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Search of human proteins with 239756862
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756862 PREDICTED: hypothetical protein [Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756862 PREDICTED: hypothetical protein [Homo sapiens] 330 3e-91
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 36 0.012
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 36 0.012
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 36 0.012
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 36 0.012
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 36 0.012
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 36 0.012
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 35 0.027
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 35 0.027
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 35 0.027
gi|27544941 myosin IF [Homo sapiens] 34 0.047
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.080
gi|239757603 PREDICTED: hypothetical protein [Homo sapiens] 33 0.10
gi|239752105 PREDICTED: hypothetical protein [Homo sapiens] 33 0.10
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 32 0.18
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo ... 32 0.23
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 32 0.23
gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo ... 32 0.23
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 32 0.23
gi|51944974 tumor suppressor candidate 1 [Homo sapiens] 32 0.30
gi|5803177 basic beta 2 syntrophin [Homo sapiens] 32 0.30
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 31 0.40
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 31 0.40
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 30 0.68
gi|239753497 PREDICTED: hypothetical protein [Homo sapiens] 30 0.68
gi|7657615 podocin [Homo sapiens] 30 0.88
gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens] 30 0.88
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 29 1.5
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 29 1.5
>gi|239756862 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 330 bits (846), Expect = 3e-91
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MAEAPRSTTIGRCPGHAESLTGQALSVEGPSRAHSPAGFKARVGWAGSGMERADWPRGGR 60
MAEAPRSTTIGRCPGHAESLTGQALSVEGPSRAHSPAGFKARVGWAGSGMERADWPRGGR
Sbjct: 1 MAEAPRSTTIGRCPGHAESLTGQALSVEGPSRAHSPAGFKARVGWAGSGMERADWPRGGR 60
Query: 61 LGWGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIVGVDRIGCPGELRRGV 120
LGWGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIVGVDRIGCPGELRRGV
Sbjct: 61 LGWGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIVGVDRIGCPGELRRGV 120
Query: 121 RGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAGAAVG 160
RGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAGAAVG
Sbjct: 121 RGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAGAAVG 160
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 36.2 bits (82), Expect = 0.012
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 35 SPAGFKARVGWAGSGM----ERADWPRGGRLGWGR---REPAVDWVGLVKALSSDRLSAG 87
S AG VG A G + RG LG GR R+P +GL L + R++
Sbjct: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP--LGL---LVNPRVAGV 122
Query: 88 RRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRREVPGNPRSPARGTMGRPRE 147
+DR DPA + ++G+ +G G RR + G+ G G ARG G
Sbjct: 123 DGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
Query: 148 EAELGSSAGAAV 159
+ + GAAV
