Guide to the Human Genome
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Search of human proteins with 239756524

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756524 PREDICTED: hypothetical protein [Homo sapiens]
         (176 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756524 PREDICTED: hypothetical protein [Homo sapiens]           377   e-105
gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo ...   377   e-105
gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo ...   377   e-105
gi|169212132 PREDICTED: CMT1A duplicated region transcript 15-li...    33   0.13 
gi|89041269 PREDICTED: CMT1A duplicated region transcript 15-lik...    33   0.13 
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   32   0.22 
gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-li...    32   0.22 
gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-lik...    32   0.22 
gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo ...    32   0.28 
gi|4758156 diacylglycerol kinase, iota [Homo sapiens]                  31   0.49 
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]            30   0.83 
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]            30   0.83 
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]            30   0.83 
gi|4557743 Mediterranean fever protein [Homo sapiens]                  30   1.1  
gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]            30   1.4  
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ...    30   1.4  
gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo ...    30   1.4  
gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo ...    30   1.4  
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ...    30   1.4  
gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ...    30   1.4  
gi|134031945 SCO-spondin [Homo sapiens]                                30   1.4  
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]            29   1.8  
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ...    29   1.8  
gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens]                29   1.8  
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]       29   1.8  
gi|38524591 intramembrane protease 5 [Homo sapiens]                    29   2.4  
gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo ...    28   3.1  
gi|55741868 zinc finger protein 319 [Homo sapiens]                     28   3.1  
gi|4507595 tumor necrosis factor ligand superfamily, member 11 i...    28   4.1  
gi|55770876 notch4 preproprotein [Homo sapiens]                        28   4.1  

>gi|239756524 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 176

 Score =  377 bits (968), Expect = e-105
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
           MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV
Sbjct: 1   MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60

Query: 61  IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
           IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL
Sbjct: 61  IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120

Query: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
           ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG
Sbjct: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176


>gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo
           sapiens]
          Length = 176

 Score =  377 bits (968), Expect = e-105
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
           MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV
Sbjct: 1   MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60

Query: 61  IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
           IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL
Sbjct: 61  IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120

Query: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
           ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG
Sbjct: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176


>gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo
           sapiens]
          Length = 176

 Score =  377 bits (968), Expect = e-105
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
           MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV
Sbjct: 1   MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60

Query: 61  IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
           IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL
Sbjct: 61  IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120

Query: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
           ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG
Sbjct: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176


>gi|169212132 PREDICTED: CMT1A duplicated region transcript 15-like
           2 [Homo sapiens]
          Length = 110

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 18/94 (19%)

Query: 27  GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
           G+ G GP          G  + HC  P           + S +V R   TCG  CR    
Sbjct: 25  GQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKAS 84

Query: 77  KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
            G          P      G G SS GP   GAA
Sbjct: 85  MGR--------APSRESAGGGGSSSQGPAQPGAA 110


>gi|89041269 PREDICTED: CMT1A duplicated region transcript 15-like 2
           [Homo sapiens]
          Length = 110

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 18/94 (19%)

Query: 27  GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
           G+ G GP          G  + HC  P           + S +V R   TCG  CR    
Sbjct: 25  GQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKAS 84

Query: 77  KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
            G          P      G G SS GP   GAA
Sbjct: 85  MGR--------APSRESAGGGGSSSQGPAQPGAA 110


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 25   LKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGI 84
            LKGE+G    +G P   PP   G R+K A         P GT G    +GL   EG  G 
Sbjct: 1526 LKGERGRQGRRGWPG--PPGTPGSRRKTAAHGRRGHTGPQGTAGIPGPDGL---EGSLG- 1579

Query: 85   VLSVPQ------HLHPEGTGVSSSGPLG 106
             L  PQ       +  E  GV S GP G
Sbjct: 1580 -LKGPQGPRGEAGVKGEKGGVGSKGPQG 1606


>gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-like
           1 [Homo sapiens]
          Length = 110

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 18/94 (19%)

Query: 27  GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
           G+ G GP          G  + HC  P           + S ++ R   TCG  CR    
Sbjct: 25  GQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKAS 84

Query: 77  KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
            G          P      G G SS GP   GAA
Sbjct: 85  MGR--------APSRESAGGGGSSSQGPAQPGAA 110


>gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-like 1
           [Homo sapiens]
          Length = 110

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 18/94 (19%)

Query: 27  GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
           G+ G GP          G  + HC  P           + S ++ R   TCG  CR    
Sbjct: 25  GQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKAS 84

Query: 77  KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
            G          P      G G SS GP   GAA
Sbjct: 85  MGR--------APSRESAGGGGSSSQGPAQPGAA 110


>gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo
           sapiens]
          Length = 474

 Score = 32.0 bits (71), Expect = 0.28
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 40  CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGV 99
           C+P  +QG R      V  A  R G  CG  C+  + + E R  +  SV +   P+    
Sbjct: 14  CVPGDSQGSRAGIRVRVLCAGRRSGRPCGHPCQSAVCRAELRAALRASVSECCVPD---E 70

