Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239756453
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo
sapiens]
(474 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo ... 983 0.0
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 39 0.013
gi|189217919 protein associated with topoisomerase II homolog 1 ... 37 0.039
gi|239756815 PREDICTED: hypothetical protein [Homo sapiens] 37 0.051
gi|239751287 PREDICTED: hypothetical protein XP_002347786 [Homo ... 37 0.051
gi|239745782 PREDICTED: hypothetical protein XP_002343553 [Homo ... 37 0.051
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 36 0.067
gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo ... 36 0.087
gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo ... 36 0.087
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 35 0.11
gi|26051273 voltage-gated potassium channel, subfamily H, member... 34 0.25
gi|4557729 voltage-gated potassium channel, subfamily H, member ... 34 0.25
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 34 0.33
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 33 0.43
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 33 0.43
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 33 0.43
gi|239755230 PREDICTED: hypothetical protein [Homo sapiens] 33 0.74
gi|239749770 PREDICTED: hypothetical protein [Homo sapiens] 33 0.74
gi|239744029 PREDICTED: hypothetical protein [Homo sapiens] 33 0.74
gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens] 32 0.96
gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens] 32 0.96
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 32 0.96
gi|239755705 PREDICTED: hypothetical protein [Homo sapiens] 32 0.96
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 32 0.96
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 32 0.96
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 32 0.96
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 32 0.96
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 32 1.3
>gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo
sapiens]
Length = 474
Score = 983 bits (2540), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MTVTRRPWVMARLRQPMRAWSRQVQYTFSPAAFSRRVKAGPVSPKGRQLTRVCVHVLVLV 60
MTVTRRPWVMARLRQPMRAWSRQVQYTFSPAAFSRRVKAGPVSPKGRQLTRVCVHVLVLV
Sbjct: 1 MTVTRRPWVMARLRQPMRAWSRQVQYTFSPAAFSRRVKAGPVSPKGRQLTRVCVHVLVLV 60
Query: 61 WGLGLGWQLLVFDLCSLSGPRPGESQGTRTPAVEQTIHASEQRVHLAPRAVLPSLQRLHG 120
WGLGLGWQLLVFDLCSLSGPRPGESQGTRTPAVEQTIHASEQRVHLAPRAVLPSLQRLHG
Sbjct: 61 WGLGLGWQLLVFDLCSLSGPRPGESQGTRTPAVEQTIHASEQRVHLAPRAVLPSLQRLHG 120
Query: 121 LLLLPPGFQALHIGLVAVPTHHSHPLSLGDGPAPAAVQRVVPAGPIHLVPDSLLPLVEER 180
LLLLPPGFQALHIGLVAVPTHHSHPLSLGDGPAPAAVQRVVPAGPIHLVPDSLLPLVEER
Sbjct: 121 LLLLPPGFQALHIGLVAVPTHHSHPLSLGDGPAPAAVQRVVPAGPIHLVPDSLLPLVEER 180
Query: 181 LVYQEAAPGLLHSASRALRTLGLSQALWQGQAGQFLPLAPGLQALLIGRVAVAPHHCGPQ 240
LVYQEAAPGLLHSASRALRTLGLSQALWQGQAGQFLPLAPGLQALLIGRVAVAPHHCGPQ
Sbjct: 181 LVYQEAAPGLLHSASRALRTLGLSQALWQGQAGQFLPLAPGLQALLIGRVAVAPHHCGPQ 240
Query: 241 ASGDGPAPAAQLSMLAALPGWLDHPSLLLNWQDLQGAGEGGGASHLQGQDAVHFLGLGSH 300