Sbjct: 183 AGQHRARLGAAV 194
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 36.2 bits (82), Expect = 0.012
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 35 SPAGFKARVGWAGSGM----ERADWPRGGRLGWGR---REPAVDWVGLVKALSSDRLSAG 87
S AG VG A G + RG LG GR R+P +GL L + R++
Sbjct: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP--LGL---LVNPRVAGV 122
Query: 88 RRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRREVPGNPRSPARGTMGRPRE 147
+DR DPA + ++G+ +G G RR + G+ G G ARG G
Sbjct: 123 DGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
Query: 148 EAELGSSAGAAV 159
+ + GAAV
Sbjct: 183 AGQHRARLGAAV 194
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 36.2 bits (82), Expect = 0.012
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 29 GPSRAHSPAGFKARVGWAGS-GMERADWPRGGRLGWGRREPAVDWVGLVKALSSDRLSAG 87
G S H G G G+ G E D PRG G+ P + + + R + G
Sbjct: 762 GNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDP---GQPGPPGEQGPPGRCIEGPRGAQG 818
Query: 88 R--------RVDRRHDSDPARLAGIVGVDRIGCPGEL-RRGVRGRGA-----GRREVPGN 133
+ RR + P GI G+DR G PGE G+ G G+R PGN
Sbjct: 819 LPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGN 878
Query: 134 PRSPARGTMGRPREEAELG 152
P G +G P E+ +G
Sbjct: 879 P-----GILGPPGEDGVIG 892
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 36.2 bits (82), Expect = 0.012
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 29 GPSRAHSPAGFKARVGWAGS-GMERADWPRGGRLGWGRREPAVDWVGLVKALSSDRLSAG 87
G S H G G G+ G E D PRG G+ P + + + R + G
Sbjct: 762 GNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDP---GQPGPPGEQGPPGRCIEGPRGAQG 818
Query: 88 R--------RVDRRHDSDPARLAGIVGVDRIGCPGEL-RRGVRGRGA-----GRREVPGN 133
+ RR + P GI G+DR G PGE G+ G G+R PGN
Sbjct: 819 LPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGN 878
Query: 134 PRSPARGTMGRPREEAELG 152
P G +G P E+ +G
Sbjct: 879 P-----GILGPPGEDGVIG 892
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 36.2 bits (82), Expect = 0.012
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 29 GPSRAHSPAGFKARVGWAGS-GMERADWPRGGRLGWGRREPAVDWVGLVKALSSDRLSAG 87
G S H G G G+ G E D PRG G+ P + + + R + G
Sbjct: 762 GNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDP---GQPGPPGEQGPPGRCIEGPRGAQG 818
Query: 88 R--------RVDRRHDSDPARLAGIVGVDRIGCPGEL-RRGVRGRGA-----GRREVPGN 133
+ RR + P GI G+DR G PGE G+ G G+R PGN
Sbjct: 819 LPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGN 878
Query: 134 PRSPARGTMGRPREEAELG 152
P G +G P E+ +G
Sbjct: 879 P-----GILGPPGEDGVIG 892
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 36.2 bits (82), Expect = 0.012
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 29 GPSRAHSPAGFKARVGWAGS-GMERADWPRGGRLGWGRREPAVDWVGLVKALSSDRLSAG 87
G S H G G G+ G E D PRG G+ P + + + R + G
Sbjct: 762 GNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDP---GQPGPPGEQGPPGRCIEGPRGAQG 818
Query: 88 R--------RVDRRHDSDPARLAGIVGVDRIGCPGEL-RRGVRGRGA-----GRREVPGN 133
+ RR + P GI G+DR G PGE G+ G G+R PGN
Sbjct: 819 LPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGN 878
Query: 134 PRSPARGTMGRPREEAELG 152
P G +G P E+ +G
Sbjct: 879 P-----GILGPPGEDGVIG 892
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.027
Identities = 44/153 (28%), Positives = 56/153 (36%), Gaps = 29/153 (18%)
Query: 4 APRSTTIGRCPGHAESLTGQ--------ALSV----EGPSRAHSPAGFKARVGWAGSGME 51
+P +TT G C + TG AL V EGP PAG + G+AGS
Sbjct: 142 SPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQ---GFAGSFCA 198
Query: 52 RADWPRGGRLGWGRREP---------AVDWVGLVKALSSDRLSAGRR---VDRRHDSDPA 99
