14 LQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVR 72
L AP P P+ P P P P PA RP A RG R+RSR P+ R
Sbjct: 120 LSAPPPPPARPPPP--------------PPPPPPPAPRPRAWRGSRRRSRPGSRPQTRR 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,325,667
Number of Sequences: 37866
Number of extensions: 559865
Number of successful extensions: 4763
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 3915
Number of HSP's gapped (non-prelim): 1014
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.