Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 119964690

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|119964690 glycogenin 2 isoform b [Homo sapiens]
         (501 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|119964690 glycogenin 2 isoform b [Homo sapiens]                   1016   0.0  
gi|119943093 glycogenin 2 isoform a [Homo sapiens]                    955   0.0  
gi|20127457 glycogenin 1 [Homo sapiens]                               370   e-102
gi|62243734 signal transducing adaptor family member 2 isoform 1...    48   2e-05
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [...    47   5e-05
gi|29029530 sulfotransferase family, cytosolic, 1C, member 1 iso...    46   9e-05
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]        45   1e-04
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ...    44   3e-04
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]                     44   3e-04
gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens]          43   8e-04
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]                     42   0.001
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]                     42   0.001
gi|28212280 hypothetical protein LOC283579 [Homo sapiens]              42   0.001
gi|224494572 hypothetical protein LOC401082 [Homo sapiens]             42   0.001
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]          42   0.002
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]          42   0.002
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi...    41   0.002
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H...    40   0.004
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap...    40   0.004
gi|50345997 E1A binding protein p300 [Homo sapiens]                    39   0.014
gi|62000702 diacylglycerol kinase kappa [Homo sapiens]                 39   0.014
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi...    38   0.025
gi|211971058 G protein-coupled receptor 107 isoform 1 [Homo sapi...    38   0.025
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap...    37   0.032
gi|4503509 eukaryotic translation initiation factor 3, subunit 1...    37   0.042
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]            37   0.042
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]            37   0.042
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]            37   0.042
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]               37   0.055
gi|191252814 RIMS binding protein 3B [Homo sapiens]                    36   0.071

>gi|119964690 glycogenin 2 isoform b [Homo sapiens]
          Length = 501

 Score = 1016 bits (2626), Expect = 0.0
 Identities = 501/501 (100%), Positives = 501/501 (100%)

Query: 1   MSETEFHHGAQAGLELLRSSNSPTSASQSAGMTVTDQAFVTLATNDIYCQGALVLGQSLR 60
           MSETEFHHGAQAGLELLRSSNSPTSASQSAGMTVTDQAFVTLATNDIYCQGALVLGQSLR
Sbjct: 1   MSETEFHHGAQAGLELLRSSNSPTSASQSAGMTVTDQAFVTLATNDIYCQGALVLGQSLR 60

Query: 61  RHRLTRKLVVLITPQVSSLLRVILSKVFDEVIEVNLIDSADYIHLAFLKRPELGLTLTKL 120
           RHRLTRKLVVLITPQVSSLLRVILSKVFDEVIEVNLIDSADYIHLAFLKRPELGLTLTKL
Sbjct: 61  RHRLTRKLVVLITPQVSSLLRVILSKVFDEVIEVNLIDSADYIHLAFLKRPELGLTLTKL 120

Query: 121 HCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNSGVFVFQPSLHTHK 180
           HCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNSGVFVFQPSLHTHK
Sbjct: 121 HCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNSGVFVFQPSLHTHK 180

Query: 181 LLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYNLSSNTMYTYSPAFKQFGSS 240
           LLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYNLSSNTMYTYSPAFKQFGSS
Sbjct: 181 LLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYNLSSNTMYTYSPAFKQFGSS 240

Query: 241 AKVVHFLGSMKPWNYKYNPQSGSVLEQGSASSSQHQAAFLHLWWTVYQNNVLPLYKSVQA 300
           AKVVHFLGSMKPWNYKYNPQSGSVLEQGSASSSQHQAAFLHLWWTVYQNNVLPLYKSVQA
Sbjct: 241 AKVVHFLGSMKPWNYKYNPQSGSVLEQGSASSSQHQAAFLHLWWTVYQNNVLPLYKSVQA 300

Query: 301 GEARASPGHTLCHSDVGGPCADSASGVGEPCENSTPSAGVPCANSPLGSNQPAQGLPEPT 360
           GEARASPGHTLCHSDVGGPCADSASGVGEPCENSTPSAGVPCANSPLGSNQPAQGLPEPT
Sbjct: 301 GEARASPGHTLCHSDVGGPCADSASGVGEPCENSTPSAGVPCANSPLGSNQPAQGLPEPT 360

Query: 361 QIVDETLSLPEGRRSEDMIACPETETPAVITCDPLSQPSPQPADFTETETILQPANKVES 420
           QIVDETLSLPEGRRSEDMIACPETETPAVITCDPLSQPSPQPADFTETETILQPANKVES
Sbjct: 361 QIVDETLSLPEGRRSEDMIACPETETPAVITCDPLSQPSPQPADFTETETILQPANKVES 420

