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Search of human proteins with 239755719
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755719 PREDICTED: similar to hCG2003440 [Homo sapiens]
(436 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755719 PREDICTED: similar to hCG2003440 [Homo sapiens] 907 0.0
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 39 0.007
gi|27544941 myosin IF [Homo sapiens] 39 0.012
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 37 0.046
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 37 0.046
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens] 36 0.060
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens] 36 0.060
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens] 36 0.060
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] 36 0.078
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] 36 0.078
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 36 0.078
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens] 36 0.078
gi|30520312 melanocortin 2 receptor accessory protein isoform al... 35 0.13
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 35 0.17
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 35 0.17
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 35 0.17
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 35 0.17
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.30
gi|19923973 potassium channel tetramerisation domain containing ... 34 0.30
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens] 34 0.30
gi|239752706 PREDICTED: hypothetical protein [Homo sapiens] 33 0.51
gi|239747242 PREDICTED: hypothetical protein [Homo sapiens] 33 0.51
gi|160707881 formin 2 [Homo sapiens] 33 0.51
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 33 0.51
gi|61966923 forkhead box B2 [Homo sapiens] 33 0.51
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 33 0.51
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens] 33 0.66
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 33 0.66
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 33 0.66
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ... 33 0.66
>gi|239755719 PREDICTED: similar to hCG2003440 [Homo sapiens]
Length = 436
Score = 907 bits (2343), Expect = 0.0
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MDKVCSAQEANSNGRQPEGQGSQDLRPGPGYPYQVSLFQSLELPDSLRGVEASGPHCGWG 60
MDKVCSAQEANSNGRQPEGQGSQDLRPGPGYPYQVSLFQSLELPDSLRGVEASGPHCGWG
Sbjct: 1 MDKVCSAQEANSNGRQPEGQGSQDLRPGPGYPYQVSLFQSLELPDSLRGVEASGPHCGWG 60
Query: 61 FQRKEENNMRGLVTITVDALNGTGMRFAACAPVPGTQPRNKDFRATVPRPPPRLPQQPGP 120
FQRKEENNMRGLVTITVDALNGTGMRFAACAPVPGTQPRNKDFRATVPRPPPRLPQQPGP
Sbjct: 61 FQRKEENNMRGLVTITVDALNGTGMRFAACAPVPGTQPRNKDFRATVPRPPPRLPQQPGP 120
Query: 121 GLEVSSKPQDTGSDPRRAGQVQAGSQLAFLLPLSRLGTPMGLAAGGLTFSGEAASGFTAP 180
GLEVSSKPQDTGSDPRRAGQVQAGSQLAFLLPLSRLGTPMGLAAGGLTFSGEAASGFTAP
Sbjct: 121 GLEVSSKPQDTGSDPRRAGQVQAGSQLAFLLPLSRLGTPMGLAAGGLTFSGEAASGFTAP 180
Query: 181 PRAQPLWGLRGSRRQDACPAEWQGISSPFQGKASQGFVFQDLLFCSWHSSSPRHWRCVGP 240
PRAQPLWGLRGSRRQDACPAEWQGISSPFQGKASQGFVFQDLLFCSWHSSSPRHWRCVGP
Sbjct: 181 PRAQPLWGLRGSRRQDACPAEWQGISSPFQGKASQGFVFQDLLFCSWHSSSPRHWRCVGP 240
