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Search of human proteins with 239755967
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo ... 643 0.0
gi|239750488 PREDICTED: similar to CNOT4 protein, partial [Homo ... 637 0.0
gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo ... 632 0.0
gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a ... 179 2e-45
gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b ... 179 2e-45
gi|122937193 DNB5 [Homo sapiens] 35 0.11
gi|169213703 PREDICTED: hypothetical protein [Homo sapiens] 33 0.33
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 33 0.33
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 33 0.33
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 33 0.44
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 32 0.57
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens] 32 0.75
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 32 0.97
gi|158303333 synaptopodin isoform B [Homo sapiens] 31 1.3
gi|40353727 synaptopodin isoform A [Homo sapiens] 31 1.3
gi|38348310 hypothetical protein LOC341032 [Homo sapiens] 31 1.3
gi|13994300 transmembrane protein 120A [Homo sapiens] 31 1.7
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 31 1.7
gi|221219026 pleckstrin homology-like domain, family B, member 1... 30 2.2
gi|221219024 pleckstrin homology-like domain, family B, member 1... 30 2.2
gi|38424073 pleckstrin homology-like domain, family B, member 1 ... 30 2.2
gi|21361348 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 30 2.2
gi|134304840 KIAA0319 [Homo sapiens] 30 2.8
gi|4503493 early growth response 1 [Homo sapiens] 30 3.7
gi|134152725 receptor tyrosine kinase-like orphan receptor 1 iso... 30 3.7
gi|239740955 PREDICTED: similar to c114 SLIT-like testicular pro... 30 3.7
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 30 3.7
gi|38372911 dual specificity phosphatase 16 [Homo sapiens] 30 3.7
gi|51173735 ras responsive element binding protein 1 isoform 2 [... 30 3.7
gi|51173737 ras responsive element binding protein 1 isoform 1 [... 30 3.7
>gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 643 bits (1658), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL
Sbjct: 1 SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
Query: 61 SLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
SLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE
Sbjct: 61 SLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
Query: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRS 180
QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRS
Sbjct: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRS 180
Query: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF
Sbjct: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
Query: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPXF 300
DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPP F
Sbjct: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPXF 300
Query: 301 QQHLTVYESFFFSRLSNS 318
QQHLTVYESFFFSRLSNS
Sbjct: 301 QQHLTVYESFFFSRLSNS 318
>gi|239750488 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 637 bits (1644), Expect = 0.0
Identities = 314/318 (98%), Positives = 314/318 (98%)
Query: 1 SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL
Sbjct: 1 SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
Query: 61 SLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
SLVCVAGLSQ LADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE
Sbjct: 61 SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
Query: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRS 180
QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSP TGLPKSSPVIPVRS
Sbjct: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS 180
Query: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF
Sbjct: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