ASGDGPAPAAQLSMLAALPGWLDHPSLLLNWQDLQGAGEGGGASHLQGQDAVHFLGLGSH
Sbjct: 241 ASGDGPAPAAQLSMLAALPGWLDHPSLLLNWQDLQGAGEGGGASHLQGQDAVHFLGLGSH 300
Query: 301 PILILVGGCEQHQFGELPGLPGGCRDDVRAWLGGWLLAGLHTLALLLAGLGQGHPGTQGL 360
PILILVGGCEQHQFGELPGLPGGCRDDVRAWLGGWLLAGLHTLALLLAGLGQGHPGTQGL
Sbjct: 301 PILILVGGCEQHQFGELPGLPGGCRDDVRAWLGGWLLAGLHTLALLLAGLGQGHPGTQGL 360
Query: 361 SLRPRSAPSKEPGVQWFQLPSHVSEKRHHHPPHLGHGAGLLGRSPGGKSRNFSGLGPVLT 420
SLRPRSAPSKEPGVQWFQLPSHVSEKRHHHPPHLGHGAGLLGRSPGGKSRNFSGLGPVLT
Sbjct: 361 SLRPRSAPSKEPGVQWFQLPSHVSEKRHHHPPHLGHGAGLLGRSPGGKSRNFSGLGPVLT 420
Query: 421 DGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTSSQPRPAPRERAP 474
DGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTSSQPRPAPRERAP
Sbjct: 421 DGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTSSQPRPAPRERAP 474
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 38.5 bits (88), Expect = 0.013
Identities = 33/101 (32%), Positives = 41/101 (40%), Gaps = 23/101 (22%)
Query: 384 SEKRHHHPPHLGHGAGLLGRSPGGKSRNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCS 443
S++RHH P H RSP +S S ++ P +R RG S CS
Sbjct: 1642 SQRRHHSPSERSH------RSPSERSHRSS------SERRHRSPSQRSHRGPS-ERSHCS 1688
Query: 444 ---------SERRPRGPGRRRHPDPGTSSQPRPAPR-ERAP 474
S+R RGP RRH P S PA R R+P
Sbjct: 1689 PSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSP 1729
Score = 34.7 bits (78), Expect = 0.19
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 384 SEKRHHHPPHLGHG--AGLLGRSPGGKSRNFSGLGPVLTDGSGALPLRRQRRGGSFNLCR 441
SE+RHH P H A RSP +S + ++ S P R+ S
Sbjct: 1706 SERRHHSPSKRSHRSPARRSHRSPSERSHHSP------SERSHHSPSERRHHSPS-ERSH 1758
Query: 442 CS---------SERRPRGPGRRRHPDPGTSSQPRPAPR 470
CS SERR R P RRH P S P+ R
Sbjct: 1759 CSPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPSER 1796
Score = 33.5 bits (75), Expect = 0.43
Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 361 SLRPRSAPSKE----PGVQWFQLPSHVSEKRHHHPPHLG-HGAGLLG-RSPGGKSRNFSG 414
S R +PS++ P + ++ PS ++ H PP H G SP +S
Sbjct: 1586 SQRSHCSPSRKNHSSPSERSWRSPS---QRNHCSPPERSCHSLSERGLHSPSQRSHR--- 1639
Query: 415 LGPVLTDGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTSSQPRPAP-RERA 473
GP + P R R S R SSERR R P +R H P S P+ R R+
Sbjct: 1640 -GP--SQRRHHSPSERSHRSPSERSHRSSSERRHRSPSQRSHRGPSERSHCSPSERRHRS 1696
Query: 474 P 474
P
Sbjct: 1697 P 1697
Score = 32.3 bits (72), Expect = 0.96
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 355 PGTQGLSLRPRSAPSKEPGVQWFQ-LPSHVSEKRHHHPPHLGHGAGLLGRSPGGKSRNFS 413
PGT+ + R R P W + L ++ K H+HP R+P G S
Sbjct: 1506 PGTR-VQARGRILPGSPVKRTWHRHLKDKLTHKEHNHPSFYRE------RTPRGPSER-- 1556
Query: 414 GLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTSSQPRPAPRE-R 472
+ P R R S R S ERR P +R H P + P+ R R
Sbjct: 1557 ---------TRHNPSWRNHRSPSERSQRSSLERRHHSPSQRSHCSPSRKNHSSPSERSWR 1607
Query: 473 AP 474
+P
Sbjct: 1608 SP 1609
Score = 32.0 bits (71), Expect = 1.3
Identities = 25/87 (28%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 384 SEKRHHHPPHLGHGAGLLGRSPGGKSRNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCS 443
SE+RH P H R P + + + S P RR R S
Sbjct: 1690 SERRHRSPSQRSH------RGPSERRHHSP------SKRSHRSPARRSHRSPSERSHHSP 1737