Query: 241 ENISLDIRYDPSFPCGRDRPGSRTAGSAAALAALVPGLTASPVQAARREGSSCVRIRPRP 300
ENISLDIRYDPSFPCGRDRPGSRTAGSAAALAALVPGLTASPVQAARREGSSCVRIRPRP
Sbjct: 241 ENISLDIRYDPSFPCGRDRPGSRTAGSAAALAALVPGLTASPVQAARREGSSCVRIRPRP 300
Query: 301 PLLSSLPYAEISTQVLWETVLSLRHPSSSKHKMLLQQGQGPCQPPTRHTRESPACEGATP 360
PLLSSLPYAEISTQVLWETVLSLRHPSSSKHKMLLQQGQGPCQPPTRHTRESPACEGATP
Sbjct: 301 PLLSSLPYAEISTQVLWETVLSLRHPSSSKHKMLLQQGQGPCQPPTRHTRESPACEGATP 360
Query: 361 RAGIRMKTRLHSEHGARDRTQRGRPAREAFTLQTARSTYTPTGLHDSPQVPCHLRHLPPR 420
RAGIRMKTRLHSEHGARDRTQRGRPAREAFTLQTARSTYTPTGLHDSPQVPCHLRHLPPR
Sbjct: 361 RAGIRMKTRLHSEHGARDRTQRGRPAREAFTLQTARSTYTPTGLHDSPQVPCHLRHLPPR 420
Query: 421 PLSVTPSAVHLQKAWN 436
PLSVTPSAVHLQKAWN
Sbjct: 421 PLSVTPSAVHLQKAWN 436
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 39.3 bits (90), Expect = 0.007
Identities = 73/292 (25%), Positives = 99/292 (33%), Gaps = 35/292 (11%)
Query: 110 PPPRLPQQPGPGLEVSSKPQDTGSDPRRA-GQVQAGSQLAFLLPLSRLGTPMGLAAGGLT 168
PP QP PGL S + G P + L LP R P L+A G
Sbjct: 658 PPQATTPQPSPGLASSPEKIVLGQPPSATPTAILTQDSLQMFLPQERSQQP--LSAEGPH 715
Query: 169 FSGEAASGFTAPPRAQP------------LWGLRGSRRQDACPAEWQGISSPFQG---KA 213
S A+ +APP AQ L + PA ++P +G +
Sbjct: 716 LSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASPAPAPQIPAAAPLKGPGPSS 775
Query: 214 SQGFVFQDLLFCSWHSSSPRHWRCVG-----PENISLDIRYDPSFPCGRDRPGSRTAGSA 268
S Q L S H SP R P+++S P PC + G
Sbjct: 776 SPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIF 835
Query: 269 AALAAL-VPGLTASPVQAARREGSSCVRIRPRP-----PLLSSLPYAEISTQVLWETVLS 322
L VP ++P A +R + +P P LP + S+ V + S
Sbjct: 836 VIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETS 895
Query: 323 LRHPSSSKHKMLLQ----QG--QGPCQPPTRHTRESPACEGATPRAGIRMKT 368
R P+ + LQ QG + P PPT H PA P +M T
Sbjct: 896 SRLPAPTPSDFQLQFPPSQGPHKSPTPPPTLHLVPEPAAPPPPPPRTFQMVT 947
>gi|27544941 myosin IF [Homo sapiens]
Length = 1098
Score = 38.5 bits (88), Expect = 0.012
Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 119 GPGLEVSSKPQDTG---SDPRRAGQVQAGSQLAFLLPLSRLGTPMGLAAGGLTFSGEAAS 175
G GL SSKP G PRR+ Q + A + R G P G L +
Sbjct: 916 GDGLPKSSKPTRKGMAKGKPRRSSQAPTRAAPAPPRGMDRNGVPPSARGGPLPLEIMSGG 975
Query: 176 GFTAPPRAQPLWGLRGSRRQDACPA---EWQGISSPFQGKA 213
G PPR P L SRR A P + ++ P QG A
Sbjct: 976 GTHRPPRGPPSTSLGASRRPRARPPSEHNTEFLNVPDQGMA 1016
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 36.6 bits (83), Expect = 0.046
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 88 AACAPVPGTQPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQL 147
AA AP KD A+ P+PPP P PGP L + P T S+ A A + +
Sbjct: 461 AAHAPPAAAAEAPKDGAASAPQPPPTFP--PGPYL-LPPDPPTTDSEKAAAA---AAAVV 514
Query: 148 AFLLPLSRLGTPMGLAAGGLTFSGEAASGFTAP 180
+P+ LG L GG SG SG + P
Sbjct: 515 YGAVPVPLLGA-HPLLLGGAGTSGAGGSGASVP 546
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 36.6 bits (83), Expect = 0.046
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 88 AACAPVPGTQPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQL 147
AA AP KD A+ P+PPP P PGP L + P T S+ A A + +
Sbjct: 461 AAHAPPAAAAEAPKDGAASAPQPPPTFP--PGPYL-LPPDPPTTDSEKAAAA---AAAVV 514
Query: 148 AFLLPLSRLGTPMGLAAGGLTFSGEAASGFTAP 180