Query: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPXF 300
DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPP F
Sbjct: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPRF 300
Query: 301 QQHLTVYESFFFSRLSNS 318
QQHLTVYESFFFSRL NS
Sbjct: 301 QQHLTVYESFFFSRLGNS 318
>gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 632 bits (1629), Expect = 0.0
Identities = 312/318 (98%), Positives = 312/318 (98%)
Query: 1 SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
SRWHQIHTEETVLCPVNRKPCPEG SVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL
Sbjct: 1 SRWHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
Query: 61 SLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
SLVCVAGLSQ LADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE
Sbjct: 61 SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
Query: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRS 180
QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSP TGLPKSSPVIPVRS
Sbjct: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS 180
Query: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF
Sbjct: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
Query: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPXF 300
DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLP RPP F
Sbjct: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPPQF 300
Query: 301 QQHLTVYESFFFSRLSNS 318
QQHLTVYESFFFSRL NS
Sbjct: 301 QQHLTVYESFFFSRLGNS 318
>gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a
[Homo sapiens]
Length = 639
Score = 179 bits (455), Expect = 2e-45
Identities = 123/266 (46%), Positives = 139/266 (52%), Gaps = 59/266 (22%)
Query: 106 FTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSP---------- 155
FTKE+ A +HQEYEQ+LLQE Y LNPN+L LS G D+NK ++ PLQSP
Sbjct: 223 FTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSI 282
Query: 156 -------TTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDN----- 203
SN D PSP GL KS+PVIP+ SS HS + P EGA ESQ LF DN
Sbjct: 283 GNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPN 342
Query: 204 ---------PALPKHLLH-------QSLGTVILKPLD----------FGFSQQPEDVLGF 237
P+ P+ QSL T P+ FG S+QPED LGF
Sbjct: 343 PIPSGLPPFPSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGF 402
Query: 238 DVFDAVWKALAGLTEMELPG-----------QASSSHPTAALGPGSELQPPAAPTNAHSF 286
D FD KALA L E EL Q SSSH T A GPGS PAA TNA+S
Sbjct: 403 DPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSL 462
Query: 287 HSTPPVLPLRPPXFQQHLTVYESFFF 312
+ST VLP R P FQQH VY SF F
Sbjct: 463 NSTFSVLPQRFPQFQQHRAVYNSFSF 488
Score = 104 bits (259), Expect = 1e-22
Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 11/107 (10%)
Query: 3 WHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKS---- 58
WH+I T+E LCP RKP PE P+VY PLSQE LQ+IK+ + +++ RK QKIS++
Sbjct: 42 WHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERK-QKISENRKHL 100
Query: 59 ------CLSLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSST 99
+LV V GLSQ LADP VLK PEYFGK +I +V IN+ST
Sbjct: 101 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 147
Score = 32.3 bits (72), Expect = 0.57
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 245 KALAGLTEMELPGQA-SSSHPTAALGPGSELQ-----PPAAPTNAHSFHSTPP--VLPLR 296
K+L LTEM+ P A S +H +A L P P+N SFHS PP R
Sbjct: 562 KSLQALTEMDGPSAAPSQTHHSAPFSTQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFR 621
Query: 297 PP 298
PP
Sbjct: 622 PP 623
>gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b
[Homo sapiens]
Length = 572
Score = 179 bits (455), Expect = 2e-45
Identities = 123/266 (46%), Positives = 139/266 (52%), Gaps = 59/266 (22%)
Query: 106 FTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSP---------- 155
FTKE+ A +HQEYEQ+LLQE Y LNPN+L LS G D+NK ++ PLQSP
Sbjct: 223 FTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSI 282
Query: 156 -------TTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDN----- 203