RG +GWG+ EP VD L + L + +GRR H D
Sbjct: 199 EGS-RRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGI 257
Query: 100 RLAGIVGVDRIGCPGELRRGVRGRGAGRREVPG 132
R CPG + G G+ PG
Sbjct: 258 RFRDCHCAPS-ACPGPTQDPQAGLCTGQEGYPG 289
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.027
Identities = 44/153 (28%), Positives = 56/153 (36%), Gaps = 29/153 (18%)
Query: 4 APRSTTIGRCPGHAESLTGQ--------ALSV----EGPSRAHSPAGFKARVGWAGSGME 51
+P +TT G C + TG AL V EGP PAG + G+AGS
Sbjct: 142 SPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQ---GFAGSFCA 198
Query: 52 RADWPRGGRLGWGRREP---------AVDWVGLVKALSSDRLSAGRR---VDRRHDSDPA 99
RG +GWG+ EP VD L + L + +GRR H D
Sbjct: 199 EGS-RRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGI 257
Query: 100 RLAGIVGVDRIGCPGELRRGVRGRGAGRREVPG 132
R CPG + G G+ PG
Sbjct: 258 RFRDCHCAPS-ACPGPTQDPQAGLCTGQEGYPG 289
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.027
Identities = 44/153 (28%), Positives = 56/153 (36%), Gaps = 29/153 (18%)
Query: 4 APRSTTIGRCPGHAESLTGQ--------ALSV----EGPSRAHSPAGFKARVGWAGSGME 51
+P +TT G C + TG AL V EGP PAG + G+AGS
Sbjct: 142 SPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQ---GFAGSFCA 198
Query: 52 RADWPRGGRLGWGRREP---------AVDWVGLVKALSSDRLSAGRR---VDRRHDSDPA 99
RG +GWG+ EP VD L + L + +GRR H D
Sbjct: 199 EGS-RRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGI 257
Query: 100 RLAGIVGVDRIGCPGELRRGVRGRGAGRREVPG 132
R CPG + G G+ PG
Sbjct: 258 RFRDCHCAPS-ACPGPTQDPQAGLCTGQEGYPG 289
>gi|27544941 myosin IF [Homo sapiens]
Length = 1098
Score = 34.3 bits (77), Expect = 0.047
Identities = 35/114 (30%), Positives = 40/114 (35%), Gaps = 11/114 (9%)
Query: 44 GWAGSGMERADWPRG-GRLG----WGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDP 98
GW G G + RG G L GR GL K+ R + RR P
Sbjct: 883 GWGGGGTRSVTFSRGFGDLAVLKVGGRTLTVSVGDGLPKSSKPTRKGMAKGKPRRSSQAP 942
Query: 99 ARLAGIV--GVDRIGCPGELRRGVRG----RGAGRREVPGNPRSPARGTMGRPR 146
R A G+DR G P R G G G P P S + G RPR
Sbjct: 943 TRAAPAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHRPPRGPPSTSLGASRRPR 996
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.5 bits (75), Expect = 0.080
Identities = 38/145 (26%), Positives = 56/145 (38%), Gaps = 31/145 (21%)
Query: 28 EGPSRAHSPAGFKARVGWAGSGMERADWPRG--GRLGWGRREPAVDWVGLVKALSSDRLS 85
EGP AG R G G++ PRG GR G ++ + L
Sbjct: 1402 EGPKGKQGKAGAPGRRGV--QGLQGLPGPRGVVGRQG-------LEGIAGPDGLPGRDGQ 1452
Query: 86 AGRRVDRRHDSDPARL-----------AGIVGVD-------RIGCPGELRRGVRGRGAGR 127
AG++ ++ D DP + AG+ G G PG+L + GR
Sbjct: 1453 AGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGR 1512
Query: 128 REVPGNPRSPARGTMGRPREEAELG 152
+PGN P G+ G+P + E+G
Sbjct: 1513 TGLPGNQGEP--GSKGQPGDSGEMG 1535
>gi|239757603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 33.1 bits (74), Expect = 0.10
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 61 LGWGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIVGV-DRIGCPGELRRG 119
+G R P +K + R + GR D + AR VG R PG R G
Sbjct: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPG--RAG 58
Query: 120 VRGRGAGRREVPGNPRSP 137
+GAGRR PG PR P
Sbjct: 59 REPKGAGRRRRPGAPRGP 76
>gi|239752105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 33.1 bits (74), Expect = 0.10
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 61 LGWGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIVGV-DRIGCPGELRRG 119
+G R P +K + R + GR D + AR VG R PG R G
Sbjct: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPG--RAG 58
