Guide to the Human Genome
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Name: HSPB11 Sequence: fasta or formatted (144aa) NCBI GI: 118343647
Description:

heat shock protein family B (small), member 11

Referenced in:

Heat-Shock Proteins and Chaperonins
Additional Structural Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          6           1
 C cysteine            1.4          2           1
 D aspartate           4.9          7           1
 E glutamate          10.4         15           2
 F phenylalanine       6.2          9           1
 G glycine             4.2          6           1
 H histidine           4.9          7           1
 I isoleucine          9.0         13           2
 K lysine              4.9          7           1
 L leucine             6.2          9           1
 M methionine          1.4          2           1
 N asparagine          2.8          4           1
 P proline             3.5          5           2
 Q glutamine           4.2          6           1
 R arginine            2.8          4           1
 S serine             11.1         16           2
 T threonine           6.9         10           3
 V valine              8.3         12           2
 W tryptophan          1.4          2           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock protein family B (small), member 11 [Hom... 
NISCH                 0.023   nischarin 
TPP2                  0.023   tripeptidyl peptidase II 
DNAH14                0.019   dynein, axonemal, heavy polypeptide 14 isoform 1 [H...
RPRD1B                0.015   Regulation of nuclear pre-mRNA domain containing 1B ...
HYDIN                 0.015   hydrocephalus inducing isoform a 
PPL                   0.011   periplakin 
CUL9                  0.011   p53-associated parkin-like cytoplasmic protein [Homo...
HSD17B12              0.008   hydroxysteroid (17-beta) dehydrogenase 12 
LIG3                  0.008   ligase III, DNA, ATP-dependent isoform beta precurso...
LIG3                  0.008   ligase III, DNA, ATP-dependent isoform alpha precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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