Query: 444 SERRPRGPGRRRHPDPGTSSQPRPAPR 470
SER P RRH P S P+ R
Sbjct: 1738 SERSHHSPSERRHHSPSERSHCSPSER 1764
Score = 30.4 bits (67), Expect = 3.7
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 11/119 (9%)
Query: 358 QGLSLRPRSAPSKE----PGVQWFQLPSHVSEKRHHHPPHLGHGAGLLGRSPGGKSRNFS 413
+G S R +PSK P + + PS E+ HH P H + R R S
Sbjct: 1703 RGPSERRHHSPSKRSHRSPARRSHRSPS---ERSHHSPSERSHHSPSERRHHSPSER--S 1757
Query: 414 GLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTSSQPRPAPRER 472
P ++ S P R+ R S SE+ P R H P + P R R
Sbjct: 1758 HCSP--SERSHCSPSERRHRSPSERRHHSPSEKSHHSPSERSHHSPSERRRHSPLERSR 1814
>gi|189217919 protein associated with topoisomerase II homolog 1
[Homo sapiens]
Length = 770
Score = 37.0 bits (84), Expect = 0.039
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 144 HPLSLGDGPAPAAVQRVVPAGPIHLVPDSLLPLVEERLVYQEAAPGLLHSASRALRTLGL 203
HP P + +QR G L P + P R+ PG + S A+
Sbjct: 248 HPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARV------PGFVGSPLAAM----- 296
Query: 204 SQALWQGQAGQFLPLAPGLQALLIGRVAVAPHHCGPQASGDGPAPAAQ 251
+ L QG+ GQ LP APG +A + P PQ GP P Q
Sbjct: 297 NPKLLQGRVGQMLPPAPGFRAFFSAPPSATP---PPQQHPPGPGPHLQ 341
>gi|239756815 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 36.6 bits (83), Expect = 0.051
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 420 TDGSGALPLRRQRRGGSFNLCRCSSE-RRPRGPGRRRHPDP---GTSSQPRPAPRERAP 474
T G+GA R+R+GG + R SE RR +G G+ R P P G + PAP ER P
Sbjct: 91 TSGTGA---GRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGP 146
>gi|239751287 PREDICTED: hypothetical protein XP_002347786 [Homo
sapiens]
Length = 196
Score = 36.6 bits (83), Expect = 0.051
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 420 TDGSGALPLRRQRRGGSFNLCRCSSE-RRPRGPGRRRHPDP---GTSSQPRPAPRERAP 474
T G+GA R+R+GG + R SE RR +G G+ R P P G + PAP ER P
Sbjct: 91 TSGTGA---GRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGP 146
>gi|239745782 PREDICTED: hypothetical protein XP_002343553 [Homo
sapiens]
Length = 196
Score = 36.6 bits (83), Expect = 0.051
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 420 TDGSGALPLRRQRRGGSFNLCRCSSE-RRPRGPGRRRHPDP---GTSSQPRPAPRERAP 474
T G+GA R+R+GG + R SE RR +G G+ R P P G + PAP ER P
Sbjct: 91 TSGTGA---GRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGP 146
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 36.2 bits (82), Expect = 0.067
Identities = 53/179 (29%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 318 PGLPGGCRDDVRA--WLGG-WLLAGLHTLALLLAGLG------------QGHPGTQGLSL 362
P LP R RA W G W A LLA G + PG +
Sbjct: 45 PILPAPQRPPTRAREWEGAAWAAGATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAP 104
Query: 363 RPRSAPSKEPGVQWFQLPSHVSEK----RHHHPPHLGHGAGLLGRSPGGKSRNFSGLGPV 418
R R + +EPG + + PS ++ PP A L RS G R +GP
Sbjct: 105 RARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRSLARCLPRSVGSCVR--PSVGP- 161
Query: 419 LTDGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTSSQPR---PAPRERAP 474
+LP R RR CRC RRP P G++S PR P RAP
Sbjct: 162 ------SLPRRHCRRH-----CRCHCRRRPLPKPPPLQPRLGSASPPRLAAPLAGSRAP 209
>gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo
