Guide to the Human Genome
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Name: LOC730058 Sequence: fasta or formatted (155aa) NCBI GI: 169208224
Description:

PREDICTED: UPF0621 protein C-like

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [135aa] PREDICTED: UPF0621 protein C-like
alt prot [135aa] PREDICTED: UPF0621 protein C-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         10           1
 C cysteine            3.9          6           2
 D aspartate           4.5          7           1
 E glutamate           7.1         11           2
 F phenylalanine       1.9          3           1
 G glycine             5.2          8           1
 H histidine           4.5          7           2
 I isoleucine          3.9          6           2
 K lysine              4.5          7           1
 L leucine             9.0         14           2
 M methionine          9.0         14           1
 N asparagine          4.5          7           2
 P proline             4.5          7           1
 Q glutamine           3.2          5           1
 R arginine            0.6          1           1
 S serine              7.1         11           1
 T threonine           7.7         12           2
 V valine              7.1         11           1
 W tryptophan          3.2          5           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: UPF0621 protein C-like 
LOC730058             0.855   PREDICTED: UPF0621 protein C-like 
LOC730058             0.855   PREDICTED: UPF0621 protein C-like 
DNM1                  0.451   dynamin 1 isoform 2 
DNM1                  0.451   dynamin 1 isoform 1 
DNM2                  0.319   dynamin 2 isoform 4 
DNM2                  0.319   dynamin 2 isoform 2 
DNM2                  0.319   dynamin 2 isoform 1 
DNM2                  0.319   dynamin 2 isoform 3 
DNM3                  0.303   dynamin 3 isoform a 
DNM3                  0.303   dynamin 3 isoform b 
LOC727858             0.115   PREDICTED: similar to dynamin 1 
LOC100288331          0.115   PREDICTED: hypothetical protein XP_002343417 
LOC100288161          0.115   PREDICTED: hypothetical protein XP_002343416 
LOC100288036          0.115   PREDICTED: hypothetical protein XP_002343372 
DNM1L                 0.079   dynamin 1-like isoform 1 
DNM1L                 0.079   dynamin 1-like isoform 3 
DNM1L                 0.079   dynamin 1-like isoform 2 
LOC100293999          0.069   PREDICTED: similar to dynamin 1, partial 
LOC100293963          0.049   PREDICTED: similar to dynamin 1, partial 
LOC100289668          0.039   PREDICTED: hypothetical protein XP_002343442, parti...
KIAA1239              0.020   hypothetical protein LOC57495 
KLHL11                0.010   kelch-like 11 
RABGAP1               0.007   RAB GTPase activating protein 1 
OR5K1                 0.007   olfactory receptor, family 5, subfamily K, member 1...
OR5K3                 0.007   olfactory receptor, family 5, subfamily K, member 3 ...
OAS1                  0.007   2',5'-oligoadenylate synthetase 1 isoform 3 
OAS1                  0.007   2',5'-oligoadenylate synthetase 1 isoform 1 
OAS1                  0.007   2',5'-oligoadenylate synthetase 1 isoform 2 
AXL                   0.007   AXL receptor tyrosine kinase isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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