Guide to the Human Genome
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Name: LOC731220 Sequence: fasta or formatted (473aa) NCBI GI: 224586784
Description:

hypothetical protein LOC731220

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         24           2
 C cysteine            2.7         13           1
 D aspartate           5.3         25           2
 E glutamate           7.2         34           7
 F phenylalanine       4.4         21           1
 G glycine             4.0         19           1
 H histidine           1.9          9           1
 I isoleucine          3.4         16           2
 K lysine              6.1         29           2
 L leucine            14.8         70           4
 M methionine          4.2         20           2
 N asparagine          4.0         19           2
 P proline             3.6         17           1
 Q glutamine           5.5         26           2
 R arginine            4.0         19           2
 S serine              8.9         42           2
 T threonine           5.1         24           2
 V valine              6.3         30           1
 W tryptophan          0.8          4           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC731220 
RFX6                  0.086   regulatory factor X, 6 
RFX2                  0.071   regulatory factor X2 isoform b 
RFX2                  0.071   regulatory factor X2 isoform a 
RFX4                  0.066   regulatory factor X4 isoform a 
RFX4                  0.066   regulatory factor X4 isoform b 
RFX4                  0.066   regulatory factor X4 isoform c 
RFX3                  0.066   regulatory factor X3 isoform a 
RFX3                  0.065   regulatory factor X3 isoform b 
RFX1                  0.065   regulatory factor X1 
KNTC1                 0.010   Rough Deal homolog, centromere/kinetochore protein [H...
TAAR5                 0.009   trace amine associated receptor 5 
KDM5C                 0.009   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.009   jumonji, AT rich interactive domain 1C isoform 1 [H...
CCDC24                0.008   coiled-coil domain containing 24 
NAT8B                 0.005   N-acetyltransferase 8B 
SLC30A8               0.005   solute carrier family 30 member 8 
AZI1                  0.005   5-azacytidine induced 1 isoform b 
AZI1                  0.005   5-azacytidine induced 1 isoform a 
LOC100127899          0.005   PREDICTED: hypothetical protein 
LOC100127899          0.005   PREDICTED: hypothetical protein 
LOC100134498          0.005   PREDICTED: hypothetical protein 
C1orf107              0.004   digestive-organ expansion factor homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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