Guide to the Human Genome
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Name: LOC100288161 Sequence: fasta or formatted (63aa) NCBI GI: 239745270
Description:

PREDICTED: hypothetical protein XP_002343416

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          4           1
 C cysteine            1.6          1           1
 D aspartate           6.3          4           2
 E glutamate           9.5          6           2
 F phenylalanine       0.0          0           0
 G glycine             3.2          2           1
 H histidine           7.9          5           2
 I isoleucine          4.8          3           2
 K lysine              1.6          1           1
 L leucine             9.5          6           1
 M methionine          9.5          6           1
 N asparagine          4.8          3           1
 P proline             7.9          5           3
 Q glutamine           6.3          4           2
 R arginine            1.6          1           1
 S serine              4.8          3           1
 T threonine           7.9          5           2
 V valine              3.2          2           1
 W tryptophan          1.6          1           1
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343416 
LOC100288036          1.000   PREDICTED: hypothetical protein XP_002343372 
LOC727858             0.919   PREDICTED: similar to dynamin 1 
LOC100288331          0.829   PREDICTED: hypothetical protein XP_002343417 
DNM1                  0.712   dynamin 1 isoform 2 
DNM1                  0.712   dynamin 1 isoform 1 
DNM2                  0.568   dynamin 2 isoform 4 
DNM2                  0.568   dynamin 2 isoform 2 
DNM2                  0.568   dynamin 2 isoform 1 
DNM2                  0.568   dynamin 2 isoform 3 
DNM3                  0.550   dynamin 3 isoform a 
DNM3                  0.550   dynamin 3 isoform b 
LOC730058             0.315   PREDICTED: UPF0621 protein C-like 
LOC730058             0.315   PREDICTED: UPF0621 protein C-like 
LOC730058             0.315   PREDICTED: UPF0621 protein C-like 
LOC100293999          0.099   PREDICTED: similar to dynamin 1, partial 
LOC100293963          0.063   PREDICTED: similar to dynamin 1, partial 
LTA                   0.018   lymphotoxin alpha precursor 
LTA                   0.018   lymphotoxin alpha precursor 
PRIC285               0.018   PPAR-alpha interacting complex protein 285 isoform ...
PRIC285               0.018   PPAR-alpha interacting complex protein 285 isoform ...
LOC100289668          0.009   PREDICTED: hypothetical protein XP_002343442, parti...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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