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Search of human proteins with 239756183
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756183 PREDICTED: hypothetical protein [Homo sapiens] 471 e-133
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens] 471 e-133
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ... 471 e-133
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 41 0.001
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 41 0.001
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|169202775 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|89034573 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|89033790 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo sap... 38 0.008
gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo sap... 38 0.008
gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo sap... 38 0.008
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|4503907 galanin receptor 3 [Homo sapiens] 37 0.014
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 37 0.018
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 37 0.018
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 36 0.024
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens] 36 0.031
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 36 0.031
gi|239750699 PREDICTED: hypothetical protein XP_002347487 [Homo ... 35 0.053
gi|210147475 zinc finger protein 92 homolog [Homo sapiens] 35 0.053
gi|239756144 PREDICTED: hypothetical protein [Homo sapiens] 35 0.070
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 35 0.070
gi|239745007 PREDICTED: hypothetical protein XP_002343295 [Homo ... 34 0.091
gi|24308065 netrin 5 [Homo sapiens] 34 0.091
gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens] 34 0.091
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
gi|117938318 vacuolar protein sorting 37D [Homo sapiens] 34 0.12
gi|61966721 Tctex1 domain containing 4 [Homo sapiens] 34 0.12
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens] 33 0.16
>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 471 bits (1213), Expect = e-133
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG
Sbjct: 1 MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
Query: 61 RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH
Sbjct: 61 RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
Query: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS
Sbjct: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
Query: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES
Sbjct: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 471 bits (1213), Expect = e-133
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG
Sbjct: 1 MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
Query: 61 RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH
Sbjct: 61 RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
Query: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS
Sbjct: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
Query: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES
Sbjct: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
sapiens]
Length = 229
Score = 471 bits (1213), Expect = e-133
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG
Sbjct: 1 MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
Query: 61 RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH
Sbjct: 61 RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
Query: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS
Sbjct: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
Query: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES
Sbjct: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 40.8 bits (94), Expect = 0.001
Identities = 54/196 (27%), Positives = 75/196 (38%), Gaps = 14/196 (7%)
Query: 40 SPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPA---- 95
S G SAA +RP+G + S A PG+ + PE AGPA
