Guide to the Human Genome
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Name: LOC100289668 Sequence: fasta or formatted (56aa) NCBI GI: 239745346
Description:

PREDICTED: hypothetical protein XP_002343442, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5          7           2
 C cysteine            0.0          0           0
 D aspartate           3.6          2           1
 E glutamate          12.5          7           1
 F phenylalanine       3.6          2           1
 G glycine             5.4          3           1
 H histidine           3.6          2           1
 I isoleucine          1.8          1           1
 K lysine              3.6          2           1
 L leucine            12.5          7           2
 M methionine          0.0          0           0
 N asparagine          3.6          2           1
 P proline             1.8          1           1
 Q glutamine           7.1          4           1
 R arginine            8.9          5           1
 S serine              7.1          4           1
 T threonine           5.4          3           1
 V valine              5.4          3           1
 W tryptophan          1.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343442, parti... 
LOC100293999          0.977   PREDICTED: similar to dynamin 1, partial 
LOC100293963          0.977   PREDICTED: similar to dynamin 1, partial 
DNM1                  0.276   dynamin 1 isoform 2 
DNM1                  0.276   dynamin 1 isoform 1 
DNM3                  0.138   dynamin 3 isoform a 
DNM3                  0.138   dynamin 3 isoform b 
LOC730058             0.138   PREDICTED: UPF0621 protein C-like 
LOC730058             0.138   PREDICTED: UPF0621 protein C-like 
LOC730058             0.138   PREDICTED: UPF0621 protein C-like 
DNM2                  0.103   dynamin 2 isoform 4 
DNM2                  0.103   dynamin 2 isoform 2 
DNM2                  0.103   dynamin 2 isoform 1 
DNM2                  0.103   dynamin 2 isoform 3 
KIRREL3               0.057   kin of IRRE like 3 isoform 2 
KIRREL3               0.057   kin of IRRE like 3 isoform 1 
TBC1D2                0.023   TBC1 domain family, member 2 
LOC727858             0.011   PREDICTED: similar to dynamin 1 
LOC100288331          0.011   PREDICTED: hypothetical protein XP_002343417 
LOC100288161          0.011   PREDICTED: hypothetical protein XP_002343416 
LOC100288036          0.011   PREDICTED: hypothetical protein XP_002343372 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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