SN D PSP GL KS+PVIP+ SS HS + P EGA ESQ LF DN
Sbjct: 283 GNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPN 342
Query: 204 ---------PALPKHLLH-------QSLGTVILKPLD----------FGFSQQPEDVLGF 237
P+ P+ QSL T P+ FG S+QPED LGF
Sbjct: 343 PIPSGLPPFPSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGF 402
Query: 238 DVFDAVWKALAGLTEMELPG-----------QASSSHPTAALGPGSELQPPAAPTNAHSF 286
D FD KALA L E EL Q SSSH T A GPGS PAA TNA+S
Sbjct: 403 DPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSL 462
Query: 287 HSTPPVLPLRPPXFQQHLTVYESFFF 312
+ST VLP R P FQQH VY SF F
Sbjct: 463 NSTFSVLPQRFPQFQQHRAVYNSFSF 488
Score = 104 bits (259), Expect = 1e-22
Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 11/107 (10%)
Query: 3 WHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKS---- 58
WH+I T+E LCP RKP PE P+VY PLSQE LQ+IK+ + +++ RK QKIS++
Sbjct: 42 WHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERK-QKISENRKHL 100
Query: 59 ------CLSLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSST 99
+LV V GLSQ LADP VLK PEYFGK +I +V IN+ST
Sbjct: 101 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 147
>gi|122937193 DNB5 [Homo sapiens]
Length = 748
Score = 34.7 bits (78), Expect = 0.11
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 151 PLQSPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKH 209
PL+ P+ SPS LP S PV+P G + LPS A S + +P PK+
Sbjct: 292 PLRPPSEKRAAMKSPSLPLPPSPPVLP--EEGPGDSLPSHTATNFSSPISPPSPLTPKY 348
>gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 33.1 bits (74), Expect = 0.33
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 168 GLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGF 227
G K + + P S H PS GA +P P+ LL +SLG + PLD GF
Sbjct: 35 GFVKFNLLPPGTGSSHLASAPSTGAST--------SPTRPR-LLPRSLGYPLRHPLDLGF 85
Query: 228 SQQPEDVLGFDVFDAVWKALAGLTEMELPGQA-SSSHPTAALGPGSELQPPAAPTNAHSF 286
Q P V + A A +++ P + +P AL S +PPA +A +F
Sbjct: 86 -QGPASVRPPST-PHLLSASALSAQLDSPARPHPRCYPPFAL---SAPRPPALGASATAF 140
Query: 287 HSTPPVLPLRPPXFQQ 302
S+ P RP F++
Sbjct: 141 RSSSDP-PARPRLFRR 155
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 33.1 bits (74), Expect = 0.33
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 108 KEKSLAA------EHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRD 161
KE+ +AA E Y QQL QE T+ NY L D+ +Q P S + +
Sbjct: 972 KEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSSPPISGEDNKWE 1031
Query: 162 RPSPSTG---LPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTV 218
R S T L +I V + + Q + + + L N L +L TV
Sbjct: 1032 RESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQRQTV 1091
Query: 219 ILK 221
L+
Sbjct: 1092 SLQ 1094
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 33.1 bits (74), Expect = 0.33
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 108 KEKSLAA------EHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRD 161
KE+ +AA E Y QQL QE T+ NY L D+ +Q P S + +
Sbjct: 971 KEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSSPPISGEDNKWE 1030
Query: 162 RPSPSTG---LPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTV 218
R S T L +I V + + Q + + + L N L +L TV
Sbjct: 1031 RESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQRQTV 1090
Query: 219 ILK 221
L+
Sbjct: 1091 SLQ 1093
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 32.7 bits (73), Expect = 0.44
Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 21/167 (12%)
Query: 152 LQSPTTSNRDRPSPSTGLPK------------------SSPVIPVRSSGHSEQLPSEGAG 193
+Q P + P P GLP+ +P++P +S QL ++
Sbjct: 41 MQQPPPPPQPPPPPQAGLPQIIQNAAKLLDKNPFSVSNPNPLLPSPASLQLAQLQAQLTL 100
Query: 194 AESQLL--FLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAVWKALAGLT 251
+L + N +L+Q L V + F + P + G V + A +
Sbjct: 101 HRLKLAQTAVTNNTAAATVLNQVLSKVAMSQPLFNQLRHPSVITGPHGHAGVPQHAAAIP 160
Query: 252 EMELPGQASS-SHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRP 297