Sbjct: 399 SSGEAVAPPSTSAAALSRPSGAATTTAAGTSATAASATASG-PGSGSAPE--AGPAPGFP 455
Query: 96 FREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQG--ALLLQRRLQRGRRLAAV 153
F W+ P PP P F + +EL L+G L+ RLQ R + +
Sbjct: 456 FPPPWMGMPLPP-PFAFPPMPVPPAGFAGLTPEEL-RALEGHERQHLEARLQSLRNIHTL 513
Query: 154 LQQQRHQLAQVLLQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGT 213
L Q+ Q L + PPRPA + + +A+ A + P A P+
Sbjct: 514 LDAAMLQINQYLTVLASLGPPRPATSVNSTEETATTVVAA---ASSTSIPSSEATTPTPG 570
Query: 214 CSLGAGRGPQPPHCES 229
S A +PP ES
Sbjct: 571 ASPPAPEMERPPAPES 586
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 40.8 bits (94), Expect = 0.001
Identities = 58/206 (28%), Positives = 77/206 (37%), Gaps = 22/206 (10%)
Query: 30 PGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPE 89
P + G A A P A L S A T AG SA PG+ + PE
Sbjct: 396 PPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASG---------PGSGSAPE 446
Query: 90 DLAGPA----FREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQG--ALLLQRR 143
AGPA F W+ P PP P F + +EL L+G L+ R
Sbjct: 447 --AGPAPGFPFPPPWMGMPLPP-PFAFPPMPVPPAGFAGLTPEEL-RALEGHERQHLEAR 502
Query: 144 LQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGP 203
LQ R + +L Q+ Q L + PPRPA + + +A+ A + P
Sbjct: 503 LQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSVNSTEETATTVVAA---ASSTSIP 559
Query: 204 GDVAARPSGTCSLGAGRGPQPPHCES 229
A P+ S A +PP ES
Sbjct: 560 SSEATTPTPGASPPAPEMERPPAPES 585
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 38.9 bits (89), Expect = 0.004
Identities = 37/94 (39%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 24 RGALGAPGR--AVGVARASPG--RRAGLCGASAALGTR--PAGRLRPP-GSAHPGVICSC 76
RG A R A G AR SP RAG A+++ GTR PA RL PP G G
Sbjct: 110 RGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLG--AGS 167
Query: 77 RAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPR 110
RA PG++A P P+ W P P PR
Sbjct: 168 RALRRPGSAALPR---SPSSSRRWAAMPGPGAPR 198
>gi|169202775 PREDICTED: hypothetical protein [Homo sapiens]
Length = 96
Score = 38.5 bits (88), Expect = 0.005
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRP--PGSAHPGVICSCRAPPI 81
R A AP RA R PG R G CG +A++ T PA P P SA G APP+
Sbjct: 23 RVAAPAPPRAPEDFR--PGPRGGPCGLAASVVTIPAPHGLPPVPASAQDGA-----APPV 75
Query: 82 PGTSATPEDLAGPAFREAWL 101
+ P L A + AWL
Sbjct: 76 SSLLSPPRRLPPRALQAAWL 95
>gi|89034573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 96
Score = 38.5 bits (88), Expect = 0.005
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRP--PGSAHPGVICSCRAPPI 81
R A AP RA R PG R G CG +A++ T PA P P SA G APP+
Sbjct: 23 RVAAPAPPRAPEDFR--PGPRGGPCGLAASVVTIPAPHGLPPVPASAQDGA-----APPV 75
Query: 82 PGTSATPEDLAGPAFREAWL 101
+ P L A + AWL
Sbjct: 76 SSLLSPPRRLPPRALQAAWL 95
>gi|89033790 PREDICTED: hypothetical protein [Homo sapiens]
Length = 96
Score = 38.5 bits (88), Expect = 0.005
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRP--PGSAHPGVICSCRAPPI 81
R A AP RA R PG R G CG +A++ T PA P P SA G APP+
Sbjct: 23 RVAAPAPPRAPEDFR--PGPRGGPCGLAASVVTIPAPHGLPPVPASAQDGA-----APPV 75
Query: 82 PGTSATPEDLAGPAFREAWL 101
+ P L A + AWL
Sbjct: 76 SSLLSPPRRLPPRALQAAWL 95
>gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
Length = 327
Score = 37.7 bits (86), Expect = 0.008
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
R LGAP A +RA G R G SA G + G P +CS PP
Sbjct: 38 RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
Query: 83 GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
T + GP +R WLW P P R G R+R L G LL Q
Sbjct: 96 TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
Query: 142 RRLQRGRRLA 151
+ +RL+
Sbjct: 147 WSEEVRKRLS 156
>gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
Length = 327
Score = 37.7 bits (86), Expect = 0.008
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
R LGAP A +RA G R G SA G + G P +CS PP
Sbjct: 38 RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
Query: 83 GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
