Guide to the Human Genome
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Name: LOC100293963 Sequence: fasta or formatted (191aa) NCBI GI: 239756410
Description:

PREDICTED: similar to dynamin 1, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         16           2
 C cysteine            1.0          2           1
 D aspartate           2.1          4           1
 E glutamate          10.5         20           2
 F phenylalanine       3.1          6           1
 G glycine             5.8         11           2
 H histidine           2.6          5           1
 I isoleucine          1.6          3           1
 K lysine              3.1          6           1
 L leucine             9.9         19           2
 M methionine          0.0          0           0
 N asparagine          3.7          7           1
 P proline             2.1          4           1
 Q glutamine           7.3         14           1
 R arginine           14.1         27           3
 S serine             11.5         22           4
 T threonine           5.2         10           1
 V valine              4.7          9           1
 W tryptophan          1.6          3           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to dynamin 1, partial 
LOC100293999          0.861   PREDICTED: similar to dynamin 1, partial 
LOC100289668          0.241   PREDICTED: hypothetical protein XP_002343442, parti...
DNM1                  0.094   dynamin 1 isoform 2 
DNM1                  0.094   dynamin 1 isoform 1 
DNM3                  0.062   dynamin 3 isoform a 
DNM3                  0.062   dynamin 3 isoform b 
DNM2                  0.051   dynamin 2 isoform 4 
DNM2                  0.051   dynamin 2 isoform 2 
DNM2                  0.051   dynamin 2 isoform 1 
DNM2                  0.051   dynamin 2 isoform 3 
LOC730058             0.043   PREDICTED: UPF0621 protein C-like 
LOC730058             0.043   PREDICTED: UPF0621 protein C-like 
LOC730058             0.043   PREDICTED: UPF0621 protein C-like 
LOC100170229          0.031   hypothetical protein LOC100170229 
TCHH                  0.028   trichohyalin 
CCDC88B               0.023   coiled-coil domain containing 88 
LOC727858             0.020   PREDICTED: similar to dynamin 1 
LOC100288331          0.020   PREDICTED: hypothetical protein XP_002343417 
LOC100288161          0.020   PREDICTED: hypothetical protein XP_002343416 
LOC100288036          0.020   PREDICTED: hypothetical protein XP_002343372 
ZNF598                0.020   zinc finger protein 598 
SFRS16                0.020   splicing factor, arginine/serine-rich 16 
LOC100287390          0.017   PREDICTED: hypothetical protein XP_002342820 
LOC100287390          0.017   PREDICTED: hypothetical protein 
AIM1                  0.014   absent in melanoma 1 
MYOC                  0.014   myocilin 
KIRREL3               0.014   kin of IRRE like 3 isoform 2 
KIRREL3               0.014   kin of IRRE like 3 isoform 1 
DDX46                 0.014   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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