Query: 421 VSSEETFEPSQELPAEALRDPSLQDALEVDLAVSVSQISIEEKVKELSPEEERRKWEEGR 480
           VSSEETFEPSQELPAEALRDPSLQDALEVDLAVSVSQISIEEKVKELSPEEERRKWEEGR
Sbjct: 421 VSSEETFEPSQELPAEALRDPSLQDALEVDLAVSVSQISIEEKVKELSPEEERRKWEEGR 480

Query: 481 IDYMGKDAFARIQEKLDRFLQ 501
           IDYMGKDAFARIQEKLDRFLQ
Sbjct: 481 IDYMGKDAFARIQEKLDRFLQ 501


>gi|119943093 glycogenin 2 isoform a [Homo sapiens]
          Length = 470

 Score =  955 bits (2468), Expect = 0.0
 Identities = 469/470 (99%), Positives = 470/470 (100%)

Query: 32  MTVTDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEV 91
           M+VTDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEV
Sbjct: 1   MSVTDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEV 60

Query: 92  IEVNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRG 151
           IEVNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRG
Sbjct: 61  IEVNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRG 120

Query: 152 EFSAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTD 211
           EFSAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTD
Sbjct: 121 EFSAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTD 180

Query: 212 IHKHLPFIYNLSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSAS 271
           IHKHLPFIYNLSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSAS
Sbjct: 181 IHKHLPFIYNLSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSAS 240

Query: 272 SSQHQAAFLHLWWTVYQNNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSASGVGEPC 331
           SSQHQAAFLHLWWTVYQNNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSASGVGEPC
Sbjct: 241 SSQHQAAFLHLWWTVYQNNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSASGVGEPC 300

Query: 332 ENSTPSAGVPCANSPLGSNQPAQGLPEPTQIVDETLSLPEGRRSEDMIACPETETPAVIT 391
           ENSTPSAGVPCANSPLGSNQPAQGLPEPTQIVDETLSLPEGRRSEDMIACPETETPAVIT
Sbjct: 301 ENSTPSAGVPCANSPLGSNQPAQGLPEPTQIVDETLSLPEGRRSEDMIACPETETPAVIT 360

Query: 392 CDPLSQPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAEALRDPSLQDALEVDL 451
           CDPLSQPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAEALRDPSLQDALEVDL
Sbjct: 361 CDPLSQPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAEALRDPSLQDALEVDL 420

Query: 452 AVSVSQISIEEKVKELSPEEERRKWEEGRIDYMGKDAFARIQEKLDRFLQ 501
           AVSVSQISIEEKVKELSPEEERRKWEEGRIDYMGKDAFARIQEKLDRFLQ
Sbjct: 421 AVSVSQISIEEKVKELSPEEERRKWEEGRIDYMGKDAFARIQEKLDRFLQ 470


>gi|20127457 glycogenin 1 [Homo sapiens]
          Length = 350

 Score =  370 bits (950), Expect = e-102
 Identities = 174/261 (66%), Positives = 210/261 (80%), Gaps = 1/261 (0%)

Query: 34  VTDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEVIE 93
           +TDQAFVTL TND Y +GALVLG SL++HR TR+LVVL TPQVS  +R +L  VFDEVI 
Sbjct: 1   MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 60

Query: 94  VNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEF 153
           V+++DS D  HL  +KRPELG+TLTKLHCW+LT YSKCVF+DADTLVL+N+D+LFDR E 
Sbjct: 61  VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREEL 120

Query: 154 SAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIH 213
           SAAPDPGWPDCFNSGVFV+QPS+ T+  LL  A E GSFDG DQG+LN+FF +W+TTDI 
Sbjct: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIR 180

Query: 214 KHLPFIYNLSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSASSS 273
           KHLPFIYNLSS ++Y+Y PAFK FG+SAKVVHFLG +KPWNY Y+P++ SV  +    + 
Sbjct: 181 KHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNM 240

Query: 274 QHQAAFLHLWWTVYQNNVLPL 294
            H   FL LWW ++  NVLPL
Sbjct: 241 TH-PEFLILWWNIFTTNVLPL 260



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 450 DLAVSVSQISIEEKVKELSP----EEERRKWEEGRIDYMGKDAFARIQEKLDRFLQ 501
           D++ ++S +S+ E      P    EE + +WE+G+ DYMG D+F  I+ KLD +LQ
Sbjct: 295 DVSGAISHLSLGEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYLQ 350