sapiens]
Length = 443
Score = 35.8 bits (81), Expect = 0.087
Identities = 86/334 (25%), Positives = 118/334 (35%), Gaps = 78/334 (23%)
Query: 78 SGPRPGESQGTRTPAVEQTIHASEQRVHLAPRAVLPSLQRLHGLLLLPPGFQALHIGLVA 137
+GP E+ +R PA ++ A R HL A P RLHG PP QA L +
Sbjct: 12 TGPDGQEAAESRRPA--PSLRAPRGRTHLPGVARCP--WRLHGAAFAPPASQA---ALAS 64
Query: 138 VPTHHSHPLSLGDGPAPAAVQRV--------VPAGPIHLVPDSLLPLVEERLVYQEAAPG 189
+ P +L A +R AG P+ L A+PG
Sbjct: 65 AGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPTASPG 124
Query: 190 L---LHSASRALRTLGLSQALWQGQAGQFLPLAPGLQALLI--GRVAVAPHHCGPQASGD 244
+H + R G S+ L + G+ P AP + A I G + Q G
Sbjct: 125 CSEEVHGQRSSFRP-GWSRVLAKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQ 183
Query: 245 GPAPAAQLSMLAALPGWLDHPSLLLN---WQDLQ---------------GAGEGGGA--S 284
G GW D P++L + W L AG GGA
Sbjct: 184 G--------------GWDDAPAVLHHPCVWPPLHSCCLTRPVYYPLTRVAAGAQGGAEEQ 229
Query: 285 HLQGQDAVH-------FLGLGSHPILILVGGCEQH-QFGELPGLPGGCRDD---VRAW-- 331
H+ GQ V + HP+ +LVG QH + + P L R+ V+ W
Sbjct: 230 HILGQRGVQKAHGAHPATRIHEHPLQLLVG---QHVAWVQPPQLHDQTREGQLVVQPWRR 286
Query: 332 -LGGWLLAGLHTLALLLAGLGQGHPGTQGLSLRP 364
GG + AG + G G GT G + RP
Sbjct: 287 QRGGGVRAGTGPRS------GDGAFGTLGSAPRP 314
>gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo
sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.087
Identities = 86/334 (25%), Positives = 118/334 (35%), Gaps = 78/334 (23%)
Query: 78 SGPRPGESQGTRTPAVEQTIHASEQRVHLAPRAVLPSLQRLHGLLLLPPGFQALHIGLVA 137
+GP E+ +R PA ++ A R HL A P RLHG PP QA L +
Sbjct: 12 TGPDGQEAAESRRPA--PSLRAPRGRTHLPGVARCP--WRLHGAAFAPPASQA---ALAS 64
Query: 138 VPTHHSHPLSLGDGPAPAAVQRV--------VPAGPIHLVPDSLLPLVEERLVYQEAAPG 189
+ P +L A +R AG P+ L A+PG
Sbjct: 65 AGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPTASPG 124
Query: 190 L---LHSASRALRTLGLSQALWQGQAGQFLPLAPGLQALLI--GRVAVAPHHCGPQASGD 244
+H + R G S+ L + G+ P AP + A I G + Q G
Sbjct: 125 CSEEVHGQRSSFRP-GWSRVLAKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQ 183
Query: 245 GPAPAAQLSMLAALPGWLDHPSLLLN---WQDLQ---------------GAGEGGGA--S 284
G GW D P++L + W L AG GGA
Sbjct: 184 G--------------GWDDAPAVLHHPCVWPPLHSCCLTRPVYYPLTRVAAGAQGGAEEQ 229
Query: 285 HLQGQDAVH-------FLGLGSHPILILVGGCEQH-QFGELPGLPGGCRDD---VRAW-- 331
H+ GQ V + HP+ +LVG QH + + P L R+ V+ W
Sbjct: 230 HILGQRGVQKAHGAHPATRIHEHPLQLLVG---QHVAWVQPPQLHDQTREGQLVVQPWRR 286
Query: 332 -LGGWLLAGLHTLALLLAGLGQGHPGTQGLSLRP 364
GG + AG + G G GT G + RP
Sbjct: 287 QRGGGVRAGTGPRS------GDGAFGTLGSAPRP 314
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 35.4 bits (80), Expect = 0.11
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 403 RSPGGKSRNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGT- 461
R PGG++R+ ++ DG G R GG+ R SS+R P GP R P PG+
Sbjct: 754 RGPGGENRDVEAQR-LVPDGDG----RTSPLGGA----RSSSQRSPVGPAGVRSPRPGSP 804
Query: 462 ----SSQPRPAPRERAP 474
S P AP+ + P
Sbjct: 805 QMQASPSPGIAPKPKTP 821
>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
isoform c [Homo sapiens]
Length = 819
Score = 34.3 bits (77), Expect = 0.25
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 76 SLSGPRPGESQGTRTPAVEQTIHASEQRVHLAPRAVLPSLQRLHGLLLLPPGFQALHIGL 135
