Guide to the Human Genome
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Name: LOC100292680 Sequence: fasta or formatted (436aa) NCBI GI: 239755719
Description:

PREDICTED: similar to hCG2003440

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         39           3
 C cysteine            2.5         11           1
 D aspartate           3.2         14           1
 E glutamate           3.9         17           2
 F phenylalanine       3.0         13           1
 G glycine             9.6         42           2
 H histidine           2.8         12           1
 I isoleucine          1.6          7           1
 K lysine              2.1          9           1
 L leucine             8.9         39           2
 M methionine          1.4          6           1
 N asparagine          1.8          8           2
 P proline            11.5         50           3
 Q glutamine           6.9         30           2
 R arginine            9.6         42           2
 S serine              9.6         42           3
 T threonine           5.5         24           1
 V valine              4.4         19           1
 W tryptophan          1.6          7           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2003440 
GLTSCR1               0.016   glioma tumor suppressor candidate region gene 1 [Ho...
MYO1F                 0.016   myosin IF 
LOC100133142          0.014   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.014   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC728503             0.012   PREDICTED: hypothetical protein 
LOC728503             0.012   PREDICTED: hypothetical protein 
LOC728503             0.012   PREDICTED: hypothetical protein 
LOC728317             0.012   PREDICTED: hypothetical protein 
LOC728317             0.012   PREDICTED: hypothetical protein 
LOC728317             0.012   PREDICTED: hypothetical protein 
LOC728307             0.012   PREDICTED: hypothetical protein 
MRAP                  0.011   melanocortin 2 receptor accessory protein isoform al...
LOC729570             0.011   PREDICTED: hypothetical protein 
LOC729570             0.011   PREDICTED: hypothetical protein 
LOC729570             0.011   PREDICTED: hypothetical protein 
DMWD                  0.011   dystrophia myotonica-containing WD repeat motif prot...
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
KCTD12                0.010   potassium channel tetramerisation domain containing ...
XIRP1                 0.010   xin actin-binding repeat containing 1 
LOC100292453          0.009   PREDICTED: hypothetical protein 
LOC100288612          0.009   PREDICTED: hypothetical protein 
FMN2                  0.009   formin 2 
FAM48B1               0.009   hypothetical protein LOC100130302 
FOXB2                 0.009   forkhead box B2 
IGSF9B                0.009   immunoglobulin superfamily, member 9B 
LOC100292150          0.009   PREDICTED: hypothetical protein 
LOC100291220          0.009   PREDICTED: hypothetical protein XP_002347633 
LOC100133655          0.009   PREDICTED: hypothetical protein 
LOC100290302          0.009   PREDICTED: hypothetical protein XP_002346480 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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