P A + S P+ GPG + P P +A H V+P P
Sbjct: 161 STRFPSNAIAFSPPSQTRGPGPSMNLPNQPPSAMVMHPFTGVMPQTP 207
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 32.3 bits (72), Expect = 0.57
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 22/110 (20%)
Query: 102 QNGRFTKEKSLAAEHQEYEQQLLQEFYTLNP-----NYLHLSMGL-------------DD 143
+ GRFT+ + A + QQ +E T +P + S GL +D
Sbjct: 336 RGGRFTRSQEEARKSHLARQQQEKEMKTTSPLEEEEREIKSSQGLKEKSKSPSPPRLTED 395
Query: 144 RNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQ--LPSEG 191
R K ++ L T S + P P SSP P HSE+ P EG
Sbjct: 396 RKKASLVALPEQTASEEETPPPLLTKEASSP--PPHPQLHSEEEIEPMEG 443
>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
Length = 824
Score = 32.0 bits (71), Expect = 0.75
Identities = 54/248 (21%), Positives = 89/248 (35%), Gaps = 31/248 (12%)
Query: 65 VAGLSQSLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSL---AAEHQEYEQ 121
V GLSQ+ P L P ++ + ST +F+ + S+ + E
Sbjct: 454 VPGLSQAATMPAPLPSPSSCDLTQQLLPQTVLQSTPAPMAQFSAQFSMFQTIKDQLEQRT 513
Query: 122 QLLQEFYTLNPNYLHL---SMGLDDRNKIQMI---PLQSPTTSNRDRPSPSTGLPKSSPV 175
++LQ LH + L + +QM P S + S+ RP L + S
Sbjct: 514 RILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSSTQRPEAQQQLQQRSAA 573
Query: 176 IPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQS--LGTVILKPLDFGFSQQPED 233
+ G QLP + + A+ +HLL +S + T KP+ Q
Sbjct: 574 VTQPQLGAGPQLPGQISSAQ---------VTSQHLLRESSVISTQGPKPMRSSQLMQSSG 624
Query: 234 VLGFDVFDAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHS----FHST 289
G + A A LP + + P + S+ QP +P +H +
Sbjct: 625 RSGSSLVSPFSSATAA-----LPPSLNLTTPASTSQDASQCQP--SPDFSHDRQLRLLLS 677
Query: 290 PPVLPLRP 297
P+ P+ P
Sbjct: 678 QPIQPMMP 685
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 31.6 bits (70), Expect = 0.97
Identities = 52/204 (25%), Positives = 71/204 (34%), Gaps = 17/204 (8%)
Query: 94 AINSSTLCQNGRFTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQ 153
A SS + R K S + ++ L T N LH S L N+
Sbjct: 1064 ARRSSYKAKMARRNKRPSAKEGQESKKRSSLFRKITKQSNLLHTSRSLSSLNR------- 1116
Query: 154 SPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQ 213
S ++S+ SP+ GLP SP RS+ S L GA ++S P P
Sbjct: 1117 SLSSSDSLPGSPTHGLPARSPTHSYRSTPDSAYL---GASSQSSSPASSTPNSPASSASH 1173
Query: 214 SLGTVILKPLDFGFSQQPEDVLGFDVFDAVWKALAGLTEMELPGQASSSHPTAALGPGSE 273
+ L L +Q + L+ L P QAS P GS
Sbjct: 1174 HIRPSTLHGLSPKLHRQYRSARCKSAGNI---PLSPLAHTPSPTQASPP-PLPGHTVGSS 1229
Query: 274 LQPPAAPTNAHSFHSTPPVLPLRP 297
+ P HS+PPV+ RP
Sbjct: 1230 HTTQSFPA---KLHSSPPVVRPRP 1250
>gi|158303333 synaptopodin isoform B [Homo sapiens]
Length = 685
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 154 SPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQ 197
+P ++ ++ P+T +P+S P+ ++ + QLPS G G S+
Sbjct: 90 NPPATDVNQNPPATVVPQSLPLSSIQQNSSEAQLPSNGTGPASK 133
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 154 SPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQ 197
+P ++ ++ P+T +P+S P+ ++ + QLPS G G S+
Sbjct: 90 NPPATDVNQNPPATVVPQSLPLSSIQQNSSEAQLPSNGTGPASK 133
>gi|38348310 hypothetical protein LOC341032 [Homo sapiens]
Length = 236
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 256 PGQASSSHPTAAL-------GPGSELQPPAAPTNAHSFHSTPPVLPLRPPXF 300
P ++S+ AAL P + +PPA NA S S P+ PL PP F
Sbjct: 43 PCESSAGQSHAALLEPYFPQEPYGDYRPPALTPNAGSLFSASPLPPLLPPPF 94
>gi|13994300 transmembrane protein 120A [Homo sapiens]
Length = 343
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRS 180
+ L Q+F + + + L++ K+Q S T + + L K P +P +
Sbjct: 17 EDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKCKPSLPAEA 76
Query: 181 SGHSEQLPSEGAGAESQLLFLDNPA-LPK 208
G +++L E E Q LF D A LPK
Sbjct: 77 EGAAQEL--ENQMKERQGLFFDMEAYLPK 103
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 30.8 bits (68), Expect = 1.7
Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 28/164 (17%)
Query: 148 QMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP+ +++ P + L + A A++ N +
