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Search of human proteins with 239755583
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755583 PREDICTED: hypothetical protein [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755583 PREDICTED: hypothetical protein [Homo sapiens] 346 5e-96
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 35 0.040
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 35 0.040
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens] 32 0.20
gi|73808090 zinc finger protein 207 isoform b [Homo sapiens] 32 0.20
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 31 0.44
gi|239749959 PREDICTED: hypothetical protein [Homo sapiens] 31 0.57
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 30 0.75
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 30 0.75
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 30 0.75
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 30 0.75
gi|48762934 alpha 2 type I collagen [Homo sapiens] 30 0.75
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 30 0.75
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 30 0.75
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 30 0.75
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 30 0.75
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 30 0.75
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 30 0.75
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 30 0.75
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 30 0.75
gi|239757944 PREDICTED: hypothetical protein [Homo sapiens] 30 0.97
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 30 0.97
gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens] 30 0.97
gi|42558258 F-box protein 33 [Homo sapiens] 30 0.97
gi|194306623 immunoglobulin superfamily containing leucine-rich ... 30 0.97
gi|194306621 immunoglobulin superfamily containing leucine-rich ... 30 0.97
gi|39930401 immunoglobulin superfamily containing leucine-rich r... 30 0.97
gi|194306618 immunoglobulin superfamily containing leucine-rich ... 30 0.97
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 30 0.97
gi|25777748 piggyBac transposable element derived 5 [Homo sapiens] 30 0.97
>gi|239755583 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 346 bits (888), Expect = 5e-96
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MLVPDPVCTTEDLLLPHCLVLARKEAKSPSPKSKVRCLFAGLASAIRQLRLGDTKSMVLS 60
MLVPDPVCTTEDLLLPHCLVLARKEAKSPSPKSKVRCLFAGLASAIRQLRLGDTKSMVLS
Sbjct: 1 MLVPDPVCTTEDLLLPHCLVLARKEAKSPSPKSKVRCLFAGLASAIRQLRLGDTKSMVLS 60
Query: 61 EAGVQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLRLG 120
EAGVQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLRLG
Sbjct: 61 EAGVQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLRLG 120
Query: 121 ASSHSCQLLGLKDGLGPGEADLWPGRGSRRGIGQLGQLGLDLPLQVPL 168
ASSHSCQLLGLKDGLGPGEADLWPGRGSRRGIGQLGQLGLDLPLQVPL
Sbjct: 121 ASSHSCQLLGLKDGLGPGEADLWPGRGSRRGIGQLGQLGLDLPLQVPL 168
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 34.7 bits (78), Expect = 0.040
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 7 VCTTEDLLLPHCLVLARKEAKSPSPKSKVRCLFAGLASAIRQLRLGD---TKSMVLSEAG 63
+ TE L H + + + + + K+ ++CL + S+I +L D T+ + S++G
Sbjct: 2847 ISETETLKREHYVAVQLLKEECGTLKAVIQCLRSKEGSSIPELAHSDAYQTREICSSDSG 2906
Query: 64 VQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHH 112
G G L D + G +E S +A FP + GLLR +H+
Sbjct: 2907 SDWGQGIYLTHSQGFDIASEGRGEE---SESATDSFPKKIKGLLRAVHN 2952
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 34.7 bits (78), Expect = 0.040
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 7 VCTTEDLLLPHCLVLARKEAKSPSPKSKVRCLFAGLASAIRQLRLGD---TKSMVLSEAG 63
+ TE L H + + + + + K+ ++CL + S+I +L D T+ + S++G
Sbjct: 2839 ISETETLKREHYVAVQLLKEECGTLKAVIQCLRSKEGSSIPELAHSDAYQTREICSSDSG 2898
Query: 64 VQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHH 112
G G L D + G +E S +A FP + GLLR +H+
Sbjct: 2899 SDWGQGIYLTHSQGFDIASEGRGEE---SESATDSFPKKIKGLLRAVHN 2944
>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
Length = 494
Score = 32.3 bits (72), Expect = 0.20
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 74 PGGPLDGGAPG--PSQEPMESLAAGL--GFPPRWSGLLRGLHHNPRHLRLGASSHSCQLL 129
PG P GAPG P P+ L G PP G+ GLHH ++ + + +