S G RP +R A+++ ++ E R+ VL LQR + L+PP + A
Sbjct: 688 SSPGRRPRGDVESRLDALQRQLNRLETRLSADMATVLQLLQRQ--MTLVPPAYSA----- 740
Query: 136 VAVPTHHSHPLSLGDGPAPAAVQRVVPAGPIHLVPDSLLPLVEERLVYQEAAPG 189
V P GP P + ++P P+ + L V + + +E PG
Sbjct: 741 VTTP-----------GPGPTSTSPLLPVSPLPTLTLDSLSQVSQFMACEELPPG 783
>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
isoform a [Homo sapiens]
Length = 1159
Score = 34.3 bits (77), Expect = 0.25
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 76 SLSGPRPGESQGTRTPAVEQTIHASEQRVHLAPRAVLPSLQRLHGLLLLPPGFQALHIGL 135
S G RP +R A+++ ++ E R+ VL LQR + L+PP + A
Sbjct: 1028 SSPGRRPRGDVESRLDALQRQLNRLETRLSADMATVLQLLQRQ--MTLVPPAYSA----- 1080
Query: 136 VAVPTHHSHPLSLGDGPAPAAVQRVVPAGPIHLVPDSLLPLVEERLVYQEAAPG 189
V P GP P + ++P P+ + L V + + +E PG
Sbjct: 1081 VTTP-----------GPGPTSTSPLLPVSPLPTLTLDSLSQVSQFMACEELPPG 1123
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 33.9 bits (76), Expect = 0.33
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 12/124 (9%)
Query: 355 PGTQGLSLRP-RSAPS-----KEPGVQWFQLPSHVSEKRHHHPPHLGHGAGLLGRSPGGK 408
PG G LRP R+ P P + L H +RH P G L SP
Sbjct: 64 PGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPG----GFPLAWGSPQPA 119
Query: 409 SRNFSGLGPVLTDGSGALP--LRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTSSQPR 466
R G L GA P R QR GGS PRG G D G ++
Sbjct: 120 PRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADG 179
Query: 467 PAPR 470
P+
Sbjct: 180 GRPQ 183
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 33.5 bits (75), Expect = 0.43
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 18/84 (21%)
Query: 403 RSPGGKSRNFSGLGPVLTDGSGALPLR-RQRRGGSFN-----------LCRCSSERRPRG 450
R PGG G P G+ A L RQ GG + L RRPRG
Sbjct: 161 RGPGG------GASPRARGGNAAAALAARQAAGGGRSRSAFVAGRDAALACAQLPRRPRG 214
Query: 451 PGRRRHPDPGTSSQPRPAPRERAP 474
G RR + RPAPR R P
Sbjct: 215 AGARRGMRRRLGAGERPAPRPRGP 238
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 33.5 bits (75), Expect = 0.43
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 18/84 (21%)
Query: 403 RSPGGKSRNFSGLGPVLTDGSGALPLR-RQRRGGSFN-----------LCRCSSERRPRG 450
R PGG G P G+ A L RQ GG + L RRPRG
Sbjct: 161 RGPGG------GASPRARGGNAAAALAARQAAGGGRSRSAFVAGRDAALACAQLPRRPRG 214
Query: 451 PGRRRHPDPGTSSQPRPAPRERAP 474
G RR + RPAPR R P
Sbjct: 215 AGARRGMRRRLGAGERPAPRPRGP 238
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 33.5 bits (75), Expect = 0.43
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 214 QFLPLAPGLQALLIG-RVAVAPHHCGP--QASGDGPAPAAQLSMLAAL 258
Q L + GLQ+L ++ +APH GP +ASG+GP PA+ +L L
Sbjct: 891 QVLQMREGLQSLRQAVQLVLAPHREGPCPRASGEGPCPASTSGLLQPL 938
>gi|239755230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 32.7 bits (73), Expect = 0.74
Identities = 34/87 (39%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 392 PHLGHGAGLLGRSPGGKS----RNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERR 447
PH G GA RSPG + R+ G+GP + G RRQRRG CR S ER
Sbjct: 20 PH-GRGAPAGFRSPGSAAAYDPRSAQGMGPARSGG------RRQRRGWVSGRCR-SMER- 70
Query: 448 PRGPGRRRHPDPGTSSQPRPAPRERAP 474
G R P S P P R AP
