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Search of human proteins with 239756710
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756710 PREDICTED: hypothetical protein XP_002345028 [Homo
sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756710 PREDICTED: hypothetical protein XP_002345028 [Homo ... 289 6e-79
gi|239751205 PREDICTED: hypothetical protein XP_002347755 [Homo ... 289 6e-79
gi|239745697 PREDICTED: hypothetical protein XP_002343528 [Homo ... 289 6e-79
gi|239753829 PREDICTED: hypothetical protein [Homo sapiens] 35 0.016
gi|239748392 PREDICTED: hypothetical protein XP_002346653 [Homo ... 35 0.016
gi|239742320 PREDICTED: hypothetical protein XP_002342490 [Homo ... 35 0.016
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 34 0.035
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 33 0.10
gi|169205008 PREDICTED: hypothetical protein [Homo sapiens] 32 0.13
gi|169205607 PREDICTED: hypothetical protein [Homo sapiens] 32 0.13
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 32 0.13
gi|169204476 PREDICTED: hypothetical protein [Homo sapiens] 32 0.13
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 32 0.13
gi|12056465 fibrillarin [Homo sapiens] 32 0.13
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 32 0.13
gi|28875797 small protein rich in arginine and glycine [Homo sap... 31 0.30
gi|239757070 PREDICTED: hypothetical protein [Homo sapiens] 31 0.30
gi|239751580 PREDICTED: hypothetical protein [Homo sapiens] 31 0.30
gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo ... 31 0.30
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 31 0.30
gi|32171221 GRP1 (general receptor for phosphoinositides 1)-asso... 31 0.30
gi|73476377 LBXCOR1 homolog [Homo sapiens] 31 0.39
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 31 0.39
gi|24497554 homeobox A13 [Homo sapiens] 30 0.50
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 30 0.50
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 30 0.50
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 30 0.50
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 30 0.50
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 30 0.50
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 30 0.50
>gi|239756710 PREDICTED: hypothetical protein XP_002345028 [Homo
sapiens]
Length = 141
Score = 289 bits (739), Expect = 6e-79
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI 60
MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI
Sbjct: 1 MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI 60
Query: 61 RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA 120
RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA
Sbjct: 61 RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA 120
Query: 121 GRGGGSWPEQARAAARGAGIR 141
GRGGGSWPEQARAAARGAGIR
Sbjct: 121 GRGGGSWPEQARAAARGAGIR 141
>gi|239751205 PREDICTED: hypothetical protein XP_002347755 [Homo
sapiens]
Length = 141
Score = 289 bits (739), Expect = 6e-79
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI 60
MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI
Sbjct: 1 MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI 60
Query: 61 RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA 120
RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA
Sbjct: 61 RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA 120
Query: 121 GRGGGSWPEQARAAARGAGIR 141