Query: 120 VRGRGAGRREVPGNPRSP 137
+GAGRR PG PR P
Sbjct: 59 REPKGAGRRRRPGAPRGP 76
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.18
Identities = 51/173 (29%), Positives = 57/173 (32%), Gaps = 33/173 (19%)
Query: 4 APRSTTIGRCPGHAESLTGQALSVEGPSRAHSPAGFKARVGWAGSGMERADWPRGGRLG- 62
A +T G P AES E P+ A +P G G G G W G R
Sbjct: 50 AAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGS----GGGGGGCGAQHWAAGRRAQR 105
Query: 63 -WGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIV---GVDRIGCPGEL-- 116
G + G V+A S RR+ RR R AG G DR G L
Sbjct: 106 EQGAGAAVLADFGHVRAAPSGLRR--RRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPA 163
Query: 117 RRGVR----------------GRGAGRREVPGNPRSP----ARGTMGRPREEA 149
R R G G R VPG P P AR T PR A
Sbjct: 164 HRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAA 216
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.18
Identities = 51/173 (29%), Positives = 57/173 (32%), Gaps = 33/173 (19%)
Query: 4 APRSTTIGRCPGHAESLTGQALSVEGPSRAHSPAGFKARVGWAGSGMERADWPRGGRLG- 62
A +T G P AES E P+ A +P G G G G W G R
Sbjct: 50 AAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGS----GGGGGGCGAQHWAAGRRAQR 105
Query: 63 -WGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIV---GVDRIGCPGEL-- 116
G + G V+A S RR+ RR R AG G DR G L
Sbjct: 106 EQGAGAAVLADFGHVRAAPSGLRR--RRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPA 163
Query: 117 RRGVR----------------GRGAGRREVPGNPRSP----ARGTMGRPREEA 149
R R G G R VPG P P AR T PR A
Sbjct: 164 HRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAA 216
>gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo
sapiens]
Length = 244
Score = 32.0 bits (71), Expect = 0.23
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 98 PARLAGIVGVDRIG-CPGELRRGVRGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAG 156
PAR+A + I PG RR +R R R G P P+R PR +E+GS AG
Sbjct: 5 PARVATLYLSTVIARVPGPRRRALRTRSLSR----GRPVVPSRRGEWPPRRPSEVGSHAG 60
Query: 157 A 157
A
Sbjct: 61 A 61
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 32.0 bits (71), Expect = 0.23
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Query: 17 AESLTGQALSVEGPSRAHSPAGFKARVGWAGSGMERAD--WPRGGRLGWGRREPAVDWVG 74
A +++G+ +G R S A A+V WAG+ + + GG G G
Sbjct: 783 AAAVSGRGRLRDGLGRVASVAAEGAQVAWAGAVLVQGHEAGVAGGARGGGAAAGGPLAGA 842
Query: 75 LVKALSSDRLSAGRRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRREVPGNP 134
+V+ + R+ AGRR VG + G R+G G GRR G+
Sbjct: 843 VVQRMRQRRVRAGRR--------------RVGARAVAAAG--RQGAGAGGGGRRVRHGHG 886
Query: 135 RSPARGTMGRPREEAELGSSAGAA 158
A R++ L +A AA
Sbjct: 887 HGAAVLQRAPCRQQRHLAPAAAAA 910
>gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo
sapiens]
Length = 244
Score = 32.0 bits (71), Expect = 0.23
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 98 PARLAGIVGVDRIG-CPGELRRGVRGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAG 156
PAR+A + I PG RR +R R R G P P+R PR +E+GS AG
Sbjct: 5 PARVATLYLSTVIARVPGPRRRALRTRSLSR----GRPVVPSRRGEWPPRRPSEVGSHAG 60
Query: 157 A 157
A
Sbjct: 61 A 61
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 32.0 bits (71), Expect = 0.23
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Query: 17 AESLTGQALSVEGPSRAHSPAGFKARVGWAGSGMERAD--WPRGGRLGWGRREPAVDWVG 74
A +++G+ +G R S A A+V WAG+ + + GG G G
Sbjct: 783 AAAVSGRGRLRDGLGRVASVAAEGAQVAWAGAVLVQGHEAGVAGGARGGGAAAGGPLAGA 842
Query: 75 LVKALSSDRLSAGRRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRREVPGNP 134
+V+ + R+ AGRR VG + G R+G G GRR G+