Sbjct: 476 QETSFQSPEPINNENPSPTQ--QEAAAEHPQTAEEGESSLTHQEAPAQTPEF--PNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE + ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHPTA------ALGPGSELQPPAAPTNAHSFHSTPP 291
PGQ + HP + L G + P PT HSTPP
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITP--EPTTEVG-HSTPP 631
>gi|221219026 pleckstrin homology-like domain, family B, member 1
isoform b [Homo sapiens]
Length = 1319
Score = 30.4 bits (67), Expect = 2.2
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 26/175 (14%)
Query: 151 PLQSPTTSNR---DRPSPSTGLPKSSPVIPVRSSGHSEQLP---SEGAGAESQLLFLDNP 204
PL SP +S PS P P++P RSS + L S +GA S+ +P
Sbjct: 257 PLSSPASSGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGARSE-----SP 311
Query: 205 ALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAVWKALAG-------LTEMELPG 257
L + H+ + L+ L + P + + A G ++ E P
Sbjct: 312 RLSRKGGHERPPSPGLRGL---LTDSPAATVLAEARRATESPRLGGQLPVVAISLSEYPA 368
Query: 258 QASSSHPTAALGPGS-ELQPPA-APTNAHSFHSTPPVLPLR-PPXFQQHLTVYES 309
+ S PT+ PGS + QPP AP N P P R PP ++ LT S
Sbjct: 369 SGALSQPTSI--PGSPKFQPPVPAPRNKIGTLQDRPPSPFREPPGSERVLTTSPS 421
>gi|221219024 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 30.4 bits (67), Expect = 2.2
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 26/175 (14%)
Query: 151 PLQSPTTSNR---DRPSPSTGLPKSSPVIPVRSSGHSEQLP---SEGAGAESQLLFLDNP 204
PL SP +S PS P P++P RSS + L S +GA S+ +P
Sbjct: 257 PLSSPASSGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGARSE-----SP 311
Query: 205 ALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAVWKALAG-------LTEMELPG 257
L + H+ + L+ L + P + + A G ++ E P
Sbjct: 312 RLSRKGGHERPPSPGLRGL---LTDSPAATVLAEARRATESPRLGGQLPVVAISLSEYPA 368
Query: 258 QASSSHPTAALGPGS-ELQPPA-APTNAHSFHSTPPVLPLR-PPXFQQHLTVYES 309
+ S PT+ PGS + QPP AP N P P R PP ++ LT S
Sbjct: 369 SGALSQPTSI--PGSPKFQPPVPAPRNKIGTLQDRPPSPFREPPGSERVLTTSPS 421
>gi|38424073 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 30.4 bits (67), Expect = 2.2
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 26/175 (14%)
Query: 151 PLQSPTTSNR---DRPSPSTGLPKSSPVIPVRSSGHSEQLP---SEGAGAESQLLFLDNP 204
PL SP +S PS P P++P RSS + L S +GA S+ +P
Sbjct: 257 PLSSPASSGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGARSE-----SP 311
Query: 205 ALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAVWKALAG-------LTEMELPG 257
L + H+ + L+ L + P + + A G ++ E P
Sbjct: 312 RLSRKGGHERPPSPGLRGL---LTDSPAATVLAEARRATESPRLGGQLPVVAISLSEYPA 368
Query: 258 QASSSHPTAALGPGS-ELQPPA-APTNAHSFHSTPPVLPLR-PPXFQQHLTVYES 309
+ S PT+ PGS + QPP AP N P P R PP ++ LT S
Sbjct: 369 SGALSQPTSI--PGSPKFQPPVPAPRNKIGTLQDRPPSPFREPPGSERVLTTSPS 421
>gi|21361348 UTP14, U3 small nucleolar ribonucleoprotein, homolog A
[Homo sapiens]
Length = 771
Score = 30.4 bits (67), Expect = 2.2
Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 15/190 (7%)
Query: 34 EALQKIKDVRDRRRKSRKYQKISKSCLSLVCVAGLSQ--SLADPVVLKGPEYFGKLDEIS 91
++ + K R+++ KS+KY K+ K + + Q + L+ E K +
Sbjct: 234 QSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAALEELEKIEKARMME 293
Query: 92 RVAINSSTLCQNGRFTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSM----------GL 141
R+++ +G++ K K++ A++ +Q +QE + N G
Sbjct: 294 RMSLKHQ---NSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEEEGGT 350
Query: 142 DDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFL 201
+D ++ + + + N D P+P +S + EQLP A S+
Sbjct: 351 EDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEAATQEDPEQLPELEAHGVSESEGE 410
Query: 202 DNPALPKHLL 211
+ P + +L
Sbjct: 411 ERPVAEEEIL 420
>gi|134304840 KIAA0319 [Homo sapiens]
Length = 1072
Score = 30.0 bits (66), Expect = 2.8
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 253 MELPGQASSSHPTAALGPGS-ELQPPAAPTNAHSFHSTPPVLPLRP---PXFQQHLTV 306
+EL P + PGS E P PT+A STP LP+ P P + LTV