GRGGGSWPEQARAAARGAGIR
Sbjct: 121 GRGGGSWPEQARAAARGAGIR 141
>gi|239745697 PREDICTED: hypothetical protein XP_002343528 [Homo
sapiens]
Length = 141
Score = 289 bits (739), Expect = 6e-79
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI 60
MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI
Sbjct: 1 MFRIEMWVVKGKWVFRDVGAFLSTGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRI 60
Query: 61 RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA 120
RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA
Sbjct: 61 RGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGA 120
Query: 121 GRGGGSWPEQARAAARGAGIR 141
GRGGGSWPEQARAAARGAGIR
Sbjct: 121 GRGGGSWPEQARAAARGAGIR 141
>gi|239753829 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.016
Identities = 44/135 (32%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 9 VKGKWVFRDVGAFLSTGSTDAAAPKGMLGLR-----SGRGGGRAGRKMPGFKSLGRIRGR 63
V G W RD GA AAA +G L +G G G + PG + G
Sbjct: 25 VTGPWEPRDCGA-------TAAAREGRLVQMQPLPPAGFGAGGSQPLAPGSLRCREVVGA 77
Query: 64 AAVRVVLDSRVIRPRPFLMWERPGTLVRPG-FAAAAGRADADKGLGCRARGNRLGGGAGR 122
+ R L SRV RP W R G PG + A A + A + G R +R+
Sbjct: 78 SGPR--LASRV---RPSRTWRRRGVSAVPGVWLAQAEESSASRVSGSRLLPDRVFMATAS 132
Query: 123 GGGSWPEQARAAARG 137
GGG A AARG
Sbjct: 133 GGG-----AGGAARG 142
>gi|239748392 PREDICTED: hypothetical protein XP_002346653 [Homo
sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.016
Identities = 44/135 (32%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 9 VKGKWVFRDVGAFLSTGSTDAAAPKGMLGLR-----SGRGGGRAGRKMPGFKSLGRIRGR 63
V G W RD GA AAA +G L +G G G + PG + G
Sbjct: 25 VTGPWEPRDCGA-------TAAAREGRLVQMQPLPPAGFGAGGSQPLAPGSLRCREVVGA 77
Query: 64 AAVRVVLDSRVIRPRPFLMWERPGTLVRPG-FAAAAGRADADKGLGCRARGNRLGGGAGR 122
+ R L SRV RP W R G PG + A A + A + G R +R+
Sbjct: 78 SGPR--LASRV---RPSRTWRRRGVSAVPGVWLAQAEESSASRVSGSRLLPDRVFMATAS 132
Query: 123 GGGSWPEQARAAARG 137
GGG A AARG
Sbjct: 133 GGG-----AGGAARG 142
>gi|239742320 PREDICTED: hypothetical protein XP_002342490 [Homo
sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.016
Identities = 44/135 (32%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 9 VKGKWVFRDVGAFLSTGSTDAAAPKGMLGLR-----SGRGGGRAGRKMPGFKSLGRIRGR 63
V G W RD GA AAA +G L +G G G + PG + G
Sbjct: 25 VTGPWEPRDCGA-------TAAAREGRLVQMQPLPPAGFGAGGSQPLAPGSLRCREVVGA 77
Query: 64 AAVRVVLDSRVIRPRPFLMWERPGTLVRPG-FAAAAGRADADKGLGCRARGNRLGGGAGR 122
+ R L SRV RP W R G PG + A A + A + G R +R+
Sbjct: 78 SGPR--LASRV---RPSRTWRRRGVSAVPGVWLAQAEESSASRVSGSRLLPDRVFMATAS 132
Query: 123 GGGSWPEQARAAARG 137
GGG A AARG
Sbjct: 133 GGG-----AGGAARG 142
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 34.3 bits (77), Expect = 0.035
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 47 AGRKMPGFKSLGRIRGRAAVRVVLDSRVIRPRPFLMWERPGTLVR------PGFAAAAGR 100
AG PG LG R R R +D+ +P+ + GTL PGF A
Sbjct: 710 AGVGGPGLTELGHPRKRG--RGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAE 767
Query: 101 ADADKGLGCRARGNRLGGGAGRGGGSWPEQARAAA 135
DKG G GG AGR G +ARA A
Sbjct: 768 WAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFA 802
Score = 29.3 bits (64), Expect = 1.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 108 GCRARGNRLGGGAGRGGGSWPEQARAA 134
G R RG + GG GRGGG + AR +
Sbjct: 664 GFRRRGGKAGGFGGRGGGHAAKSARCS 690
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 32.7 bits (73), Expect = 0.10