T + GP +R WLW P P R G R+R L G LL Q
Sbjct: 96 TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
Query: 142 RRLQRGRRLA 151
+ +RL+
Sbjct: 147 WSEEVRKRLS 156
>gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
Length = 327
Score = 37.7 bits (86), Expect = 0.008
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
R LGAP A +RA G R G SA G + G P +CS PP
Sbjct: 38 RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
Query: 83 GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
T + GP +R WLW P P R G R+R L G LL Q
Sbjct: 96 TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
Query: 142 RRLQRGRRLA 151
+ +RL+
Sbjct: 147 WSEEVRKRLS 156
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 37.0 bits (84), Expect = 0.014
Identities = 35/86 (40%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 142 RRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGR--SRRSHPRSLAALASRRR--A 197
R GR LA LQQ R A + V PRPAG + + S AA A RRR A
Sbjct: 98 RHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERA 157
Query: 198 CAGGGPGDVAA--RPSGTCSLGAGRG 221
CAG GD A P T G RG
Sbjct: 158 CAGRSAGDAAGPEAPQPTGGRGCSRG 183
>gi|4503907 galanin receptor 3 [Homo sapiens]
Length = 368
Score = 37.0 bits (84), Expect = 0.014
Identities = 25/51 (49%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 176 PAGRSRRSHPRSLAALASRRRACAG--GGPGDVAARPSGTCSLGAGRGPQP 224
P GR RR R AL R A +G G PGD ARPSG G G+GP+P
Sbjct: 307 PCGRRRRHRARR--ALRRVRPASSGPPGCPGD--ARPSGRLLAGGGQGPEP 353
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 36.6 bits (83), Expect = 0.018
Identities = 71/212 (33%), Positives = 81/212 (38%), Gaps = 36/212 (16%)
Query: 34 VGVARASPGR-RAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPEDLA 92
VG RA PGR R GL GA AALG AG +P R PG+ A P +
Sbjct: 71 VGRRRACPGRGRGGLPGA-AALG---AGAQQPRRR---------RLAQPPGSRA-PLQVG 116
Query: 93 GPAFREAWLWRPCPPRPRTFERGALHQHRVDLR--VRKELAHLLQGALLLQRRLQRGRRL 150
G R A L PPR R A H +R + A L RL RG
Sbjct: 117 GAPRRRAHLTGG-PPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPP 175
Query: 151 AAVLQQQRH---QLAQVLLQHRHVAPPRPAGRSRRSHPRSLAALA-SRRRACAGGGPGD- 205
A R +L +LLQ PP + +S L A A SR CAGGG GD
Sbjct: 176 APAAGLWRAGCTRLRPLLLQ----PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDP 231
Query: 206 ---VAARPSGTCS------LGAGRGPQPPHCE 228
V RP S GP P +CE
Sbjct: 232 GPIVGGRPENEDSPRFPDVPTRPAGPSPFYCE 263
Score = 33.9 bits (76), Expect = 0.12
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 166 LQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAG------ 219
+Q H P ++R R A + RRRAC G G G + G +LGAG
Sbjct: 45 IQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGL----PGAAALGAGAQQPRR 100
Query: 220 -RGPQPP 225
R QPP
Sbjct: 101 RRLAQPP 107
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 36.6 bits (83), Expect = 0.018
Identities = 71/212 (33%), Positives = 81/212 (38%), Gaps = 36/212 (16%)
Query: 34 VGVARASPGR-RAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPEDLA 92
VG RA PGR R GL GA AALG AG +P R PG+ A P +
Sbjct: 71 VGRRRACPGRGRGGLPGA-AALG---AGAQQPRRR---------RLAQPPGSRA-PLQVG 116
Query: 93 GPAFREAWLWRPCPPRPRTFERGALHQHRVDLR--VRKELAHLLQGALLLQRRLQRGRRL 150
G R A L PPR R A H +R + A L RL RG
Sbjct: 117 GAPRRRAHLTGG-PPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPP 175
Query: 151 AAVLQQQRH---QLAQVLLQHRHVAPPRPAGRSRRSHPRSLAALA-SRRRACAGGGPGD- 205
A R +L +LLQ PP + +S L A A SR CAGGG GD
Sbjct: 176 APAAGLWRAGCTRLRPLLLQ----PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDP 231
Query: 206 ---VAARPSGTCS------LGAGRGPQPPHCE 228
V RP S GP P +CE
Sbjct: 232 GPIVGGRPENEDSPRFPDVPTRPAGPSPFYCE 263
Score = 33.9 bits (76), Expect = 0.12
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 166 LQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAG------ 219
+Q H P ++R R A + RRRAC G G G + G +LGAG
Sbjct: 45 IQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGL----PGAAALGAGAQQPRR 100
Query: 220 -RGPQPP 225
R QPP
Sbjct: 101 RRLAQPP 107
