Guide to the Human Genome
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Name: LOC100293174 Sequence: fasta or formatted (99aa) NCBI GI: 239756009
Description:

PREDICTED: similar to transmembrane phosphoinositide 3-phosphatase and tensin homolog 2, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          4           1
 C cysteine            4.0          4           2
 D aspartate           7.1          7           2
 E glutamate           6.1          6           1
 F phenylalanine       3.0          3           1
 G glycine             6.1          6           2
 H histidine           4.0          4           1
 I isoleucine          6.1          6           1
 K lysine              7.1          7           1
 L leucine             9.1          9           2
 M methionine          3.0          3           1
 N asparagine          5.1          5           1
 P proline             5.1          5           1
 Q glutamine           2.0          2           1
 R arginine            5.1          5           1
 S serine              9.1          9           1
 T threonine           1.0          1           1
 V valine             11.1         11           2
 W tryptophan          1.0          1           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to transmembrane phosphoinositid... 
TPTE2                 0.464   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE2                 0.464   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE2                 0.464   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE                  0.431   transmembrane phosphatase with tensin homology isofo...
TPTE                  0.431   transmembrane phosphatase with tensin homology isofo...
TPTE                  0.431   transmembrane phosphatase with tensin homology isof...
PTEN                  0.155   phosphatase and tensin homolog 
GAK                   0.110   cyclin G associated kinase 
DNAJC6                0.094   DnaJ (Hsp40) homolog, subfamily C, member 6 
LOC100127894          0.088   PREDICTED: hypothetical protein 
TNS3                  0.077   tensin 3 
TNS1                  0.055   tensin 
TENC1                 0.055   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.055   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.055   tensin like C1 domain containing phosphatase isoform...
CACNA1I               0.011   calcium channel, voltage-dependent, T type, alpha 1I...
ITGAL                 0.011   integrin alpha L isoform b precursor 
ITGAL                 0.011   integrin alpha L isoform a precursor 
PKMYT1                0.011   protein kinase Myt1 isoform 2 
TFDP1                 0.011   transcription factor Dp-1 
GRID2                 0.011   glutamate receptor, ionotropic, delta 2 
TTN                   0.006   titin isoform N2-A 
MTMR2                 0.006   myotubularin-related protein 2 isoform 1 
MTMR2                 0.006   myotubularin-related protein 2 isoform 2 
MTMR2                 0.006   myotubularin-related protein 2 isoform 2 
HSPB11                0.006   heat shock protein family B (small), member 11 [Hom...
LOC731220             0.006   hypothetical protein LOC731220 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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