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 23 STGSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRIRGRAAVRVVLDSRVIR-PRPFL 81
++G A P G G +G GGRA + L + GR + L+SRV++ R FL
Sbjct: 77 ASGIAGLAGPGGGSGAAAG-AGGRALELAEARRRLLEVEGRRRLVSELESRVLQLHRVFL 135
Query: 82 MWE-----RPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQARAAAR 136
E R +L R + G A A+ L A G+RL G RG P A+A
Sbjct: 136 AAELRLAHRAESLSR----LSGGVAQAELYLA--AHGSRLKKGPRRGRRGRPPALLASAL 189
Query: 137 GAG 139
G G
Sbjct: 190 GLG 192
>gi|169205008 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 32.3 bits (72), Expect = 0.13
Identities = 44/127 (34%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 21 FLSTGSTDAAAPKGMLGLRSGRGG-------GRAGRKMPGFKSLGRIRGRAAVRVVLDSR 73
FLS AAA + G+ G GG G AG + G + GR RG AA V+
Sbjct: 69 FLSMSEAVAAALGELSGINGGLGGDGSRSGAGAAGTQAHGVQ--GR-RGSAAAAVLGLHG 125
Query: 74 VIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQARA 133
I P FL W L++ G AA G A G G R RG R G GG+
Sbjct: 126 DIFPC-FLPW-----LLKLGREAADG-AVKPGGSGDRGRGGRGSGVRAGPGGAEAAGEGE 178
Query: 134 AARGAGI 140
A G G+
Sbjct: 179 AREGRGL 185
>gi|169205607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 32.3 bits (72), Expect = 0.13
Identities = 44/127 (34%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 21 FLSTGSTDAAAPKGMLGLRSGRGG-------GRAGRKMPGFKSLGRIRGRAAVRVVLDSR 73
FLS AAA + G+ G GG G AG + G + GR RG AA V+
Sbjct: 69 FLSMSEAVAAALGELSGINGGLGGDGSRSGAGAAGTQAHGVQ--GR-RGSAAAAVLGLHG 125
Query: 74 VIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQARA 133
I P FL W L++ G AA G A G G R RG R G GG+
Sbjct: 126 DIFPC-FLPW-----LLKLGREAADG-AVKPGGSGDRGRGGRGSGVRAGPGGAEAAGEGE 178
Query: 134 AARGAGI 140
A G G+
Sbjct: 179 AREGRGL 185
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 32.3 bits (72), Expect = 0.13
Identities = 44/131 (33%), Positives = 51/131 (38%), Gaps = 27/131 (20%)
Query: 29 AAAPKGMLGL---RSGRGGGRAGRKMPGFKSLGRIRGRAAVR---VVLDSRVIRPR--PF 80
A +P G L L RG GRAG G + GR RGR A VV + +RP+ P
Sbjct: 215 AHSPAGRLALGLIAPRRGAGRAGA---GAAACGR-RGRIAAPLSGVVQKASYLRPKNLPR 270
Query: 81 LMWERPGTLVRPGFAAAA---------GRADADKGLGCRARGNRLGGGAGRG-----GGS 126
L+ P RP AA GR A G G R G G RG +
Sbjct: 271 LL-SMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPAST 329
Query: 127 WPEQARAAARG 137
W AR A G
Sbjct: 330 WALAARPRAGG 340
>gi|169204476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 32.3 bits (72), Expect = 0.13
Identities = 44/127 (34%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 21 FLSTGSTDAAAPKGMLGLRSGRGG-------GRAGRKMPGFKSLGRIRGRAAVRVVLDSR 73
FLS AAA + G+ G GG G AG + G + GR RG AA V+
Sbjct: 69 FLSMSEAVAAALGELSGINGGLGGDGSRSGAGAAGTQAHGVQ--GR-RGSAAAAVLGLHG 125
Query: 74 VIRPRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQARA 133
I P FL W L++ G AA G A G G R RG R G GG+
Sbjct: 126 DIFPC-FLPW-----LLKLGREAADG-AVKPGGSGDRGRGGRGSGVRAGPGGAEAAGEGE 178
Query: 134 AARGAGI 140
A G G+
Sbjct: 179 AREGRGL 185
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 32.3 bits (72), Expect = 0.13
Identities = 44/131 (33%), Positives = 51/131 (38%), Gaps = 27/131 (20%)
Query: 29 AAAPKGMLGL---RSGRGGGRAGRKMPGFKSLGRIRGRAAVR---VVLDSRVIRPR--PF 80
A +P G L L RG GRAG G + GR RGR A VV + +RP+ P
Sbjct: 215 AHSPAGRLALGLIAPRRGAGRAGA---GAAACGR-RGRIAAPLSGVVQKASYLRPKNLPR 270
Query: 81 LMWERPGTLVRPGFAAAA---------GRADADKGLGCRARGNRLGGGAGRG-----GGS 126
L+ P RP AA GR A G G R G G RG +