+P+ LG L GG SG SG + P
Sbjct: 515 YGAVPVPLLGA-HPLLLGGAGTSGAGGSGASVP 546
>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 36.2 bits (82), Expect = 0.060
Identities = 72/277 (25%), Positives = 96/277 (34%), Gaps = 41/277 (14%)
Query: 43 LPDSLRGVEASGPHCGWGFQRKEENNMRGLVTITVDALNGTGMRFAA----CAPVP---- 94
LP + P GW +R G + G G + + C P P
Sbjct: 110 LPAARAAARYPRPTAGW--RRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGICGPSPLQRL 167
Query: 95 ----GTQPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQLAFL 150
G PR ++ A + R P R+ +PGP + Q+T P+ Q F
Sbjct: 168 GGSTGEAPRPRNREAHLRRKP-RVGLEPGPHSSLPGGKQETAPPPQPVRTTQ-----TFF 221
Query: 151 LPL--SRLGTPMGLAAGGLTFSGEAASGFTAPPRAQPLW--GLR-------GSRRQDACP 199
PL S+LG G AG LT T P A P LR GSR + CP
Sbjct: 222 SPLFSSKLGI-HGDRAGSLTALRPNPDLVTVPLTAHPPVHPPLRSGPPLGAGSRPRALCP 280
Query: 200 AEWQGISSPF---QGKASQGFVFQDLLFCSWHSSSPRHWRCVGPENISLDIRYDPSFPCG 256
A+ +S +G + G Q LL S+ R C G S+ I G
Sbjct: 281 AQTPSQASSSGGGRGTSGAGEGHQHLLITYRVLSNLRRTLCSGGGVASMRI------SVG 334
Query: 257 RDRPGSRTAGSAAALAALVPGLTASPVQAARREGSSC 293
R A A + P A QA+RR + C
Sbjct: 335 RGLRAGPRAPDAGSFWDPNPQTLAPHPQASRRPRAGC 371
>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 36.2 bits (82), Expect = 0.060
Identities = 72/277 (25%), Positives = 96/277 (34%), Gaps = 41/277 (14%)
Query: 43 LPDSLRGVEASGPHCGWGFQRKEENNMRGLVTITVDALNGTGMRFAA----CAPVP---- 94
LP + P GW +R G + G G + + C P P
Sbjct: 110 LPAARAAARYPRPTAGW--RRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGICGPSPLQRL 167
Query: 95 ----GTQPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQLAFL 150
G PR ++ A + R P R+ +PGP + Q+T P+ Q F
Sbjct: 168 GGSTGEAPRPRNREAHLRRKP-RVGLEPGPHSSLPGGKQETAPPPQPVRTTQ-----TFF 221
Query: 151 LPL--SRLGTPMGLAAGGLTFSGEAASGFTAPPRAQPLW--GLR-------GSRRQDACP 199
PL S+LG G AG LT T P A P LR GSR + CP
Sbjct: 222 SPLFSSKLGI-HGDRAGSLTALRPNPDLVTVPLTAHPPVHPPLRSGPPLGAGSRPRALCP 280
Query: 200 AEWQGISSPF---QGKASQGFVFQDLLFCSWHSSSPRHWRCVGPENISLDIRYDPSFPCG 256
A+ +S +G + G Q LL S+ R C G S+ I G
Sbjct: 281 AQTPSQASSSGGGRGTSGAGEGHQHLLITYRVLSNLRRTLCSGGGVASMRI------SVG 334
Query: 257 RDRPGSRTAGSAAALAALVPGLTASPVQAARREGSSC 293
R A A + P A QA+RR + C
Sbjct: 335 RGLRAGPRAPDAGSFWDPNPQTLAPHPQASRRPRAGC 371
>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
Length = 536
Score = 36.2 bits (82), Expect = 0.060
Identities = 72/277 (25%), Positives = 96/277 (34%), Gaps = 41/277 (14%)
Query: 43 LPDSLRGVEASGPHCGWGFQRKEENNMRGLVTITVDALNGTGMRFAA----CAPVP---- 94
LP + P GW +R G + G G + + C P P
Sbjct: 147 LPAARAAARYPRPTAGW--RRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGICGPSPLQRL 204
Query: 95 ----GTQPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQLAFL 150
G PR ++ A + R P R+ +PGP + Q+T P+ Q F
Sbjct: 205 GGSTGEAPRPRNREAHLRRKP-RVGLEPGPHSSLPGGKQETAPPPQPVRTTQ-----TFF 258
Query: 151 LPL--SRLGTPMGLAAGGLTFSGEAASGFTAPPRAQPLW--GLR-------GSRRQDACP 199
PL S+LG G AG LT T P A P LR GSR + CP
Sbjct: 259 SPLFSSKLGI-HGDRAGSLTALRPNPDLVTVPLTAHPPVHPPLRSGPPLGAGSRPRALCP 317
Query: 200 AEWQGISSPF---QGKASQGFVFQDLLFCSWHSSSPRHWRCVGPENISLDIRYDPSFPCG 256
A+ +S +G + G Q LL S+ R C G S+ I G
Sbjct: 318 AQTPSQASSSGGGRGTSGAGEGHQHLLITYRVLSNLRRTLCSGGGVASMRI------SVG 371