Query: 100 SSSGPLG 106
           +  GP G
Sbjct: 71  AQGGPAG 77



 Score = 28.9 bits (63), Expect = 2.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 40  CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQ 90
           C+P  AQG R      V  A  R G  CG  C+  + + + R  +  SV +
Sbjct: 170 CVPGDAQGNRAGIRVRVLCAGRRSGRPCGHPCQSAVCRTKLRAALRASVSE 220



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 40  CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGV 99
           C+P  +QG R     SV  A    G  CG  C+  + +   R  +  SV +   P   G 
Sbjct: 378 CVPGDSQGGRVGIRVSVLCAGRLSGQPCGHPCQSAVCRATVRAAVRASVSECCVP---GD 434

Query: 100 SSSGPLG 106
           S  G +G
Sbjct: 435 SQGGRVG 441



 Score = 27.3 bits (59), Expect = 7.0
 Identities = 17/64 (26%), Positives = 26/64 (40%)

Query: 40  CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGV 99
           C+P  AQG R      V  A    G  CG  C+  + +   R  +  S+ +   P  +  
Sbjct: 274 CVPGDAQGNRAGIRVRVLCAGRSSGRPCGHPCQSAVCRATLRAAVQASMSECCVPGDSQG 333

Query: 100 SSSG 103
           S +G
Sbjct: 334 SRAG 337


>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
          Length = 1065

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 21/116 (18%)

Query: 34  GKGAPHCLP-PRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHL 92
           G+G  H LP P A+G  +  A + + A   PG   G  C      G G      S  +  
Sbjct: 5   GRGC-HLLPLPAARGPARAPAAAAAAAASPPGPCSGAACAPSAAAGAGAMNPSSSAGEEK 63

Query: 93  HPEGTGVSSSG---------------PLGSG---AASLLATHPPFLARQQHADDTL 130
              G G SSSG               P G+G   AA   A   P  A Q+  D+ L
Sbjct: 64  GATG-GSSSSGSGAGSCCLGAEGGADPRGAGSAAAAGAAALDEPAAAGQKEKDEAL 118


>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 266

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 25  LKGEKGWGPGKGAPHCLPPRAQGQRQ-KAATSVSTAVIRPGGTCGR 69
           L G +   PG G  HC   R +G+R+ + A  V   +  PGG C R
Sbjct: 204 LGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTR 249


>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 266

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 25  LKGEKGWGPGKGAPHCLPPRAQGQRQ-KAATSVSTAVIRPGGTCGR 69
           L G +   PG G  HC   R +G+R+ + A  V   +  PGG C R
Sbjct: 204 LGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTR 249


>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 266

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 25  LKGEKGWGPGKGAPHCLPPRAQGQRQ-KAATSVSTAVIRPGGTCGR 69
           L G +   PG G  HC   R +G+R+ + A  V   +  PGG C R
Sbjct: 204 LGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTR 249


>gi|4557743 Mediterranean fever protein [Homo sapiens]
          Length = 781

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 93  HPEGTGVSSSGPLGSGAASLLATHP---------PFLARQQHADDTLACQSGP 136
           HPEG   +   P G GAASL  + P         P   R++ A + L  Q  P
Sbjct: 123 HPEGNEGNGPRPYGGGAASLRCSQPEAGRGLSRKPLSKRREKASEGLDAQGKP 175


>gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 12  WGCKAHFQLAGKWLKGEKGWGPGKGAPHC---LPPRAQGQRQKAATS 55
           WG +A     G W K    W  G+ AP C     PR  G R  AA +
Sbjct: 389 WGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAA 435


>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
           sapiens]
          Length = 492

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 19  QLAGKWLKGEKGWGPGKGAPHCLPP 43
           +L GK   G KG G   GAPH LPP
Sbjct: 326 KLGGKRGVGRKGQGTRLGAPHSLPP 350


>gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
           sapiens]
          Length = 444

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 12  WGCKAHFQLAGKWLKGEKGWGPGKGAPHC---LPPRAQGQRQKAATS 55
           WG +A     G W K    W  G+ AP C     PR  G R  AA +
Sbjct: 389 WGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAA 435


>gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo
           sapiens]
          Length = 138

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 21/108 (19%)

Query: 32  GPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQH 91
           GP    P   PP A          + +    PG T  R C     +GEGR          
Sbjct: 22  GPISVGPQAAPPGATVTHPPTKPLICSGGFIPG-TRPRLCSR---EGEGR---------- 67

Query: 92  LHPEGTGVSSSGPLGSGAASLLATHPPFLARQQHADDTLACQSGPSSC 139
              +G  +   GPL S  +SLL   P +  R+ HAD  +   +GP  C
Sbjct: 68  ---KGEALGRQGPLRS--SSLLPPLPTWPGREGHADGNI--PAGPGLC 108


>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
           sapiens]
          Length = 492

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 19  QLAGKWLKGEKGWGPGKGAPHCLPP 43
           +L GK   G KG G   GAPH LPP
Sbjct: 326 KLGGKRGVGRKGQGTRLGAPHSLPP 350


>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
           sapiens]
          Length = 480