>gi|62243734 signal transducing adaptor family member 2 isoform 1
           [Homo sapiens]
          Length = 449

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 24/31 (77%), Positives = 26/31 (83%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMT 33
           E  FHH AQAGLELL SS+ PTSASQSAG+T
Sbjct: 359 EKGFHHVAQAGLELLTSSDPPTSASQSAGIT 389


>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
          [Homo sapiens]
          Length = 759

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 28/51 (54%), Positives = 32/51 (62%), Gaps = 11/51 (21%)

Query: 3  ETEFHHGAQAGLELLRSSNSPTSASQSAGMT-----------VTDQAFVTL 42
          E  FHH  QAGLELL SS+ PTSASQSAG+T            T Q+FVT+
Sbjct: 38 EMGFHHVGQAGLELLISSDLPTSASQSAGITDMKLSMKNNIINTQQSFVTM 88


>gi|29029530 sulfotransferase family, cytosolic, 1C, member 1
           isoform b [Homo sapiens]
          Length = 307

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 23/32 (71%), Positives = 25/32 (78%)

Query: 2   SETEFHHGAQAGLELLRSSNSPTSASQSAGMT 33
           SET FHH AQAGL+LL SSN P S SQSA +T
Sbjct: 92  SETGFHHVAQAGLKLLSSSNPPASTSQSAKIT 123


>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
          Length = 558

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/33 (66%), Positives = 26/33 (78%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMTVT 35
           ET FHH +QAGLELL S + PT ASQSAG+T +
Sbjct: 237 ETVFHHVSQAGLELLTSGDLPTLASQSAGITAS 269



 Score = 30.0 bits (66), Expect = 5.1
 Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 21/186 (11%)

Query: 289 NNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSAS---GVGEPCENSTPSAGVPCANS 345
           N +L   K+   G +  SPG T     V GP   + +   G G P            A++
Sbjct: 72  NEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGNPTTTIESPKSTKSADT 131

Query: 346 PLGSNQPAQGLPEPTQI---VDETLSLPEGRRSEDMIACPETETPAVITCDPLSQPSPQP 402
              +   A   P  T      ++T +   G +S   +    T T A     P       P
Sbjct: 132 TTVATSTATAKPNTTSSQNGAEDTTN--SGGKSSHSVTTDLTSTKAEHLTTPHPTSPLSP 189

Query: 403 ADFTETETILQPAN-------KVESVSSEETFEPSQELPAEALRDPSLQDALEVDLAVSV 455
              T T  +  P +       K+ S SS      +  +P      P +   L   +   V
Sbjct: 190 RQPTSTHPVATPTSSGHDHLMKISSSSS------TVAIPGYTFTSPGMTTTLLETVFHHV 243

Query: 456 SQISIE 461
           SQ  +E
Sbjct: 244 SQAGLE 249


>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
           sapiens]
          Length = 402

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMT-VTDQAFVTLATNDIYC 49
           ET F H  QAGLELL S + PTSASQSAG+T VT  A   L    ++C
Sbjct: 355 ETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402


>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMT-VTDQAFVTLATNDIYC 49
           ET F H  QAGLELL S + PTSASQSAG+T VT  A   L    ++C
Sbjct: 355 ETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402


>gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens]
          Length = 176

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 21/29 (72%), Positives = 23/29 (79%)

Query: 5  EFHHGAQAGLELLRSSNSPTSASQSAGMT 33
          EFH+ AQA LELL SSN P SASQS G+T
Sbjct: 2  EFHYVAQADLELLTSSNPPASASQSTGIT 30


>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMT-VTDQAFVTLATNDIYC 49
           ET F H  QAGLELL S + PTSASQSAG+T V+  A   L    ++C
Sbjct: 355 ETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402


>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMT-VTDQAFVTLATNDIYC 49
           ET F H  QAGLELL S + PTSASQSAG+T V+  A   L    ++C
Sbjct: 355 ETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402


>gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
          Length = 122

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 7  HHGAQAGLELLRSSNSPTSASQSAGMT 33
          H+ AQAGLELL SSN P SASQSAG+T
Sbjct: 34 HYFAQAGLELLGSSNPPASASQSAGIT 60


>gi|224494572 hypothetical protein LOC401082 [Homo sapiens]
          Length = 95

