Guide to the Human Genome
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Name: LOC100291391 Sequence: fasta or formatted (194aa) NCBI GI: 239748392
Description:

PREDICTED: hypothetical protein XP_002346653

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         26           3
 C cysteine            3.1          6           2
 D aspartate           1.5          3           1
 E glutamate           3.6          7           2
 F phenylalanine       2.1          4           1
 G glycine            12.9         25           3
 H histidine           1.0          2           1
 I isoleucine          0.0          0           0
 K lysine              1.0          2           1
 L leucine             8.2         16           2
 M methionine          2.1          4           1
 N asparagine          0.0          0           0
 P proline             9.3         18           2
 Q glutamine           2.6          5           1
 R arginine           13.9         27           3
 S serine             11.9         23           2
 T threonine           4.1          8           1
 V valine              6.7         13           2
 W tryptophan          2.6          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346653 
LOC100294040          1.000   PREDICTED: hypothetical protein 
LOC100289402          1.000   PREDICTED: hypothetical protein XP_002342490 
LOC100292041          0.027   PREDICTED: hypothetical protein XP_002345028 
LOC100291163          0.027   PREDICTED: hypothetical protein XP_002347755 
LOC100287522          0.027   PREDICTED: hypothetical protein XP_002343528 
CLASP1                0.024   CLIP-associating protein 1 isoform 2 
LOC100293604          0.024   PREDICTED: hypothetical protein 
LOC100289721          0.024   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.024   PREDICTED: hypothetical protein XP_002343157 
LOC100287063          0.024   PREDICTED: hypothetical protein XP_002342368 
MSC                   0.024   musculin 
DACT3                 0.022   thymus expressed gene 3-like 
LOC100291887          0.022   PREDICTED: hypothetical protein XP_002345195 
LOC100287051          0.022   PREDICTED: hypothetical protein 
LOC100287051          0.022   PREDICTED: hypothetical protein XP_002343673 
FAM83C                0.022   hypothetical protein LOC128876 
ZFPM1                 0.022   zinc finger protein, multitype 1 
RP1L1                 0.022   retinitis pigmentosa 1-like 1 
LOC100291807          0.019   PREDICTED: hypothetical protein XP_002345507 
TP53I13               0.019   tumor protein p53 inducible protein 13 
FAM120AOS             0.019   hypothetical protein LOC158293 
FAM123A               0.019   hypothetical protein LOC219287 isoform 1 
GATA4                 0.019   GATA binding protein 4 
TACC3                 0.019   transforming, acidic coiled-coil containing protein 3...
KIAA1026              0.019   kazrin isoform B 
CRB2                  0.019   crumbs homolog 2 
DENND4B               0.019   DENN/MADD domain containing 4B 
LOC100289408          0.019   PREDICTED: hypothetical protein 
LOC100289408          0.019   PREDICTED: hypothetical protein XP_002344217 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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