Query: 257 RDRPGSRTAGSAAALAALVPGLTASPVQAARREGSSC 293
R A A + P A QA+RR + C
Sbjct: 372 RGLRAGPRAPDAGSFWDPNPQTLAPHPQASRRPRAGC 408
>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 35.8 bits (81), Expect = 0.078
Identities = 61/236 (25%), Positives = 83/236 (35%), Gaps = 41/236 (17%)
Query: 229 SSSPRH--WRCVGPENISLDIRYDPSFPCG--------RDRPGSRTAGSAAALAALVPG- 277
SS PR WRC G SL R +PS P RD A AL PG
Sbjct: 130 SSVPREDDWRCKGDLRRSLGKRENPSSPTVPSESKRALRDDRSQEPTAIAPTPGAL-PGD 188
Query: 278 -----LTASPVQAARREGSSCVR--IRPRPPLLSSLPYAEISTQVLWETVLSLRHPSSSK 330
+P A G S R I P P L Y + + + T L S
Sbjct: 189 RSGAPRAIAPTPGAMLSGRSRARRAIAPTPSALRG--YRSWAHRAIAPTPGCLYSDRSRA 246
Query: 331 HKMLLQQGQGPCQPPTRHTRESPACEGATPRAGIRMKTR----------LHSEHGARDRT 380
H+ + P + T+H S AC P+ G R L + G R R
Sbjct: 247 HRAI-----APARG-TKHGGRSWACRSIAPKPGSLCGDRSQASRAIDPTLGARRGGRSRA 300
Query: 381 QRG-RPAREAFTLQTARSTYTPTGLHDSPQVPCHLRHLPPRPLSVTPSAVHLQKAW 435
R P + +R+ + +P V C +R P+ ++ TP A+ K+W
Sbjct: 301 HRAIAPTPGSLCGNRSRAC---GAIALTPGVLCGVRSRVPKDITPTPGALRGYKSW 353
Score = 35.0 bits (79), Expect = 0.13
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 89 ACAPVPGT--QPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQ 146
A AP PGT R++ RA P P + G+ V+ P D +AG+ A +
Sbjct: 771 AIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDRSQAGRAIAPTP 830
Query: 147 LAFLLPLSRLGTPMGLAAGGL 167
A SR+GT + L AG L
Sbjct: 831 SALFRVGSRVGTGIALPAGAL 851
>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 35.8 bits (81), Expect = 0.078
Identities = 61/236 (25%), Positives = 83/236 (35%), Gaps = 41/236 (17%)
Query: 229 SSSPRH--WRCVGPENISLDIRYDPSFPCG--------RDRPGSRTAGSAAALAALVPG- 277
SS PR WRC G SL R +PS P RD A AL PG
Sbjct: 130 SSVPREDDWRCKGDLRRSLGKRENPSSPTVPSESKRALRDDRSQEPTAIAPTPGAL-PGD 188
Query: 278 -----LTASPVQAARREGSSCVR--IRPRPPLLSSLPYAEISTQVLWETVLSLRHPSSSK 330
+P A G S R I P P L Y + + + T L S
Sbjct: 189 RSGAPRAIAPTPGAMLSGRSRARRAIAPTPSALRG--YRSWAHRAIAPTPGCLYSDRSRA 246
Query: 331 HKMLLQQGQGPCQPPTRHTRESPACEGATPRAGIRMKTR----------LHSEHGARDRT 380
H+ + P + T+H S AC P+ G R L + G R R
Sbjct: 247 HRAI-----APARG-TKHGGRSWACRSIAPKPGSLCGDRSQASRAIDPTLGARRGGRSRA 300
Query: 381 QRG-RPAREAFTLQTARSTYTPTGLHDSPQVPCHLRHLPPRPLSVTPSAVHLQKAW 435
R P + +R+ + +P V C +R P+ ++ TP A+ K+W
Sbjct: 301 HRAIAPTPGSLCGNRSRAC---GAIALTPGVLCGVRSRVPKDITPTPGALRGYKSW 353
Score = 35.0 bits (79), Expect = 0.13
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 89 ACAPVPGT--QPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQ 146
A AP PGT R++ RA P P + G+ V+ P D +AG+ A +
Sbjct: 771 AIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDRSQAGRAIAPTP 830
Query: 147 LAFLLPLSRLGTPMGLAAGGL 167
A SR+GT + L AG L
Sbjct: 831 SALFRVGSRVGTGIALPAGAL 851
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 35.8 bits (81), Expect = 0.078
Identities = 61/236 (25%), Positives = 83/236 (35%), Gaps = 41/236 (17%)
Query: 229 SSSPRH--WRCVGPENISLDIRYDPSFPCG--------RDRPGSRTAGSAAALAALVPG- 277
SS PR WRC G SL R +PS P RD A AL PG
Sbjct: 130 SSVPREDDWRCKGDLRRSLGKRENPSSPTVPSESKRALRDDRSQEPTAIAPTPGAL-PGD 188
Query: 278 -----LTASPVQAARREGSSCVR--IRPRPPLLSSLPYAEISTQVLWETVLSLRHPSSSK 330