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 7  HHGAQAGLELLRSSNSPTSASQSAGMT 33
          H+ AQAGLELL SSNSPTSA Q+AG T
Sbjct: 18 HYVAQAGLELLGSSNSPTSAYQAAGTT 44


>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
          Length = 606

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/31 (67%), Positives = 23/31 (74%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMT 33
           E  FHH  QA LELL SS+ P SASQSAG+T
Sbjct: 76  EMGFHHATQACLELLGSSDLPASASQSAGIT 106


>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
          Length = 629

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/31 (67%), Positives = 23/31 (74%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMT 33
           E  FHH  QA LELL SS+ P SASQSAG+T
Sbjct: 76  EMGFHHATQACLELLGSSDLPASASQSAGIT 106


>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
           sapiens]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/30 (66%), Positives = 22/30 (73%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGM 32
           ET FHH A AGLELL S + PTS SQS G+
Sbjct: 411 ETGFHHVAHAGLELLISRDPPTSGSQSVGL 440


>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
           sapiens]
          Length = 619

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMTV 34
           ET F H  Q GLELL S + PT ASQSAG+TV
Sbjct: 309 ETGFRHVDQDGLELLTSGDPPTLASQSAGITV 340


>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
           sapiens]
          Length = 365

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/37 (56%), Positives = 24/37 (64%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGMTVTDQAF 39
           ET FH   QAGL+LL SS+ P   SQSAG+T  D  F
Sbjct: 111 ETGFHRVGQAGLQLLTSSDPPALDSQSAGITGADANF 147


>gi|50345997 E1A binding protein p300 [Homo sapiens]
          Length = 2414

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 8/149 (5%)

Query: 329  EPCENSTPSAGVPCANSPLGSNQPAQGLPEPTQIVDETLSLPEGRRSEDM--IACPETET 386
            +P    + +A VP   +PL   QPA  L +P   ++  +S P    S ++   A  E + 
Sbjct: 913  QPRSQQSTAASVPTPTAPLLPPQPATPLSQPAVSIEGQVSNPPSTSSTEVNSQAIAEKQP 972

Query: 387  PAVITCD-PLSQPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAEALRDPSLQD 445
               +  +  +    P+PAD T+ E I +   +   + S ET E S EL  E +++   Q 
Sbjct: 973  SQEVKMEAKMEVDQPEPAD-TQPEDISESKVEDCKMESTETEERSTELKTE-IKEEEDQP 1030

Query: 446  ALEVDLAVSVSQISIEEKVKELSPEEERR 474
            +     A   S    + K K   PEE R+
Sbjct: 1031 STS---ATQSSPAPGQSKKKIFKPEELRQ 1056



 Score = 33.9 bits (76), Expect = 0.35
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 26/110 (23%)

Query: 380  ACPETE-TPAVITCDPLSQPSPQPADFTE----------TETILQPANKVESVSSEETFE 428
            ACP +E    +  C P  Q  P+P    E          +E I+     +   ++E+   
Sbjct: 1437 ACPPSEGDDYIFHCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHDYKDIFKQATEDRLT 1496

Query: 429  PSQELPAEALRDPSLQDALEVDLAVSVSQISIEEKVKELSPEEERRKWEE 478
             ++ELP             E D   +V    +EE +KEL  EEE RK EE
Sbjct: 1497 SAKELPY-----------FEGDFWPNV----LEESIKELEQEEEERKREE 1531


>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
          Length = 1271

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 12/151 (7%)

Query: 321 ADSASGVGEPCENSTPSAGVPCANSPLGSNQPAQGLPEPTQIVDETLSLPEGRRSEDMIA 380
           A +A G   P +   P+   P    P     P    P    ++ E    P      ++  
Sbjct: 5   AAAAQGTAPPQDGEQPAES-PEPPPPWPPPPPPPAPPPAPPLLSEASPEPIPEPCPELAP 63

Query: 381 CPETETPAVITCDPLSQPSPQPADFTETETILQPANK-VESVSSEETFEPSQELPAEALR 439
            P  E  +    +  ++P+P+PA    +E   +PA +     ++E   EP+ E   E+  
Sbjct: 64  GPCPEATSESATELYTEPTPEPATEPASEPAPEPATEPAPEPATEPAPEPAPEPATESAP 123

Query: 440 DPSLQDALEVDLAVSVSQISIEEKVKELSPE 470
           +P+ + ALE          S+ E   EL+PE
Sbjct: 124 EPTPEPALE----------SVPEPAPELTPE 144



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 13/127 (10%)