Sbjct: 71 ----GYRARPG-AQKSFPVPRRRPLAP 92
>gi|239749770 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 32.7 bits (73), Expect = 0.74
Identities = 34/87 (39%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 392 PHLGHGAGLLGRSPGGKS----RNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERR 447
PH G GA RSPG + R+ G+GP + G RRQRRG CR S ER
Sbjct: 20 PH-GRGAPAGFRSPGSAAAYDPRSAQGMGPARSGG------RRQRRGWVSGRCR-SMER- 70
Query: 448 PRGPGRRRHPDPGTSSQPRPAPRERAP 474
G R P S P P R AP
Sbjct: 71 ----GYRARPG-AQKSFPVPRRRPLAP 92
>gi|239744029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 32.7 bits (73), Expect = 0.74
Identities = 34/87 (39%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 392 PHLGHGAGLLGRSPGGKS----RNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERR 447
PH G GA RSPG + R+ G+GP + G RRQRRG CR S ER
Sbjct: 20 PH-GRGAPAGFRSPGSAAAYDPRSAQGMGPARSGG------RRQRRGWVSGRCR-SMER- 70
Query: 448 PRGPGRRRHPDPGTSSQPRPAPRERAP 474
G R P S P P R AP
Sbjct: 71 ----GYRARPG-AQKSFPVPRRRPLAP 92
>gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens]
Length = 978
Score = 32.3 bits (72), Expect = 0.96
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
Query: 114 SLQRLHGLLLLPPGFQALHIGL---VAVPTHHSHPLSLGDGPAPAAVQRVVPAGPIHLVP 170
SL R+ GL + P +A + G V S P D PAPA VQR G +H P
Sbjct: 480 SLDRIGGLPMPPWRSRAEYPGYNPNAGVTRRASDPAQAADRPAPARVQRFKSLGCVHTPP 539
Query: 171 ---------DSLLPLVEERLVYQEAAPGLLHSASRALRTL 201
D LP VY P + +A+ R L
Sbjct: 540 TVAGGGQNFDPYLP----TSVYSPQPPSITENAAMDARGL 575
>gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]
Length = 1106
Score = 32.3 bits (72), Expect = 0.96
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
Query: 114 SLQRLHGLLLLPPGFQALHIGL---VAVPTHHSHPLSLGDGPAPAAVQRVVPAGPIHLVP 170
SL R+ GL + P +A + G V S P D PAPA VQR G +H P
Sbjct: 608 SLDRIGGLPMPPWRSRAEYPGYNPNAGVTRRASDPAQAADRPAPARVQRFKSLGCVHTPP 667
Query: 171 ---------DSLLPLVEERLVYQEAAPGLLHSASRALRTL 201
D LP VY P + +A+ R L
Sbjct: 668 TVAGGGQNFDPYLP----TSVYSPQPPSITENAAMDARGL 703
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 32.3 bits (72), Expect = 0.96
Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 18/131 (13%)
Query: 137 AVPTHHSHPLSLGDGPAPAAVQRVVPAGPIHLVPDSLLPLVEERLVYQEAAPGLLHSASR 196
A P S P SL P+ + Q +VP+ P H P + L S R
Sbjct: 425 AEPKTPSSPPSLASEPSGTSSQHLVPSPPKH-------PRPRDSGSSSPRWSTDLQSRGR 477
Query: 197 ALRTLGLSQALWQGQAGQFLPLAPGLQALLIGRVAVAPHHCGPQASG-DGPAPAAQLSML 255
LR LG W G + P L+AL + P+A G GP PA +
Sbjct: 478 RLRVLG----SWGPGLGDGVAAVPVLRALEVA------SRLSPRAQGCPGPKPAPDAAAR 527
Query: 256 AALPGWLDHPS 266
L HPS
Sbjct: 528 PPRAAELSHPS 538
>gi|239755705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 306
Score = 32.3 bits (72), Expect = 0.96
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 429 RRQRRGGSFNLCRCSSERR-----PRGPGRRRHPD----PGTSSQ-----PRPAPRERAP 474
RR++R G F LC S+ R RG G + P PG SSQ P P P R P
Sbjct: 32 RREQRRGPFRLCSASNSRLLVRLFLRGNGEKVQPQVLAFPGKSSQPPSAGPTPPPSSRPP 91
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 32.3 bits (72), Expect = 0.96
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 403 RSPGGKSRNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTS 462