+P A G S R I P P L Y + + + T L S
Sbjct: 189 RSGAPRAIAPTPGAMLSGRSRARRAIAPTPSALRG--YRSWAHRAIAPTPGCLYSDRSRA 246
Query: 331 HKMLLQQGQGPCQPPTRHTRESPACEGATPRAGIRMKTR----------LHSEHGARDRT 380
H+ + P + T+H S AC P+ G R L + G R R
Sbjct: 247 HRAI-----APARG-TKHGGRSWACRSIAPKPGSLCGDRSQASRAIDPTLGARRGGRSRA 300
Query: 381 QRG-RPAREAFTLQTARSTYTPTGLHDSPQVPCHLRHLPPRPLSVTPSAVHLQKAW 435
R P + +R+ + +P V C +R P+ ++ TP A+ K+W
Sbjct: 301 HRAIAPTPGSLCGNRSRAC---GAIALTPGVLCGVRSRVPKDITPTPGALRGYKSW 353
Score = 35.0 bits (79), Expect = 0.13
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 89 ACAPVPGT--QPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQ 146
A AP PGT R++ RA P P + G+ V+ P D +AG+ A +
Sbjct: 739 AIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDRSQAGRAIAPTP 798
Query: 147 LAFLLPLSRLGTPMGLAAGGL 167
A SR+GT + L AG L
Sbjct: 799 SALFRVGSRVGTGIALPAGAL 819
>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1934
Score = 35.8 bits (81), Expect = 0.078
Identities = 61/236 (25%), Positives = 83/236 (35%), Gaps = 41/236 (17%)
Query: 229 SSSPRH--WRCVGPENISLDIRYDPSFPCG--------RDRPGSRTAGSAAALAALVPG- 277
SS PR WRC G SL R +PS P RD A AL PG
Sbjct: 130 SSVPREDDWRCKGDLRRSLGKRENPSSPTVPSESKRALRDDRSQEPTAIAPTPGAL-PGD 188
Query: 278 -----LTASPVQAARREGSSCVR--IRPRPPLLSSLPYAEISTQVLWETVLSLRHPSSSK 330
+P A G S R I P P L Y + + + T L S
Sbjct: 189 RSGAPRAIAPTPGAMLSGRSRARRAIAPTPSALRG--YRSWAHRAIAPTPGCLYSDRSRA 246
Query: 331 HKMLLQQGQGPCQPPTRHTRESPACEGATPRAGIRMKTR----------LHSEHGARDRT 380
H+ + P + T+H S AC P+ G R L + G R R
Sbjct: 247 HRAI-----APARG-TKHGGRSWACRSIAPKPGSLCGDRSQASRAIDPTLGARRGGRSRA 300
Query: 381 QRG-RPAREAFTLQTARSTYTPTGLHDSPQVPCHLRHLPPRPLSVTPSAVHLQKAW 435
R P + +R+ + +P V C +R P+ ++ TP A+ K+W
Sbjct: 301 HRAIAPTPGSLCGNRSRAC---GAIALTPGVLCGVRSRVPKDITPTPGALRGYKSW 353
Score = 35.0 bits (79), Expect = 0.13
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 89 ACAPVPGT--QPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQ 146
A AP PGT R++ RA P P + G+ V+ P D +AG+ A +
Sbjct: 645 AIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDRSQAGRAIAPTP 704
Query: 147 LAFLLPLSRLGTPMGLAAGGL 167
A SR+GT + L AG L
Sbjct: 705 SALFRVGSRVGTGIALPAGAL 725
>gi|30520312 melanocortin 2 receptor accessory protein isoform alpha
[Homo sapiens]
Length = 172
Score = 35.0 bits (79), Expect = 0.13
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
Query: 218 VFQDLLFCSWHSS-----SPRHWR-CVGPENISLDIRYDPSFPCGRDRPGSRTAGSAAAL 271
+F LL+ SW +S SP+H + C ++L + PC R+ A S A
Sbjct: 53 LFLILLYMSWSASPQMRNSPKHHQTCPWSHGLNLHLCIQKCLPCHREP----LATSQAQA 108
Query: 272 AALVPGLTASPVQAARREGSSCVRIRPRPPLLSSLPYAEISTQ--VLWETVLS 322
+++ PG P Q R+E S S+LP T +LWE L+
Sbjct: 109 SSVEPGSRTGPDQPLRQESS------------STLPLGGFQTHPTLLWELTLN 149
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 34.7 bits (78), Expect = 0.17
Identities = 39/139 (28%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 51 EASGPHCGWGFQRKEENNM-RGLVTITVDALNGTGMRFAACAPVPGTQPRNKDFRATVPR 109
+ASGP QR+ RG T G+R A V T PR
Sbjct: 153 KASGPARDSAQQRRRPTRRPRG----TRGGARRPGVRGQGAAAVGPTGPR------PTGA 202
Query: 110 PPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQLAFLLPLSRLGTP----MGLAAG 165
