Guide to the Human Genome
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Name: LOC100292390 Sequence: fasta or formatted (480aa) NCBI GI: 239753264
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         41           5
 C cysteine            1.7          8           1
 D aspartate           5.0         24           3
 E glutamate           6.9         33           2
 F phenylalanine       2.3         11           2
 G glycine             9.0         43           2
 H histidine           4.4         21           2
 I isoleucine          1.5          7           2
 K lysine              4.0         19           2
 L leucine            10.0         48           2
 M methionine          1.5          7           1
 N asparagine          3.1         15           1
 P proline             9.0         43           3
 Q glutamine           2.7         13           2
 R arginine            9.2         44           2
 S serine              8.1         39           3
 T threonine           3.5         17           1
 V valine              5.8         28           3
 W tryptophan          2.9         14           2
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288057          0.997   PREDICTED: hypothetical protein XP_002342282 
LOC100291400          0.916   PREDICTED: hypothetical protein XP_002348330 
LOC100291136          0.010   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.010   PREDICTED: hypothetical protein XP_002343480 
OTUD7A                0.009   OTU domain containing 7A 
LOC100292447          0.008   PREDICTED: similar to coiled-coil domain containing...
LOC100131738          0.008   PREDICTED: hypothetical protein 
LOC100292629          0.008   PREDICTED: hypothetical protein 
LOC100128142          0.008   PREDICTED: hypothetical protein 
LOC100289960          0.008   PREDICTED: hypothetical protein XP_002346853 
LOC100128142          0.008   PREDICTED: similar to RIKEN cDNA E130309D14 
LOC100286905          0.008   PREDICTED: hypothetical protein XP_002342691 
GON4L                 0.008   gon-4-like isoform a 
GRIN2D                0.008   N-methyl-D-aspartate receptor subunit 2D precursor ...
C9orf75               0.008   hypothetical protein LOC286262 isoform 2 
C9orf75               0.008   hypothetical protein LOC286262 isoform 1 
LOC100292408          0.008   PREDICTED: hypothetical protein 
SEC16A                0.007   SEC16 homolog A 
LOC100131831          0.007   PREDICTED: hypothetical protein 
LOC388199             0.007   PREDICTED: hypothetical protein LOC388199 
LOC100290023          0.007   PREDICTED: hypothetical protein XP_002348147 
LOC100131831          0.007   PREDICTED: hypothetical protein 
LOC100131831          0.007   PREDICTED: hypothetical protein 
LOC388199             0.007   hypothetical protein LOC388199 
CTDP1                 0.007   CTD (carboxy-terminal domain, RNA polymerase II, pol...
LOC100292419          0.007   PREDICTED: hypothetical protein 
LOC100290297          0.007   PREDICTED: hypothetical protein XP_002347742 
LOC100288674          0.007   PREDICTED: hypothetical protein XP_002343540 
COL27A1               0.007   collagen, type XXVII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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