R G + + G V SG R QRR G R RG GR R P P +
Sbjct: 102 REQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGG---------RGGRGAGRARKPGPDRA 152
Query: 463 SQPRPAPRERAP 474
R P RAP
Sbjct: 153 GAERSLPAHRAP 164
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.96
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 403 RSPGGKSRNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTS 462
R G + + G V SG R QRR G R RG GR R P P +
Sbjct: 105 REQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGG---------RGGRGAGRARKPGPDRA 155
Query: 463 SQPRPAPRERAP 474
R P RAP
Sbjct: 156 GAERSLPAHRAP 167
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.96
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 403 RSPGGKSRNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERRPRGPGRRRHPDPGTS 462
R G + + G V SG R QRR G R RG GR R P P +
Sbjct: 105 REQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGG---------RGGRGAGRARKPGPDRA 155
Query: 463 SQPRPAPRERAP 474
R P RAP
Sbjct: 156 GAERSLPAHRAP 167
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 32.3 bits (72), Expect = 0.96
Identities = 37/127 (29%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 346 LLAGLGQGHPGTQGLSLRPRSAPSKEPGVQWFQLPSHVSEKRHHHPPHLGHGAGLLGR-- 403
LLA LG G L+P P +E G P+ PP L
Sbjct: 651 LLASLGLGR------DLQPPGGPGRERGESPTTPPTPTPAPCPTEPPPSPLICFSLKTPD 704
Query: 404 SPGGKSRNFSGLGPVLTDGSGALPLRRQR-RGGSFNLCRCSSERRPRGPGRRRHPDPGTS 462
SP + LG + S P R + RGG+ + +S P PG R P G
Sbjct: 705 SPPTPAPLLLDLGIPVGQRSAKSPRREEEPRGGTVSPPPGTSRSAPGTPGTPRSPPLGLI 764
Query: 463 SQPRPAP 469
S+PRP+P
Sbjct: 765 SRPRPSP 771
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 32.0 bits (71), Expect = 1.3
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 404 SPGGKSRNFSGLGPV-LTDGSGALPLR-----RQRRGGSFNLCRCSSERRPRGPGRRRHP 457
+PGG +N GLG V L G LP+ R+RR + +RR R RR P
Sbjct: 303 APGGNCKNLRGLGKVRLLCLVGELPVNNPCGPRERRVYPRPPSKSQIQRRIRPKRSRRRP 362
Query: 458 DPGTSSQPRP 467
GT + RP
Sbjct: 363 YQGTPGRDRP 372
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 32.0 bits (71), Expect = 1.3
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 404 SPGGKSRNFSGLGPV-LTDGSGALPLR-----RQRRGGSFNLCRCSSERRPRGPGRRRHP 457
+PGG +N GLG V L G LP+ R+RR + +RR R RR P
Sbjct: 631 APGGNCKNLRGLGKVRLLCLVGELPVNNPCGPRERRVYPRPPSKSQIQRRIRPKRSRRRP 690
Query: 458 DPGTSSQPRP 467
GT + RP
Sbjct: 691 YQGTPGRDRP 700
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 32.0 bits (71), Expect = 1.3
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 404 SPGGKSRNFSGLGPV-LTDGSGALPLR-----RQRRGGSFNLCRCSSERRPRGPGRRRHP 457
+PGG +N GLG V L G LP+ R+RR + +RR R RR P
Sbjct: 631 APGGNCKNLRGLGKVRLLCLVGELPVNNPCGPRERRVYPRPPSKSQIQRRIRPKRSRRRP 690
Query: 458 DPGTSSQPRP 467
GT + RP
Sbjct: 691 YQGTPGRDRP 700
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,415,797
Number of Sequences: 37866
Number of extensions: 1466334
Number of successful extensions: 5355
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 5204
Number of HSP's gapped (non-prelim): 253
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.