PP R PGP + S +G P R AG+ A P S P + +A
Sbjct: 203 PPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSAR 262
Query: 166 GLTFSGEAASGFTAPPRAQ 184
GL ++GE+ + + R Q
Sbjct: 263 GLAWAGESPASHQSERRWQ 281
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 34.7 bits (78), Expect = 0.17
Identities = 39/139 (28%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 51 EASGPHCGWGFQRKEENNM-RGLVTITVDALNGTGMRFAACAPVPGTQPRNKDFRATVPR 109
+ASGP QR+ RG T G+R A V T PR
Sbjct: 153 KASGPARDSAQQRRRPTRRPRG----TRGGARRPGVRGQGAAAVGPTGPR------PTGA 202
Query: 110 PPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQLAFLLPLSRLGTP----MGLAAG 165
PP R PGP + S +G P R AG+ A P S P + +A
Sbjct: 203 PPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSAR 262
Query: 166 GLTFSGEAASGFTAPPRAQ 184
GL ++GE+ + + R Q
Sbjct: 263 GLAWAGESPASHQSERRWQ 281
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 34.7 bits (78), Expect = 0.17
Identities = 39/139 (28%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 51 EASGPHCGWGFQRKEENNM-RGLVTITVDALNGTGMRFAACAPVPGTQPRNKDFRATVPR 109
+ASGP QR+ RG T G+R A V T PR
Sbjct: 153 KASGPARDSAQQRRRPTRRPRG----TRGGARRPGVRGQGAAAVGPTGPR------PTGA 202
Query: 110 PPPRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQLAFLLPLSRLGTP----MGLAAG 165
PP R PGP + S +G P R AG+ A P S P + +A
Sbjct: 203 PPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSAR 262
Query: 166 GLTFSGEAASGFTAPPRAQ 184
GL ++GE+ + + R Q
Sbjct: 263 GLAWAGESPASHQSERRWQ 281
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 34.7 bits (78), Expect = 0.17
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 93 VPGTQPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTG--SDPRRAGQVQAGSQLAFL 150
+PG + A+ P P P QP PG +S P G S P AG + A
Sbjct: 36 LPGDGAARRSGPASAQTPVPPQPPQPPPGPASASGPGAAGPASSPPPAGPGPGPALPAVR 95
Query: 151 LPLSRLGTPMGLAAG 165
L L RLG P AG
Sbjct: 96 LSLVRLGEPDSAGAG 110
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 33.9 bits (76), Expect = 0.30
Identities = 38/116 (32%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 55 PHCGWGFQRKEENNMRGLVT-ITVDALNGTGMRFAACAPVPGTQPRNKDFRATVPR--PP 111
P G G QR ++ T ++ A +G R AP +QP+ K +A P P
Sbjct: 228 PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTP 287
Query: 112 PRLPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQLAFLLPLS----RLGTPMGLA 163
PR P G +SS P T S P A Q QA L S +L TP+ LA
Sbjct: 288 PRKDAAPALG-PLSSSPLATPS-PSAALQSQAPPTLPATPHSSSLTCQLATPLPLA 341
>gi|19923973 potassium channel tetramerisation domain containing 12
[Homo sapiens]
Length = 325
Score = 33.9 bits (76), Expect = 0.30
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 115 PQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQLAFLLPL------SRLGTPMGLAAGGLT 168
PQQPGP G P R G + GS LLPL + G G + L
Sbjct: 132 PQQPGP-----------GPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPTLE 180
Query: 169 FSGEAASGFTAPPRAQPLWGLRGSRRQDACPAEWQG 204
+ + SG A P P L GSRR ++G
Sbjct: 181 LASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRG 216
>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
Length = 1843
Score = 33.9 bits (76), Expect = 0.30
Identities = 49/193 (25%), Positives = 69/193 (35%), Gaps = 14/193 (7%)
