Guide to the Human Genome
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Name: LOC100287697 Sequence: fasta or formatted (156aa) NCBI GI: 239745007
Description:

PREDICTED: hypothetical protein XP_002343295

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.4         24           5
 C cysteine            1.3          2           1
 D aspartate           1.9          3           1
 E glutamate           5.1          8           1
 F phenylalanine       0.0          0           0
 G glycine            10.9         17           2
 H histidine           4.5          7           2
 I isoleucine          0.0          0           0
 K lysine              0.6          1           1
 L leucine            11.5         18           3
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline             9.0         14           1
 Q glutamine           7.7         12           2
 R arginine           18.6         29           2
 S serine              1.9          3           1
 T threonine           1.3          2           2
 V valine              9.6         15           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343295 
LOC100293777          0.997   PREDICTED: hypothetical protein 
LOC100289837          0.979   PREDICTED: hypothetical protein XP_002347487 
LOC728767             0.042   PREDICTED: hypothetical protein 
LOC728767             0.042   PREDICTED: hypothetical protein 
LOC100293445          0.031   PREDICTED: hypothetical protein 
LOC100291076          0.031   PREDICTED: hypothetical protein XP_002347846 
LOC100288225          0.031   PREDICTED: hypothetical protein 
LOC100288225          0.031   PREDICTED: hypothetical protein XP_002343333 
CCDC57                0.028   coiled-coil domain containing 57 
TBX3                  0.028   T-box 3 protein isoform 2 
TBX3                  0.028   T-box 3 protein isoform 1 
LOC100292124          0.028   PREDICTED: hypothetical protein XP_002346387 
MEPCE                 0.028   bin3, bicoid-interacting 3 
SPRN                  0.028   shadow of prion protein 
LOC100129463          0.024   PREDICTED: hypothetical protein 
LOC100133885          0.024   PREDICTED: hypothetical protein 
LOC100129463          0.024   PREDICTED: hypothetical protein 
LOC100129463          0.024   PREDICTED: hypothetical protein 
LOC100129463          0.024   PREDICTED: hypothetical protein 
LOC100292292          0.021   PREDICTED: hypothetical protein 
LOC100291384          0.021   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.021   PREDICTED: hypothetical protein XP_002343004 
ARMC5                 0.021   armadillo repeat containing 5 isoform b 
ARMC5                 0.021   armadillo repeat containing 5 isoform a 
ZBTB10                0.021   zinc finger and BTB domain containing 10 isoform b ...
ZBTB10                0.021   zinc finger and BTB domain containing 10 isoform a ...
LOC100129932          0.017   PREDICTED: hypothetical protein 
LOC100292082          0.017   PREDICTED: hypothetical protein XP_002345881 
LOC100129932          0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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