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 12  WGCKAHFQLAGKWLKGEKGWGPGKGAPHC---LPPRAQGQRQKAATS 55
           WG +A     G W K    W  G+ AP C     PR  G R  AA +
Sbjct: 389 WGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAA 435


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 33   PGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEG 80
            P   +P CL P  Q ++Q     +      P G C R C  GL    G
Sbjct: 4285 PHHRSPPCLGPDTQTRQQPCPGLLEACSWGPWGPCSRSCGPGLASRSG 4332


>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 650

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 26  KGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIV 85
           +G   W  G G P C    + G R+    +   AV   G +  R     L       G+V
Sbjct: 87  RGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLV 146

Query: 86  LSVPQHLHPEGTGVSSSGPLG----SGAASLLA 114
           L        EG GV + G  G    +GAAS L+
Sbjct: 147 LG-------EGVGVGAGGEGGGEGAAGAASSLS 172


>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
           sapiens]
          Length = 725

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 26  KGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIV 85
           +G   W  G G P C    + G R+    +   AV   G +  R     L       G+V
Sbjct: 87  RGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLV 146

Query: 86  LSVPQHLHPEGTGVSSSGPLG----SGAASLLA 114
           L        EG GV + G  G    +GAAS L+
Sbjct: 147 LG-------EGVGVGAGGEGGGEGAAGAASSLS 172


>gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens]
          Length = 388

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 40 CLPPRAQGQRQKAATSVSTAVIR-PGGTCGRECREGL-LKGEGRWGIVLSVPQHLHPEGT 97
          CL  R  G R+K A S + A ++  GG     C   L + G G+   V  +  HLH +GT
Sbjct: 3  CLYGRVGGARRKMAASAAAAELQASGGPRHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGT 62


>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
          Length = 2217

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 27/126 (21%)

Query: 28   EKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLS 87
            ++G  PG   PH L     G  +++  S + A +          ++ +L    RW I+  
Sbjct: 1268 DRGSDPGTSPPH-LSTCGLGTGEESRQSQANAPVY---------QQNVLHTGKRWFIICP 1317

Query: 88   VPQHLHPEGTGVSSSGPLGS---GAASLLATH---------PPFLARQQHADDTLACQSG 135
            V +H  PE    S   PL S    A+   A +         P FLA QQ     L  Q+G
Sbjct: 1318 VAEHPAPEAPESSPPLPLSSLPPEASQDSAPYKDQLSSKEQPSFLASQQ-----LLSQAG 1372

Query: 136  PSSCQG 141
            PS+  G
Sbjct: 1373 PSNPPG 1378


>gi|38524591 intramembrane protease 5 [Homo sapiens]
          Length = 684

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 31  WGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVL 86
           W PG+ +PH    R+  QR    T   TA++   G C    +  L +G+G  G+++
Sbjct: 69  WCPGEDSPHQAQLRSPSQRPLRQT---TAMVM-RGNCSFHTKGWLAQGQGAHGLLI 120


>gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo
           sapiens]
          Length = 485

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 14/66 (21%)

Query: 39  HCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTG 98
           H LPP  +G               P G    +CRE   +  G W     +  H  P G+ 
Sbjct: 166 HQLPPHIEGV--------------PEGRTVAKCRENWSQWTGHWSQWTGLWYHEPPTGSL 211

Query: 99  VSSSGP 104
           +SSS P
Sbjct: 212 ISSSSP 217


>gi|55741868 zinc finger protein 319 [Homo sapiens]
          Length = 582

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 87  SVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFLARQQHADDTLACQSGPSSCQGGWRVA 146
           ++ +H  P GT   +  PLG     +L    P L   QHA    A + GP     G  +A
Sbjct: 30  ALAEHTLPPGT---AENPLGCAVYGILLQPDPGLQPPQHAPLQAAGEPGPKCGVCGHDLA 86

Query: 147 QLTS 150
            L+S
Sbjct: 87  HLSS 90


>gi|4507595 tumor necrosis factor ligand superfamily, member 11
          isoform 1 [Homo sapiens]
          Length = 317

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 23 KWLKGEKGWGPGKGAP-----HCLPPRAQGQRQKAATSVSTAVIRPG 64
          K+L+G +  G G GAP     H  PP A  Q   A+ S+  A++  G
Sbjct: 10 KYLRGSEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLG 56


>gi|55770876 notch4 preproprotein [Homo sapiens]
          Length = 2003

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 59  AVIRPGGTC-GRECREGLLKGEGRWGIV-------LSVPQHLHPEGTGVSSSGPLGSGAA 110
           A   PG TC  R      L   GR G++       LS P H    G    S+ PL     
Sbjct: 362 ATCAPGSTCIDRVGSFSCLCPPGRTGLLCHLEDMCLSQPCH----GDAQCSTNPLTGSTL 417

Query: 111 SLLATHPPFLARQQHADDTLACQSGPSSCQGG 142
            L           Q  D+ L  Q GPS C+ G
Sbjct: 418 CLCQPGYSGPTCHQDLDECLMAQQGPSPCEHG 449


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,884,248
Number of Sequences: 37866
Number of extensions: 469483
Number of successful extensions: 1420
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 80
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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