Query: 18 EGQGSQDLRPGPGYPYQVSLFQSLELPDSLRGVEASGPHCGWGFQRKEENNMRGLVTITV 77
+ +G+ PGPG P ++ QSL + + EA H + K+
Sbjct: 1035 KSEGATTTPPGPGAPDLLAAMQSLRMATA----EAQSLHQQVLNKHKQGPTPTATSNPIQ 1090
Query: 78 DALNGTGMRFAACAPVPGTQPRNKDFRATVPRPPPRLPQQPGPGLEVSSKPQDTGSDPRR 137
D L G + P G+ PR V R LP+ PG V+ + + P R
Sbjct: 1091 DGLRKAGATQSNIRPGGGSDPRIPAAPRKVSREEQALPRGL-PGGWVTIQDGIYTAHPVR 1149
Query: 138 AGQVQAGSQLAFLLPLSR-LGTPMGLAAGGLTFSGEAASGFTAPPRAQP------LWGLR 190
G QL+ P SR T + + A G S T P R +P WG
Sbjct: 1150 TFDPPGGVQLSQREPQSRHRETALSVQAPRPLQGGPGQS--TGPGREEPGGCTQMAWGPP 1207
Query: 191 GSRRQDACPAEWQ 203
G + CP Q
Sbjct: 1208 GKAMAEVCPGGLQ 1220
>gi|239752706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.51
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 88 AACAPVPGTQPRNKD--FRATVPRPPPRLPQQPG-------PGLEVSSKPQDTGSDPRRA 138
AA AP G++ + A P P P P P PGL +P TGS R+
Sbjct: 52 AAAAPQNGSRSVAEKHLLNAVTPSPCPA-PLAPTSFSPPRRPGLPTPPRPGATGSGARQ- 109
Query: 139 GQVQAGSQLAFLLPLSRLGTPMGLAAGGLTFSGEAASGFTAPPRAQPL 186
Q G AF+ + P G +GGL G A APP PL
Sbjct: 110 ---QRG---AFVRAHATFTQPHGPLSGGLFLKGATAGRNGAPPPGTPL 151
>gi|239747242 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.51
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 88 AACAPVPGTQPRNKD--FRATVPRPPPRLPQQPG-------PGLEVSSKPQDTGSDPRRA 138
AA AP G++ + A P P P P P PGL +P TGS R+
Sbjct: 52 AAAAPQNGSRSVAEKHLLNAVTPSPCPA-PLAPTSFSPPRRPGLPTPPRPGATGSGARQ- 109
Query: 139 GQVQAGSQLAFLLPLSRLGTPMGLAAGGLTFSGEAASGFTAPPRAQPL 186
Q G AF+ + P G +GGL G A APP PL
Sbjct: 110 ---QRG---AFVRAHATFTQPHGPLSGGLFLKGATAGRNGAPPPGTPL 151
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 33.1 bits (74), Expect = 0.51
Identities = 36/117 (30%), Positives = 44/117 (37%), Gaps = 36/117 (30%)
Query: 92 PVPGTQPRNKDFRATVPRPPPR----LPQQPGPGLEVSSKPQDTGSDPRRAGQVQAGSQL 147
P+PG A +P PPP +P P P L P TG P
Sbjct: 1200 PLPG---------AGIPPPPPLPGMGIPPAPAPPLP----PPGTGIPPPP---------- 1236
Query: 148 AFLLPLSRLGTPMGLAAGGLTFSGEAASGFTAPPRAQPLWGL-----RGSRRQDACP 199
LLP+S G P+ G T GF PP L+GL +GSR+Q P
Sbjct: 1237 --LLPVS--GPPLLPQVGSSTLPTPQVCGFLPPPLPSGLFGLGMNQDKGSRKQPIEP 1289
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 33.1 bits (74), Expect = 0.51
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 265 AGSAAALAALVPGLTAS--PVQAARREGSSCVRIRPRPPLLSSLPYAEISTQVLWETVLS 322
A +AAA AA P L A+ P AA + P P P A + S
Sbjct: 509 AAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPA-----PAAAPAVAAAPAAAAS 563
Query: 323 LRHPSSSKHKMLLQQGQGPC---QPPTRHTRESPACEGATPRAGIR 365
S K + L Q PC QPPT+ + +PA + T G++
Sbjct: 564 AAPSHSQKPSVPLIQASRPCPAAQPPTKFIKIAPAIQLRTGSTGLK 609
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 33.1 bits (74), Expect = 0.51
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 106 TVPRPPPRLPQQPGPGLEVSSKPQDTG--SDPRRAGQVQAGSQLAFLLPLSRLG-----T 158
T P+PPP LP QP S+PQ + A V A + A + +G
Sbjct: 186 TAPQPPPHLPSQPPQQPPQQSQPQQPSHPGKMQEAAAVAAAAAAAAAAAVGSVGRLSQFP 245
Query: 159 PMGL--AAGGLTFSGEAASGFTAP 180
P GL AA + + SGF P
Sbjct: 246 PYGLGSAAAAAAAAAASTSGFKHP 269
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 33.1 bits (74), Expect = 0.51