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 36.2 bits (82), Expect = 0.024
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 51 SAALGTRPAGRLRPPGSAHPGVICS-CRAPPIPGTSATPED-LAGPAFREAWLWRPCPPR 108
+A L +R G+ PG PG S CR P P + PED GP + L PR
Sbjct: 1297 NAELRSRGWGQQDGPGPPSPGQSPSPCRTSPSPDSLGLPEDPCLGPRNEDGQL----RPR 1352
Query: 109 PRTFERGALHQHRVDLRVRKELAHLLQGALLLQRR 143
P + R A+ H L+ E LQ + +L+RR
Sbjct: 1353 PLSAGRRAVSVHEDQLQAPAERPLRLQRSPVLKRR 1387
>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 35.8 bits (81), Expect = 0.031
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 39 ASPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPED 90
A P R + LCG+ LG R AG PG A P + C+A P P + TP D
Sbjct: 104 ARPCRVSTLCGSR--LGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPD 153
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 35.8 bits (81), Expect = 0.031
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 39 ASPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPED 90
A P R + LCG+ LG R AG PG A P + C+A P P + TP D
Sbjct: 104 ARPCRVSTLCGSR--LGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPD 153
>gi|239750699 PREDICTED: hypothetical protein XP_002347487 [Homo
sapiens]
Length = 155
Score = 35.0 bits (79), Expect = 0.053
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 18/154 (11%)
Query: 42 GRRAGLCGASAALGTRPAGRLRPPGSA---------HPGVICSCRAPPIPGTSATPEDLA 92
GRR C A P G R PG A G + A + G E
Sbjct: 9 GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTVQGPVDKVEVAL 68
Query: 93 GPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLAA 152
G A ++ L R E +HQH +R+R LL R R +RL
Sbjct: 69 GLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLGL 120
Query: 153 VLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
++ +R + +L LQ RH P RS R P
Sbjct: 121 GVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 154
>gi|210147475 zinc finger protein 92 homolog [Homo sapiens]
Length = 416
Score = 35.0 bits (79), Expect = 0.053
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 42 GRRAGLCGASAALGTR------PAGRLRPPGSAHPGVICSCRAPPIPGTSATP 88
GRRA L A G R A RL PGS PG + +PP P T+A P
Sbjct: 358 GRRANLFKHQAVHGARRPAKAETARRLAGPGSTGPGSAVAATSPPRPSTAARP 410
>gi|239756144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 156
Score = 34.7 bits (78), Expect = 0.070
Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 19/155 (12%)
Query: 42 GRRAGLCGASAALGTRPAGRLRPPGSAHPGV-ICSCRAPPIPGTSATP---------EDL 91
GRR C A P G R PG A V + +A P +AT E
Sbjct: 9 GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEVA 68
Query: 92 AGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLA 151
G A ++ L R E +HQH +R+R LL R R +RL
Sbjct: 69 LGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLG 120
Query: 152 AVLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
++ +R + +L LQ RH P RS R P
Sbjct: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 155
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 34.7 bits (78), Expect = 0.070
Identities = 28/85 (32%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 30 PGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVI---CSCR----APPIP 82
P A G+ GR G G RP +P + P CS R PPIP
Sbjct: 228 PSPAPGLTGRGQGRARGAVGLDCGCRPRPCSFGQPDVGSAPSRSLRGCSLRFRNTPPPIP 287
Query: 83 GTSATPEDLAGPAFREAWLWRPCPP 107
G S P P FRE CPP
Sbjct: 288 G-SDQPSSHGRPRFRETGDSEDCPP 311
>gi|239745007 PREDICTED: hypothetical protein XP_002343295 [Homo
sapiens]
Length = 156
Score = 34.3 bits (77), Expect = 0.091
Identities = 42/155 (27%), Positives = 55/155 (35%), Gaps = 19/155 (12%)
Query: 42 GRRAGLCGASAALGTRPAGRLRPPGSAHPGV----------ICSCRAPPIPGTSATPEDL 91
GRR C A P G R PG A V + A + G E
Sbjct: 9 GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAAATTVQGPVDKVEVA 68
Query: 92 AGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLA 151
G A ++ L R E +HQH +R+R LL R R +RL
Sbjct: 69 LGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLG 120