Sbjct: 271 LL-SMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPAST 329
Query: 127 WPEQARAAARG 137
W AR A G
Sbjct: 330 WALAARPRAGG 340
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 32.3 bits (72), Expect = 0.13
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 90 VRPGFAAAAGRADADKGLGCR-ARGNR--LGGGAGRGGGSWPEQARAAARGAG 139
++PGF+ G G G R RG R GGG GRGGG R RG G
Sbjct: 1 MKPGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGG-----FRGRGRGGG 48
Score = 30.0 bits (66), Expect = 0.66
Identities = 19/56 (33%), Positives = 21/56 (37%)
Query: 84 ERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQARAAARGAG 139
+R G R GF GR +G G G GGG G GG RG G
Sbjct: 20 DRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRG 75
Score = 27.7 bits (60), Expect = 3.3
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 91 RPGFAAAAGR-------ADADKGLGCRARGNRLGGGAGRGGG 125
R GF GR +G G R RG GGG G GGG
Sbjct: 15 RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGG 56
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 32.3 bits (72), Expect = 0.13
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 29 AAAPKGMLGLRSG------RGGGRAGR---KMPGFKSLGRIRGR---AAVRVVLDSRVIR 76
+A +LG R+G +GGGR G + G G RGR A ++ R R
Sbjct: 74 SARRAAVLGRRAGPELLPQQGGGRGGEMQVEAGGTSPAGERRGRGIPAPAKLGGARRSRR 133
Query: 77 PRPFLMWERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQAR 132
+P + ER G A A AD +G A+G+R A R GGS E R
Sbjct: 134 AQPPITQER-------GDAWATAPADGSRGSRPLAKGSREEVKAPRAGGSAAEDLR 182
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 31.2 bits (69), Expect = 0.30
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 19/129 (14%)
Query: 16 RDVGAFLSTGSTDAAAPKGMLGL-RSGRGGGRAGRKMPGFKSLGRIRGRAAVR---VVLD 71
R +GA P GL R G GGRA R + +RG ++R ++
Sbjct: 90 RPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTL--------LRGGMSLRGQNLLRG 141
Query: 72 SRVIRPRPFLMWERPGTLVRPGFAAAAGRADADKG-LGCRARGNRLGGGAGRGGGSWPEQ 130
R + PR L R G R G GR +G +G G R G GRG G + +
Sbjct: 142 GRAVAPRMGL--RRGGVRGRGG----PGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGR 195
Query: 131 ARAAARGAG 139
R RG G
Sbjct: 196 GRGRGRGRG 204
Score = 28.5 bits (62), Expect = 1.9
Identities = 35/115 (30%), Positives = 43/115 (37%), Gaps = 22/115 (19%)
Query: 25 GSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRIRGRAAVRVVLDSRVIRPRPFLMWE 84
G A +G +G GRG R +P G +RG A R +L
Sbjct: 89 GRPIGALARGAIG---GRGLPIIQRGLPR----GGLRGGRATRTLL-------------- 127
Query: 85 RPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQARAAARGAG 139
R G +R GRA A + +G R G R GG GRGG R G G
Sbjct: 128 RGGMSLRGQNLLRGGRAVAPR-MGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRG 181
Score = 26.6 bits (57), Expect = 7.3
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 41 GRGGGRAGRKMPGFKSLGRIRGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAAAAGR 100
GRG G GR GF GR RGR R RP L E+ + + G
Sbjct: 179 GRGRGMIGRGRGGFGGRGRGRGR--------GRGALARPVLTKEQLDNQLDAYMSKTKGH 230
Query: 101 ADAD 104
DA+
Sbjct: 231 LDAE 234
>gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.30
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 87 GTLVRPGFAAAAGRAD---ADKGLGCRARGNRLG-----GGAGRGGGSWPEQARAAARGA 138
G R G A AAG+ A RA G RL GAGRGGG E ARA R
Sbjct: 53 GPGARSGRAGAAGQGAQGWAAARRESRAAGGRLECLGLRAGAGRGGGEEEEPARAPPRRG 112
Query: 139 G 139
G
Sbjct: 113 G 113
>gi|239751580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.30