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 239 GPENISLDIRYDPSFPCGRDRPG-SRTAGSAAALAALVPG----LTASPVQAARREGSSC 293
GP LD R+ P R P +R A + L P LT SP+ +
Sbjct: 1160 GPSTFGLDTRWYEPQPRPRPSPRQARRAEPSLHQVVLQPSRLSPLTQSPLSSRTGSPELA 1219
Query: 294 VRIRPRPPLLSSLPYAEISTQ 314
R RPRP LL +EI+ Q
Sbjct: 1220 ARARPRPGLLQQAEMSEITLQ 1240
>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 448
Score = 32.7 bits (73), Expect = 0.66
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 95 GTQPRNKDFRATVPRPPPRLPQQPGPGLEVSS-KPQDTGSDPRRAGQVQAGSQLA 148
G Q R + + +P P P LP P P + + K Q+ G++ G+ Q G LA
Sbjct: 163 GVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAE--TGGEAQGGEALA 215
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 32.7 bits (73), Expect = 0.66
Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 26/141 (18%)
Query: 239 GPENISLD-IRYDPSFPCGRDRPGSRTAGSAAALAALVPGLTASPVQAAR--REGSSCVR 295
GPE+ + +R DP G R G A A L P + AR R S+C
Sbjct: 97 GPEDGDGEHLRRDPEQGLGPPRKAHGVQGGPCAARAEGGALHGRPGRDARPWRLLSACPS 156
Query: 296 IRPRPPLLSSLPYAEISTQVLWETVLSLRHPSSSKHKML----------------LQQGQ 339
RPRP L LP + ++ T+ L P S++ ++ G
Sbjct: 157 GRPRPRPLP-LP---LMLMLMLPTLQPLPPPGSARRPRRGRAGRGGAAPAPPTGSMRAGP 212
Query: 340 GPCQP---PTRHTRESPACEG 357
GP P PT H SPAC G
Sbjct: 213 GPSSPSAAPTSHPPPSPACPG 233
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 32.7 bits (73), Expect = 0.66
Identities = 61/246 (24%), Positives = 88/246 (35%), Gaps = 48/246 (19%)
Query: 91 APVPGTQPRNKDFRATVPRPPPRL--------------------PQQPGPGLEVSSKPQD 130
AP+ QP + RA PPRL PGPG S +
Sbjct: 336 APLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGR 395
Query: 131 TGSDPRRAGQVQAGSQLAFLLPLSRLGTPMGLAAGGLTFSGEAASGF----TAPPRAQPL 186
T R Q Q++ + T A L S ++ SG+ + PP +P
Sbjct: 396 TSPSRPRLPQSPEHQQVS-----ACTATWPSCRAAELPAS-DSPSGWGTWLSTPPPYKPN 449
Query: 187 WGLRGSRRQDACPAEWQG-ISSPFQGKASQGFVFQDLLFCSWH-----SSSPRHWRCV-- 238
GL+G R+ EW+ ++ + QG Q LL C + + + W V
Sbjct: 450 KGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPL 509
Query: 239 -GPENISLDIRYDPSFPCGRDRPGSRTAGSA---AALAALVPGLTASPVQAARREGSSCV 294
+ +R P G R + +A +A A +PGL S A RR GS+
Sbjct: 510 GARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPS---APRRPGSATA 566
Query: 295 RIRPRP 300
PRP
Sbjct: 567 ---PRP 569
>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
sapiens]
Length = 448
Score = 32.7 bits (73), Expect = 0.66
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 95 GTQPRNKDFRATVPRPPPRLPQQPGPGLEVSS-KPQDTGSDPRRAGQVQAGSQLA 148
G Q R + + +P P P LP P P + + K Q+ G++ G+ Q G LA
Sbjct: 163 GVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAE--TGGEAQGGEALA 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,268,035
Number of Sequences: 37866
Number of extensions: 1275351
Number of successful extensions: 6144
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 5910
Number of HSP's gapped (non-prelim): 378
length of query: 436
length of database: 18,247,518
effective HSP length: 105
effective length of query: 331
effective length of database: 14,271,588
effective search space: 4723895628
effective search space used: 4723895628
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.