Query: 152 AVLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
++ +R + +L LQ RH P RS R P
Sbjct: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 155
>gi|24308065 netrin 5 [Homo sapiens]
Length = 489
Score = 34.3 bits (77), Expect = 0.091
Identities = 60/222 (27%), Positives = 72/222 (32%), Gaps = 64/222 (28%)
Query: 25 GALGAPGR-------------AVGVARASPGRRAGLCGASA-------ALGTRPAGRLRP 64
GALG P R A R G +AGL A R A R RP
Sbjct: 113 GALGGPERVTFHSTPGPKATVAASHLRVEFGGQAGLAAAGLRGRCQCHGHAARCAARARP 172
Query: 65 PGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPR-PRTFERGALHQHRVD 123
P C CR T+ + P+ R+ W WRP PR P + +QH
Sbjct: 173 PR-------CHCRHH----TTGPGCESCRPSHRD-WPWRPATPRHPHPCLPCSCNQHARR 220
Query: 124 LRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRSRRS 183
R EL L G R V ++ RH A +H H P
Sbjct: 221 CRFNSELFRL------------SGGRSGGVCERCRHHTAG---RHCHYCQP--------G 257
Query: 184 HPRSLAALASRRRACAG------GGPGDVAARPSG--TCSLG 217
R + RRAC G G + SG TC LG
Sbjct: 258 FWRDPSQPIFSRRACRACQCHPIGATGGTCNQTSGQCTCKLG 299
>gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]
Length = 393
Score = 34.3 bits (77), Expect = 0.091
Identities = 46/175 (26%), Positives = 58/175 (33%), Gaps = 32/175 (18%)
Query: 24 RGALGAPGRAVGVARAS------PGRRAG---------LCGASAALGTRPAGRLRPPGSA 68
R AL P + G +A PGR + L GA + P G
Sbjct: 217 RSALRFPSASPGSLKAKQSMAGIPGRESNAPSVPTVSLLPGAPGGNASSRTEAQVPNGQG 276
Query: 69 HPG-VICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVR 127
PG +CS +A P P +A P GP PRT E L V
Sbjct: 277 SPGGCVCSSQASPAPRAAAPPRAARGPT-------------PRTEEAAWAAMALTFLLVL 323
Query: 128 KELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRSRR 182
LA L L R +RG + +L+ R + P R RSRR
Sbjct: 324 LTLATL---CTRLHRNFRRGESIYWGPTADSQDTVAAVLKRRLLQPSRRVKRSRR 375
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 33.9 bits (76), Expect = 0.12
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 166 LQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAG------ 219
+Q H P ++R R A + RRRAC G G G + G +LGAG
Sbjct: 45 IQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGL----PGAAALGAGAQQPRR 100
Query: 220 -RGPQPP 225
R QPP
Sbjct: 101 RRLAQPP 107
>gi|117938318 vacuolar protein sorting 37D [Homo sapiens]
Length = 251
Score = 33.9 bits (76), Expect = 0.12
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 28/123 (22%)
Query: 128 KELAHLLQGALLLQRRL---QRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRP-------- 176
+++ LL G L+ L QRGR LA + + Q +L ++L + A P P
Sbjct: 132 EQMEQLLLGEQSLEAFLPAFQRGRALAHLRRTQAEKLQELLRRRERSAQPAPTSAADPPK 191
Query: 177 -----------AGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGR--GPQ 223
A R + PRSL L SR G PG P G L + R P+
Sbjct: 192 SFPAAAVLPTGAARGPPAVPRSLPPLDSRPVPPLKGSPG----CPLGPAPLLSPRPSQPE 247
Query: 224 PPH 226
PPH
Sbjct: 248 PPH 250
>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
Length = 221
Score = 33.9 bits (76), Expect = 0.12
Identities = 23/54 (42%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 172 APPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPP 225
A P PA SRR LAA SRR + G G G RPS GP PP
Sbjct: 41 AGPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPS--------LGPVPP 86
>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
Length = 195
Score = 33.5 bits (75), Expect = 0.16
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 151 AAVLQQQRHQLAQVLLQHRHVAPPRPAGRSRRSHPRSL--AALASRRRACAGGG----PG 204
A +L +RH+ A H P RPA RR H + A A RR C G G PG
Sbjct: 86 AELLVGERHEFAWRSPAAAH-HPTRPAAPCRRHHQQQQQDQAEARRRERCGGSGVRVAPG 144
Query: 205 DV---------AARPSGTCSLGAGRGPQ 223
AAR GT G G GP+
Sbjct: 145 GSRRGRHGRRGAARAGGTQVRGGGPGPE 172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,523,762
Number of Sequences: 37866
Number of extensions: 746861
Number of successful extensions: 4322
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 4022
Number of HSP's gapped (non-prelim): 599
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.