Guide to the Human Genome
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Name: LOC727858 Sequence: fasta or formatted (105aa) NCBI GI: 113425405
Description:

PREDICTED: similar to dynamin 1

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6          9           1
 C cysteine            1.0          1           1
 D aspartate           5.7          6           2
 E glutamate           5.7          6           2
 F phenylalanine       0.0          0           0
 G glycine             5.7          6           2
 H histidine           6.7          7           2
 I isoleucine          3.8          4           2
 K lysine              1.9          2           1
 L leucine             8.6          9           1
 M methionine          5.7          6           1
 N asparagine          2.9          3           1
 P proline            10.5         11           3
 Q glutamine           7.6          8           2
 R arginine            5.7          6           1
 S serine              6.7          7           1
 T threonine           7.6          8           2
 V valine              2.9          3           1
 W tryptophan          1.0          1           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to dynamin 1 
LOC100288331          0.944   PREDICTED: hypothetical protein XP_002343417 
LOC100288161          0.518   PREDICTED: hypothetical protein XP_002343416 
LOC100288036          0.518   PREDICTED: hypothetical protein XP_002343372 
DNM1                  0.492   dynamin 1 isoform 2 
DNM1                  0.492   dynamin 1 isoform 1 
DNM3                  0.340   dynamin 3 isoform a 
DNM3                  0.340   dynamin 3 isoform b 
DNM2                  0.335   dynamin 2 isoform 4 
DNM2                  0.335   dynamin 2 isoform 2 
DNM2                  0.335   dynamin 2 isoform 1 
DNM2                  0.335   dynamin 2 isoform 3 
LOC730058             0.178   PREDICTED: UPF0621 protein C-like 
LOC730058             0.178   PREDICTED: UPF0621 protein C-like 
LOC730058             0.178   PREDICTED: UPF0621 protein C-like 
LOC100293999          0.056   PREDICTED: similar to dynamin 1, partial 
CASKIN2               0.041   cask-interacting protein 2 isoform b 
CASKIN2               0.041   cask-interacting protein 2 isoform a 
LOC100293963          0.036   PREDICTED: similar to dynamin 1, partial 
MKL1                  0.030   megakaryoblastic leukemia 1 protein 
NACAD                 0.025   NAC alpha domain containing 
NACAD                 0.025   PREDICTED: NAC alpha domain containing 
NACAD                 0.025   PREDICTED: NAC alpha domain containing 
NACAD                 0.025   PREDICTED: NAC alpha domain containing 
NACAD                 0.025   PREDICTED: NAC alpha domain containing 
TAF4                  0.025   TBP-associated factor 4 
SLC4A3                0.025   solute carrier family 4, anion exchanger, member 3 ...
SLC4A3                0.025   solute carrier family 4, anion exchanger, member 3 ...
WEE2                  0.025   WEE1 homolog 2 
NKPD1                 0.015   NTPase, KAP family P-loop domain containing 1 isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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