Sbjct: 843 VVQRMRQRRVRAGRR--------------RVGARAVAAAG--RQGAGAGGGGRRVRHGHG 886
Query: 135 RSPARGTMGRPREEAELGSSAGAA 158
A R++ L +A AA
Sbjct: 887 HGAAVLQRAPCRQQRHLAPAAAAA 910
>gi|51944974 tumor suppressor candidate 1 [Homo sapiens]
Length = 212
Score = 31.6 bits (70), Expect = 0.30
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 7 STTIGRCPGHAESLTGQALSVEGPSRAH-SPAGFKARVGWAGSGMERADWPRGGRLGWGR 65
+T G C G + G+ G +R SP+G VGW G RAD R +L
Sbjct: 11 ATRRGSCCGGDGAADGRGPGRSGRARGGGSPSGGGGGVGWRG----RADGARQ-QLEERF 65
Query: 66 REPAVDWVGLVKALSS-DRLSA------------GRRVDRRHDSDPARLAGIVGVDRIGC 112
+ A + ++A DR +A RR+ R + S + + G G
Sbjct: 66 ADLAASHLEAIRARDEWDRQNARLRQENARLRLENRRLKRENRSLFRQALRLPGEGGNGT 125
Query: 113 PGELRR-------GVRGRGAGRREVPGNPRS 136
P E RR R R +GR + PG+PR+
Sbjct: 126 PAEARRVPEEASTNRRARDSGREDEPGSPRA 156
>gi|5803177 basic beta 2 syntrophin [Homo sapiens]
Length = 540
Score = 31.6 bits (70), Expect = 0.30
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 46 AGSGMERADWPRGGRLGWGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPA---RLA 102
AG+G A W R + G WV +V LS + LS + +PA A
Sbjct: 10 AGAGPAMAVWTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAA-ELEPALGPAAA 68
Query: 103 GIVGVDRIGCPGELRRGVRGRGAGRREVPGNPRSPA 138
G+ G G+ G RG G P PR PA
Sbjct: 69 AFNGLPNGGGAGDSLPGSPSRGLGPPSPPAPPRGPA 104
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 31.2 bits (69), Expect = 0.40
Identities = 41/140 (29%), Positives = 50/140 (35%), Gaps = 18/140 (12%)
Query: 22 GQALSVEGPSRAHSPAGFKARVGWAGSGMERADW-PR----GGRLGWGRREPAVDWVGLV 76
G+AL + P G AR G A + A W PR GRL G P
Sbjct: 178 GRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAP-------- 229
Query: 77 KALSSDRLSAGRRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRREVPGNPRS 136
+ R AG R A L+G+V P L R + A R P
Sbjct: 230 -RRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAAR--PCGAAL 286
Query: 137 PARGTMGRPREEAELGSSAG 156
P G GRPR G++AG
Sbjct: 287 PRSGFSGRPRGRG--GAAAG 304
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 31.2 bits (69), Expect = 0.40
Identities = 41/140 (29%), Positives = 50/140 (35%), Gaps = 18/140 (12%)
Query: 22 GQALSVEGPSRAHSPAGFKARVGWAGSGMERADW-PR----GGRLGWGRREPAVDWVGLV 76
G+AL + P G AR G A + A W PR GRL G P
Sbjct: 178 GRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAP-------- 229
Query: 77 KALSSDRLSAGRRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRREVPGNPRS 136
+ R AG R A L+G+V P L R + A R P
Sbjct: 230 -RRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAAR--PCGAAL 286
Query: 137 PARGTMGRPREEAELGSSAG 156
P G GRPR G++AG
Sbjct: 287 PRSGFSGRPRGRG--GAAAG 304
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 30.4 bits (67), Expect = 0.68
Identities = 50/173 (28%), Positives = 56/173 (32%), Gaps = 36/173 (20%)
Query: 4 APRSTTIGRCPGHAESLTGQALSVEGPSRAHSPAGFKARVGWAGSGMERADWPRGGRLG- 62
A +T G P AES E P+ A +P G G G W G R
Sbjct: 50 AAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGG-------GGGGCGAQHWAAGRRAQR 102
Query: 63 -WGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIV---GVDRIGCPGEL-- 116
G + G V+A S RR+ RR R AG G DR G L
Sbjct: 103 EQGAGAAVLADFGHVRAAPSGLRR--RRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPA 160
Query: 117 RRGVR----------------GRGAGRREVPGNPRSP----ARGTMGRPREEA 149
R R G G R VPG P P AR T PR A
Sbjct: 161 HRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAA 213
Score = 30.0 bits (66), Expect = 0.88
