Guide to the Human Genome
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Name: LOC100289837 Sequence: fasta or formatted (155aa) NCBI GI: 239750699
Description:

PREDICTED: hypothetical protein XP_002347487

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         23           4
 C cysteine            1.3          2           1
 D aspartate           1.9          3           1
 E glutamate           5.2          8           1
 F phenylalanine       0.0          0           0
 G glycine            11.0         17           2
 H histidine           4.5          7           2
 I isoleucine          0.0          0           0
 K lysine              0.6          1           1
 L leucine            11.6         18           3
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline             9.0         14           1
 Q glutamine           7.7         12           2
 R arginine           18.7         29           2
 S serine              1.9          3           1
 T threonine           1.3          2           2
 V valine              9.7         15           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347487 
LOC100293777          0.982   PREDICTED: hypothetical protein 
LOC100287697          0.982   PREDICTED: hypothetical protein XP_002343295 
LOC100292124          0.042   PREDICTED: hypothetical protein XP_002346387 
LOC100293445          0.035   PREDICTED: hypothetical protein 
LOC100288225          0.035   PREDICTED: hypothetical protein 
LOC100288225          0.035   PREDICTED: hypothetical protein XP_002343333 
LOC728767             0.035   PREDICTED: hypothetical protein 
LOC728767             0.035   PREDICTED: hypothetical protein 
LOC100291076          0.032   PREDICTED: hypothetical protein XP_002347846 
TBX3                  0.032   T-box 3 protein isoform 2 
TBX3                  0.032   T-box 3 protein isoform 1 
MEPCE                 0.028   bin3, bicoid-interacting 3 
LOC100133885          0.025   PREDICTED: hypothetical protein 
LOC728804             0.025   PREDICTED: hypothetical protein 
LOC728804             0.025   PREDICTED: hypothetical protein 
LOC100291634          0.021   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.021   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.021   PREDICTED: hypothetical protein 
ZBTB10                0.021   zinc finger and BTB domain containing 10 isoform b ...
ZBTB10                0.021   zinc finger and BTB domain containing 10 isoform a ...
FOXD2                 0.021   forkhead box D2 
LOC100292292          0.018   PREDICTED: hypothetical protein 
LOC100293776          0.018   PREDICTED: hypothetical protein 
LOC100292082          0.018   PREDICTED: hypothetical protein XP_002345881 
LOC100291384          0.018   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.018   PREDICTED: hypothetical protein XP_002343004 
LOC100288658          0.018   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.018   PREDICTED: hypothetical protein 
MYO18B                0.018   myosin XVIIIB 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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