Guide to the Human Genome
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Name: LOC730058 Sequence: fasta or formatted (135aa) NCBI GI: 239756350
Description:

PREDICTED: UPF0621 protein C-like

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [155aa] PREDICTED: UPF0621 protein C-like
alt mRNA [135aa] PREDICTED: UPF0621 protein C-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          7           1
 C cysteine            3.0          4           1
 D aspartate           5.2          7           1
 E glutamate           7.4         10           2
 F phenylalanine       2.2          3           1
 G glycine             4.4          6           1
 H histidine           4.4          6           2
 I isoleucine          4.4          6           2
 K lysine              4.4          6           1
 L leucine             8.9         12           2
 M methionine          9.6         13           1
 N asparagine          5.2          7           2
 P proline             4.4          6           1
 Q glutamine           3.7          5           1
 R arginine            0.7          1           1
 S serine              8.1         11           1
 T threonine           8.1         11           2
 V valine              5.9          8           1
 W tryptophan          3.0          4           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: UPF0621 protein C-like 
LOC730058             1.000   PREDICTED: UPF0621 protein C-like 
LOC730058             1.000   PREDICTED: UPF0621 protein C-like 
DNM1                  0.527   dynamin 1 isoform 2 
DNM1                  0.527   dynamin 1 isoform 1 
DNM2                  0.373   dynamin 2 isoform 4 
DNM2                  0.373   dynamin 2 isoform 2 
DNM2                  0.373   dynamin 2 isoform 1 
DNM2                  0.373   dynamin 2 isoform 3 
DNM3                  0.354   dynamin 3 isoform a 
DNM3                  0.354   dynamin 3 isoform b 
LOC727858             0.135   PREDICTED: similar to dynamin 1 
LOC100288331          0.135   PREDICTED: hypothetical protein XP_002343417 
LOC100288161          0.135   PREDICTED: hypothetical protein XP_002343416 
LOC100288036          0.135   PREDICTED: hypothetical protein XP_002343372 
DNM1L                 0.092   dynamin 1-like isoform 1 
DNM1L                 0.092   dynamin 1-like isoform 3 
DNM1L                 0.092   dynamin 1-like isoform 2 
LOC100293999          0.081   PREDICTED: similar to dynamin 1, partial 
LOC100293963          0.058   PREDICTED: similar to dynamin 1, partial 
LOC100289668          0.046   PREDICTED: hypothetical protein XP_002343442, parti...
KIAA1239              0.012   hypothetical protein LOC57495 
KLHL11                0.012   kelch-like 11 
OR5K1                 0.008   olfactory receptor, family 5, subfamily K, member 1...
RABGAP1               0.008   RAB GTPase activating protein 1 
OR5K3                 0.008   olfactory receptor, family 5, subfamily K, member 3 ...
OAS1                  0.008   2',5'-oligoadenylate synthetase 1 isoform 3 
OAS1                  0.008   2',5'-oligoadenylate synthetase 1 isoform 1 
OAS1                  0.008   2',5'-oligoadenylate synthetase 1 isoform 2 
ATP8A2                0.008   ATPase, aminophospholipid transporter-like, Class I...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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