Identities = 37/123 (30%), Positives = 46/123 (37%), Gaps = 14/123 (11%)
Query: 29 GPSRAHSPAGFKA-RVGWAGSGMERADWPRGGRLGWGRREPAVDWVGLVKALSSDRLSAG 87
GP + A A R G A + E D P PA+ G + +AG
Sbjct: 41 GPGLCRTEAAAAATRAGAAPATAESPDTPEEPP---EEPAPAIAPGGGGGGCGAQHWAAG 97
Query: 88 RRVDRRHDSDPARLAGIVGVDRIGCPGELRR--------GVRGRGAGRREVPGNPRSPAR 139
RR R + A LA V P LRR G GRGAGR PG R+ A
Sbjct: 98 RRAQREQGAGAAVLADFGHVR--AAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAE 155
Query: 140 GTM 142
++
Sbjct: 156 RSL 158
>gi|239753497 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 30.4 bits (67), Expect = 0.68
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 113 PGELRRGVRGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAGAA 158
P R+G+ GR AG+R V G P R T R + L S G A
Sbjct: 69 PQLARQGLPGRAAGKRRVGGRPHPSPRSTKD-TRRQTFLASDPGRA 113
>gi|7657615 podocin [Homo sapiens]
Length = 383
Score = 30.0 bits (66), Expect = 0.88
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 77 KALSSDRLSAGRRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRREVPGNPRS 136
+A SS R S GR H + A G R G G G+GR PG PR+
Sbjct: 4 RARSSSRESRGRGGRTPHKENKRAKAERSGGGR----GRQEAGPEPSGSGRAGTPGEPRA 59
Query: 137 PA 138
PA
Sbjct: 60 PA 61
>gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens]
Length = 638
Score = 30.0 bits (66), Expect = 0.88
Identities = 17/49 (34%), Positives = 19/49 (38%)
Query: 112 CPGELRRGVRGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAGAAVG 160
CPG G R R P + +R G PR E GS GA G
Sbjct: 88 CPGAFESGARAARPPSRVEPRLATAASREGAGLPRAEVAAGSGRGARSG 136
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 29.3 bits (64), Expect = 1.5
Identities = 38/117 (32%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 28 EGPSRAHSPAGFKARVGWAGSGMERADWPRGGRLGWGRREPAVDWVGLVKALSSDRLSAG 87
+G + A SP R G G G R W + GR G V G + R G
Sbjct: 37 QGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGG------GVCGRGRGRGRGRGR---G 87
Query: 88 RRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRRE-VPGNPRSPARGTMG 143
R R P+ +G+ G D GC G G G GA RRE VP S G G
Sbjct: 88 RGRGRGRGRPPSGGSGL-GGDGGGCGG---GGSGGGGAPRREPVPFPSGSAGPGPRG 140
Score = 26.6 bits (57), Expect = 9.8
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 119 GVRGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAGAAVG 160
GV GRG GR G R RG P + LG G G
Sbjct: 72 GVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGG 113
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 29.3 bits (64), Expect = 1.5
Identities = 38/117 (32%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 28 EGPSRAHSPAGFKARVGWAGSGMERADWPRGGRLGWGRREPAVDWVGLVKALSSDRLSAG 87
+G + A SP R G G G R W + GR G V G + R G
Sbjct: 37 QGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGG------GVCGRGRGRGRGRGR---G 87
Query: 88 RRVDRRHDSDPARLAGIVGVDRIGCPGELRRGVRGRGAGRRE-VPGNPRSPARGTMG 143
R R P+ +G+ G D GC G G G GA RRE VP S G G
Sbjct: 88 RGRGRGRGRPPSGGSGL-GGDGGGCGG---GGSGGGGAPRREPVPFPSGSAGPGPRG 140
Score = 26.6 bits (57), Expect = 9.8
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 119 GVRGRGAGRREVPGNPRSPARGTMGRPREEAELGSSAGAAVG 160
GV GRG GR G R RG P + LG G G
Sbjct: 72 GVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGG 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,022,859
Number of Sequences: 37866
Number of extensions: 361753
Number of successful extensions: 1691
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1612
Number of HSP's gapped (non-prelim): 152
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.