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 87 GTLVRPGFAAAAGRAD---ADKGLGCRARGNRLG-----GGAGRGGGSWPEQARAAARGA 138
G R G A AAG+ A RA G RL GAGRGGG E ARA R
Sbjct: 53 GPGARSGRAGAAGQGAQGWAAARRESRAAGGRLECLGLRAGAGRGGGEEEEPARAPPRRG 112
Query: 139 G 139
G
Sbjct: 113 G 113
>gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo
sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.30
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 87 GTLVRPGFAAAAGRAD---ADKGLGCRARGNRLG-----GGAGRGGGSWPEQARAAARGA 138
G R G A AAG+ A RA G RL GAGRGGG E ARA R
Sbjct: 53 GPGARSGRAGAAGQGAQGWAAARRESRAAGGRLECLGLRAGAGRGGGEEEEPARAPPRRG 112
Query: 139 G 139
G
Sbjct: 113 G 113
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 31.2 bits (69), Expect = 0.30
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 25 GSTDAAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRIRGRAAVRVVLDSRVIRPRPFLMWE 84
G +A P + G GG G +PG ++ R G + R ++ + R F +
Sbjct: 1336 GDKEAPPPVLLTPKAVGTPGGGGGGAVPGISAMSR--GDLSQR----AKDLSKRSFSS-Q 1388
Query: 85 RPGTLV---RPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWP 128
RPG RPG AG + + G G G R G G G SWP
Sbjct: 1389 RPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRG-DKRSWP 1434
>gi|32171221 GRP1 (general receptor for phosphoinositides
1)-associated scaffold protein [Homo sapiens]
Length = 395
Score = 31.2 bits (69), Expect = 0.30
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 86 PGTLVRPGFAAAAG-RADADKGLGCRARGNRLGGGAGRGGGSWPEQARAAARGAGIR 141
PG P G RA + R G GGG G G W E A G G+R
Sbjct: 310 PGPAETPAVGPGPGPRAALSRSASVRCAGPGGGGGGGAPGALWTEAREQALCGPGLR 366
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 30.8 bits (68), Expect = 0.39
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 25 GSTDAAAPKGMLGLRSGRGGGRAGRKMP-GFKSLGRIRGRAAVRVVLDSRVIRPRPFLMW 83
G+ A G L G G G G M G + G + AAV + + P + W
Sbjct: 389 GTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFW 448
Query: 84 ERPGTLVRPGFAAAAGRADA 103
G+L P + AA +A A
Sbjct: 449 PAAGSLPVPSYPAAQSQAKA 468
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 30.8 bits (68), Expect = 0.39
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 25 GSTDAAAPKGMLGLRSGRG-----GGRAGRKMPGFKSLGRIRGRAAVRVVLDSRVIRPRP 79
G T A P GM GL RG G + PGFK + + G ++ S P
Sbjct: 872 GDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPGTPGLKGDRGS----PGM 927
Query: 80 FLMWERPGTLVRPGFAAAAGRA 101
PG RPGF + G A
Sbjct: 928 DGFQGMPGLKGRPGFPGSKGEA 949
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 30.4 bits (67), Expect = 0.50
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 20/77 (25%)
Query: 68 VVLDSRVIRPRPFLMWERPGTLVRP-------GFAAAAGRADADKGLGCRARGNRLGGGA 120
V+L R I P +++ G LV G AAAA A A A
Sbjct: 5 VLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAA-------------AAAA 51
Query: 121 GRGGGSWPEQARAAARG 137
G GGG +P A AAA G
Sbjct: 52 GAGGGGFPHPAAAAAGG 68
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 30.4 bits (67), Expect = 0.50
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 29 AAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRIRGRAAVRVVLDSR--VIRPRPF---LMW 83
AAA + G R+GR R G ++ S GR G A RV R V P +
Sbjct: 432 AAARAKLAGQRAGRARARTGSQVG---SRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAA 488
Query: 84 ERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWP 128
RP ++ P A D + A+ LGG G+G G+ P
Sbjct: 489 PRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPP 533
