Guide to the Human Genome
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Name: LOC100288331 Sequence: fasta or formatted (103aa) NCBI GI: 239745286
Description:

PREDICTED: hypothetical protein XP_002343417

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8          8           1
 C cysteine            1.0          1           1
 D aspartate           5.8          6           2
 E glutamate           5.8          6           2
 F phenylalanine       0.0          0           0
 G glycine             5.8          6           2
 H histidine           6.8          7           2
 I isoleucine          3.9          4           2
 K lysine              1.9          2           1
 L leucine             8.7          9           1
 M methionine          4.9          5           1
 N asparagine          2.9          3           1
 P proline             9.7         10           3
 Q glutamine           7.8          8           2
 R arginine            5.8          6           1
 S serine              6.8          7           1
 T threonine           8.7          9           2
 V valine              2.9          3           1
 W tryptophan          1.0          1           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343417 
LOC727858             0.964   PREDICTED: similar to dynamin 1 
LOC100288161          0.477   PREDICTED: hypothetical protein XP_002343416 
LOC100288036          0.477   PREDICTED: hypothetical protein XP_002343372 
DNM1                  0.461   dynamin 1 isoform 2 
DNM1                  0.461   dynamin 1 isoform 1 
DNM3                  0.316   dynamin 3 isoform a 
DNM3                  0.316   dynamin 3 isoform b 
DNM2                  0.306   dynamin 2 isoform 4 
DNM2                  0.306   dynamin 2 isoform 2 
DNM2                  0.306   dynamin 2 isoform 1 
DNM2                  0.306   dynamin 2 isoform 3 
LOC730058             0.181   PREDICTED: UPF0621 protein C-like 
LOC730058             0.181   PREDICTED: UPF0621 protein C-like 
LOC730058             0.181   PREDICTED: UPF0621 protein C-like 
LOC100293999          0.057   PREDICTED: similar to dynamin 1, partial 
LOC100293963          0.036   PREDICTED: similar to dynamin 1, partial 
CASKIN2               0.036   cask-interacting protein 2 isoform b 
CASKIN2               0.036   cask-interacting protein 2 isoform a 
MKL1                  0.031   megakaryoblastic leukemia 1 protein 
SLC4A3                0.026   solute carrier family 4, anion exchanger, member 3 ...
SLC4A3                0.026   solute carrier family 4, anion exchanger, member 3 ...
WEE2                  0.021   WEE1 homolog 2 
PRB4                  0.021   proline-rich protein BstNI subfamily 4 precursor [Ho...
XIRP1                 0.016   xin actin-binding repeat containing 1 
TECPR2                0.016   tectonin beta-propeller repeat containing 2 
CAMTA2                0.016   calmodulin binding transcription activator 2 
NACAD                 0.016   NAC alpha domain containing 
NACAD                 0.016   PREDICTED: NAC alpha domain containing 
NACAD                 0.016   PREDICTED: NAC alpha domain containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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