Query: 323 SASGVGEPCENSTPSAGVPCANSPLGSNQPAQGLPEPTQIVDETLSLPEGRRSEDMIACP 382
           S   + EPC    P    PC   P  +++ A      T++  E    P    + +    P
Sbjct: 50  SPEPIPEPCPELAPG---PC---PEATSESA------TELYTEPTPEPATEPASEPAPEP 97

Query: 383 ETETPAVITCDPLSQPSPQPADFTETETILQPA-NKVESVSSEETFEPSQELPAEALRDP 441
            TE       +P  +P+P+PA  +  E   +PA   V   + E T E + EL  E   +P
Sbjct: 98  ATEPAPEPATEPAPEPAPEPATESAPEPTPEPALESVPEPAPELTPEVAPELAPEPTPEP 157

Query: 442 SLQDALE 448
             + A E
Sbjct: 158 VTELAPE 164


>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
           sapiens]
          Length = 167

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 19/24 (79%), Positives = 21/24 (87%)

Query: 10  AQAGLELLRSSNSPTSASQSAGMT 33
           AQAGLELL SS+ P SASQSAG+T
Sbjct: 129 AQAGLELLASSDLPASASQSAGIT 152


>gi|211971058 G protein-coupled receptor 107 isoform 1 [Homo
           sapiens]
          Length = 600

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 2   SETEFHHGAQAGLELLRSSNSPTSASQSAGMT 33
           S  E HH AQA LELL SS  P S SQ AG+T
Sbjct: 452 SRIESHHFAQADLELLASSCPPASVSQRAGIT 483


>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
          Length = 1079

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 3    ETEFHHGAQAGLELLRSSNSPTSASQSAGMT 33
            ET FHH  QA LELL S     SASQSAG+T
Sbjct: 1042 ETGFHHVGQACLELLTSGGLLASASQSAGIT 1072


>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
           theta, 150/170kDa [Homo sapiens]
          Length = 1382

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 401 QPADFTETETILQPANKVESVSSEETFEPSQ--ELPAEALRDPSLQDALEVDLAVSVSQI 458
           Q A   E E ILQ   +++  +  E  E  +  EL A+A +D  ++D  E+D    +++ 
Sbjct: 614 QEAKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFIMAK- 672

Query: 459 SIEEKVKELSPEEERRKWEEGRIDY 483
            +E+  KE    +ER K +E +IDY
Sbjct: 673 QVEQLEKEKKELQERLKNQEKKIDY 697


>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 142

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 7  HHGAQAGLELLRSSNSPTSASQSAGMT 33
          +H  QAGLELL SS+ PTSASQ+A +T
Sbjct: 4  YHVGQAGLELLTSSDPPTSASQNAEIT 30


>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 142

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 7  HHGAQAGLELLRSSNSPTSASQSAGMT 33
          +H  QAGLELL SS+ PTSASQ+A +T
Sbjct: 4  YHVGQAGLELLTSSDPPTSASQNAEIT 30


>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 142

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 7  HHGAQAGLELLRSSNSPTSASQSAGMT 33
          +H  QAGLELL SS+ PTSASQ+A +T
Sbjct: 4  YHVGQAGLELLTSSDPPTSASQNAEIT 30


>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
          Length = 586

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query: 3   ETEFHHGAQAGLELLRSSNSPTSASQSAGM 32
           ETE  H  Q+ LELL SS+ P SASQSAG+
Sbjct: 107 ETESGHVTQSDLELLLSSDPPASASQSAGI 136


>gi|191252814 RIMS binding protein 3B [Homo sapiens]
          Length = 1639

 Score = 36.2 bits (82), Expect = 0.071
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 15/102 (14%)

Query: 342 CANSPLGS-NQPAQGL----PEPTQIVDETLSLPEGRRSEDMIACPETETPAVITCDPLS 396
           C++SP G  +  A  L    P  ++ +D T SLP+  +SE+  + P+T TP      P  
Sbjct: 270 CSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPP 329

Query: 397 QPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAEAL 438
            P P P           P +    +S+    E S+  P E L
Sbjct: 330 SPLPPP----------PPPSAHRKLSNPRGGEGSESQPCEVL 361


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,224,557
Number of Sequences: 37866
Number of extensions: 1052096
Number of successful extensions: 4438
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 4236
Number of HSP's gapped (non-prelim): 367
length of query: 501
length of database: 18,247,518
effective HSP length: 106
effective length of query: 395
effective length of database: 14,233,722
effective search space: 5622320190
effective search space used: 5622320190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press