Guide to the Human Genome
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Name: LOC100291400 Sequence: fasta or formatted (444aa) NCBI GI: 239747823
Description:

PREDICTED: hypothetical protein XP_002348330

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         38           5
 C cysteine            1.8          8           1
 D aspartate           5.2         23           3
 E glutamate           7.0         31           2
 F phenylalanine       1.8          8           1
 G glycine             9.0         40           2
 H histidine           4.5         20           2
 I isoleucine          1.6          7           2
 K lysine              4.1         18           2
 L leucine             9.7         43           2
 M methionine          1.6          7           1
 N asparagine          3.4         15           1
 P proline             8.6         38           3
 Q glutamine           2.9         13           2
 R arginine            8.6         38           2
 S serine              8.8         39           3
 T threonine           3.2         14           1
 V valine              6.3         28           3
 W tryptophan          2.7         12           2
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348330 
LOC100292390          0.997   PREDICTED: hypothetical protein 
LOC100288057          0.993   PREDICTED: hypothetical protein XP_002342282 
OTUD7A                0.010   OTU domain containing 7A 
LOC100292408          0.009   PREDICTED: hypothetical protein 
LOC100131831          0.008   PREDICTED: hypothetical protein 
LOC100131831          0.008   PREDICTED: hypothetical protein 
LOC100131831          0.008   PREDICTED: hypothetical protein 
C9orf75               0.008   hypothetical protein LOC286262 isoform 2 
C9orf75               0.008   hypothetical protein LOC286262 isoform 1 
CTDP1                 0.008   CTD (carboxy-terminal domain, RNA polymerase II, pol...
LOC100292419          0.008   PREDICTED: hypothetical protein 
LOC100290297          0.008   PREDICTED: hypothetical protein XP_002347742 
LOC100288674          0.008   PREDICTED: hypothetical protein XP_002343540 
SAMD1                 0.008   sterile alpha motif domain containing 1 
LOC100291136          0.008   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.008   PREDICTED: hypothetical protein XP_002343480 
FBXO41                0.008   F-box protein 41 
PAPLN                 0.008   papilin 
KCNH3                 0.007   potassium voltage-gated channel, subfamily H (eag-re...
CACNA1I               0.007   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.007   calcium channel, voltage-dependent, T type, alpha 1I...
LOC100290023          0.006   PREDICTED: hypothetical protein XP_002348147 
LOC100291337          0.006   PREDICTED: hypothetical protein XP_002348329 
LOC100287998          0.006   PREDICTED: hypothetical protein XP_002342281 
PALM3                 0.006   hypothetical protein LOC342979 
CAMKK2                0.006   calcium/calmodulin-dependent protein kinase kinase 2...
CAMKK2                0.006   calcium/calmodulin-dependent protein kinase kinase 2...
LOC100292370          0.006   PREDICTED: hypothetical protein 
LOC388199             0.006   PREDICTED: hypothetical protein LOC388199 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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