Score = 28.5 bits (62), Expect = 1.9
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 83 WERPGTLVRPGFAA-------AAGRADADKGLGCRARGNRLGGGAGR 122
W+ P PG AA AGRA A G +RG G GAGR
Sbjct: 421 WDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGR 467
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 30.4 bits (67), Expect = 0.50
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 29 AAAPKGMLGLRSGRGGGRAGRKMPGFKSLGRIRGRAAVRVVLDSR--VIRPRPF---LMW 83
AAA + G R+GR R G ++ S GR G A RV R V P +
Sbjct: 432 AAARAKLAGQRAGRARARTGSQVG---SRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAA 488
Query: 84 ERPGTLVRPGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWP 128
RP ++ P A D + A+ LGG G+G G+ P
Sbjct: 489 PRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPP 533
Score = 28.5 bits (62), Expect = 1.9
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 83 WERPGTLVRPGFAA-------AAGRADADKGLGCRARGNRLGGGAGR 122
W+ P PG AA AGRA A G +RG G GAGR
Sbjct: 421 WDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGR 467
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 30.4 bits (67), Expect = 0.50
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 95 AAAAGRADADKGLGCRARGNRLGGGAGRGGG 125
+AAA A A LG R G GGG G GGG
Sbjct: 397 SAAAAAAAAAAALGSRGGGGGGGGGGGGGGG 427
Score = 27.7 bits (60), Expect = 3.3
Identities = 16/32 (50%), Positives = 16/32 (50%)
Query: 95 AAAAGRADADKGLGCRARGNRLGGGAGRGGGS 126
AAAA G G G GGGAG GGGS
Sbjct: 404 AAAAALGSRGGGGGGGGGGGGGGGGAGAGGGS 435
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 30.4 bits (67), Expect = 0.50
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 38 LRSGRGGGRA------GRKMPGFKSLGRIRGRAAVRVVLDSRVIRPRPFLMWERPGTLVR 91
+R+ GGGR G G G G +A+ + P P R G R
Sbjct: 1 MRAHPGGGRCCPEQEEGESAAGGSGAG---GDSAIEQGGQGSALAPSPVSGVRREGA--R 55
Query: 92 PGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQARAAARGAGI 140
G A +G G RG G G GRG G + R + G+G+
Sbjct: 56 GGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGL 104
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 30.4 bits (67), Expect = 0.50
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 38 LRSGRGGGRA------GRKMPGFKSLGRIRGRAAVRVVLDSRVIRPRPFLMWERPGTLVR 91
+R+ GGGR G G G G +A+ + P P R G R
Sbjct: 1 MRAHPGGGRCCPEQEEGESAAGGSGAG---GDSAIEQGGQGSALAPSPVSGVRREGA--R 55
Query: 92 PGFAAAAGRADADKGLGCRARGNRLGGGAGRGGGSWPEQARAAARGAGI 140
G A +G G RG G G GRG G + R + G+G+
Sbjct: 56 GGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGL 104
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 30.4 bits (67), Expect = 0.50
Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 29/120 (24%)
Query: 40 SGRGGGRAGRKMPGFKSLGRIRGRAAVRVVLDSRVIRPRPFLMWERPGTLVRPGFAA--- 96
SG G A ++P ++ R R R++ SR P P PG PGFA+
Sbjct: 252 SGGSGPSAILRLPSYRFRYRRRSRSS------SRSSEPSPSRD-ASPGGPGGPGFASTDI 304
Query: 97 --------------AAGRADADKGLGCRA-----RGNRLGGGAGRGGGSWPEQARAAARG 137
AAG A A G G GGG G GGG+ E+ R A G
Sbjct: 305 SMYTLSRDPSKGSVAAGLAGAGGGGGGAVGAFGGAAGGAGGGGGGGGGAGAERDRGGASG 364
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.142 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,084,512
Number of Sequences: 37866
Number of extensions: 322717
Number of successful extensions: 2865
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 2358
Number of HSP's gapped (non-prelim): 541
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.