Sbjct: 280 LELSSVTVEKSPVLTVTPGSTEHSIPTPPTSAAPSESTPSELPISPTTAPRTVKELTV 337
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 217 TVILKPLDFG--FSQQPEDVLGFDVF-DAVWKALAGLTEMELPGQASSSHPTAALGPGSE 273
T L P+ + FS +P G ++ + ++ ++GL M P +SSS P+ A S
Sbjct: 125 TTRLPPITYTGRFSLEPAPNSGNTLWPEPLFSLVSGLVSMTNPPASSSSAPSPAASSASA 184
Query: 274 LQPP----AAPTNAHS-FHSTPPVLP 294
Q P A P+N S +S P P
Sbjct: 185 SQSPPLSCAVPSNDSSPIYSAAPTFP 210
>gi|134152725 receptor tyrosine kinase-like orphan receptor 1
isoform 1 [Homo sapiens]
Length = 937
Score = 29.6 bits (65), Expect = 3.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 163 PSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKH 209
P P + P S+ S+GH LPS G+ E+ + L + ++P H
Sbjct: 849 PPPKSRSPSSAS--GSTSTGHVTSLPSSGSNQEANIPLLPHMSIPNH 893
>gi|239740955 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 1 [Homo sapiens]
Length = 1635
Score = 29.6 bits (65), Expect = 3.7
Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 28/164 (17%)
Query: 148 QMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP+ +++ P + L + A A++ N +
Sbjct: 476 QETSFQSPEPINNENPSPTQ--QEAAAEHPQTAEEGESSLTHQEAPAQTPEF--PNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESKTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHPTA------ALGPGSELQPPAAPTNAHSFHSTPP 291
PGQ + HP + L G + P PT HSTPP
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITP--EPTTEVG-HSTPP 631
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 2 [Homo sapiens]
Length = 1700
Score = 29.6 bits (65), Expect = 3.7
Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 28/164 (17%)
Query: 148 QMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP+ +++ P + L + A A++ N +
Sbjct: 476 QETSFQSPEPINNENPSPTQ--QEAAAEHPQTAEEGESSLTHQEAPAQTPEF--PNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESKTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHPTA------ALGPGSELQPPAAPTNAHSFHSTPP 291
PGQ + HP + L G + P PT HSTPP
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITP--EPTTEVG-HSTPP 631
>gi|38372911 dual specificity phosphatase 16 [Homo sapiens]
Length = 665
Score = 29.6 bits (65), Expect = 3.7
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 24/173 (13%)
Query: 22 PEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCLSLVCVAGLSQSLADPVVLKGP 81
PE + P++ +KI D+ + K S C+ + C+AG+S+S +
Sbjct: 202 PESHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCVLVHCLAGISRSATIAIAYIMK 261
Query: 82 EYFGKLDEISR-VAINSSTLCQNGRFTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMG 140
LDE R V T+ N F + +YE+++ + P
Sbjct: 262 RMDMSLDEAYRFVKEKRPTISPNFNF------LGQLLDYEKKIKNQTGASGP-------- 307
Query: 141 LDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAG 193
++K++++ L+ P N P+ S G KS + S ++ SE AG
Sbjct: 308 ---KSKLKLLHLEKP---NEPVPAVSEGGQKSETPL---SPPCADSATSEAAG 351
>gi|51173735 ras responsive element binding protein 1 isoform 2 [Homo
sapiens]
Length = 1687
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 248 AGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPXFQQHLTVY 307
AG +E P A LGP L+ P AP A + PP PL+ P Q + +Y
Sbjct: 963 AGSSEQPSPCPAPGPSLPVTLGPSGILESPMAPAPAAT--PEPPAQPLQGP-VQLAVPIY 1019
Query: 308 ESFFFS 313
S S
Sbjct: 1020 SSALVS 1025
>gi|51173737 ras responsive element binding protein 1 isoform 1 [Homo
sapiens]
Length = 1742
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 248 AGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPXFQQHLTVY 307
AG +E P A LGP L+ P AP A + PP PL+ P Q + +Y
Sbjct: 963 AGSSEQPSPCPAPGPSLPVTLGPSGILESPMAPAPAAT--PEPPAQPLQGP-VQLAVPIY 1019
Query: 308 ESFFFS 313
S S
Sbjct: 1020 SSALVS 1025
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,258,291
Number of Sequences: 37866
Number of extensions: 719383
Number of successful extensions: 3095
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 3030
Number of HSP's gapped (non-prelim): 127
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.