Sbjct: 145 PGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPM 204
Query: 130 GLKDGLGPGEADLWPG 145
G GPG L PG
Sbjct: 205 GGMMPPGPGIPPLMPG 220
>gi|73808090 zinc finger protein 207 isoform b [Homo sapiens]
Length = 463
Score = 32.3 bits (72), Expect = 0.20
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 74 PGGPLDGGAPG--PSQEPMESLAAGL--GFPPRWSGLLRGLHHNPRHLRLGASSHSCQLL 129
PG P GAPG P P+ L G PP G+ GLHH ++ + + +
Sbjct: 145 PGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPM 204
Query: 130 GLKDGLGPGEADLWPG 145
G GPG L PG
Sbjct: 205 GGMMPPGPGIPPLMPG 220
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 31.2 bits (69), Expect = 0.44
Identities = 34/102 (33%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 63 GVQEGGGASLGPGGPLDGGAP--GPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLRLG 120
G E G S GPG P +G AP PSQ+ SLA G P S P ++G
Sbjct: 682 GSSESPG-SQGPGSP-EGSAPLEPPSQQGCRSLAWG---EPAGSRSCPLPAPTPAPFKVG 736
Query: 121 ASS-------HSCQLLGLKDGLGPGEADLWPGRGSRRGIGQL 155
A S H L G PG A+ PGR + +G +
Sbjct: 737 ALSTEVLGRQHRAALAGRSLSSPPGRANQVPGRPRKPSLGAI 778
>gi|239749959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 959
Score = 30.8 bits (68), Expect = 0.57
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 4 PDPVCTTEDLLLPHCLVLARKEAKSPSP-KSKVRCLFAGLASAIRQLRLGDTKSMVLSEA 62
P+P T LLP R P P ++ +CL + S + G M+++E
Sbjct: 530 PEPGPTRLQCLLP------RSTGTGPEPGPTRFQCLLSAACSPGAAVGAGPAGRMLMAEP 583
Query: 63 GVQEGGGASLGPGGPL 78
V GGG LG G L
Sbjct: 584 LVTRGGGNRLGEGTTL 599
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 30.4 bits (67), Expect = 0.75
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 67 GGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLR 118
GGG GPGGP PGP E M G G P + +G H R R
Sbjct: 555 GGGRRGGPGGP-----PGPLMEQMGGRRGGRGGPGKMD---KGEHRQERRDR 598
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 30.4 bits (67), Expect = 0.75
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 67 GGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLR 118
GGG GPGGP PGP E M G G P + +G H R R
Sbjct: 610 GGGRRGGPGGP-----PGPLMEQMGGRRGGRGGPGKMD---KGEHRQERRDR 653
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 30.4 bits (67), Expect = 0.75
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 67 GGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLR 118
GGG GPGGP PGP E M G G P + +G H R R
Sbjct: 616 GGGRRGGPGGP-----PGPLMEQMGGRRGGRGGPGKMD---KGEHRQERRDR 659
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 30.4 bits (67), Expect = 0.75
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 67 GGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLR 118
GGG GPGGP PGP E M G G P + +G H R R
Sbjct: 611 GGGRRGGPGGP-----PGPLMEQMGGRRGGRGGPGKMD---KGEHRQERRDR 654
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 30.4 bits (67), Expect = 0.75
Identities = 33/109 (30%), Positives = 38/109 (34%), Gaps = 13/109 (11%)
Query: 59 LSEAGVQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLR 118
L E V++G GP G + G PGP E G PP G P L
Sbjct: 25 LQEETVRKGPAGDRGPRG--ERGPPGPPGRDGEDGPTGPPGPPGPPG--------PPGL- 73
Query: 119 LGASSHSCQLLGLKDGLGPGEADLWPGRGSRRGIGQLGQLGLDLPLQVP 167
+ + Q G GLGPG L RG G G G P P
Sbjct: 74 --GGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEP 120
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 30.4 bits (67), Expect = 0.75
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 73 GPGGPLDGGAPGPSQEPMESLAAGLG-FPPRWSGLLRGLHHNPRHLRLGASSHSC 126
GPG P +G P + E++A P W G L G+ H L L ASS +C
Sbjct: 143 GPGAPAEGARAAPREGGGEAVAERCARSQPSWEGELWGVRHLV-SLSLPASSGAC 196
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 30.4 bits (67), Expect = 0.75
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 63 GVQEGGGASLGPGGPLDGGAPGPSQEP 89
G + GG G GGP G A GPSQ P
Sbjct: 36 GAGDRGGGGPGGGGPGGGSAGGPSQPP 62
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 30.4 bits (67), Expect = 0.75
Identities = 39/136 (28%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 26 AKSPSPKSKVRCLFAGLAS-AIRQLRLGDTKSMVLSEAGVQEGGGAS--------LGPGG 76
A SP P S V +GL+S + G S G GGGA+ P
Sbjct: 796 AASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGVPRPRAPPE 855
Query: 77 PLDGGAPGPSQEPMESLAAGLGFPPRW------SGLLRGLHHNPRHLRLGASSHSCQLLG 130
P D GAP P +P G P + LL L + LG + + G
Sbjct: 856 PPDPGAPRPPPDPGPLPLPGPREKPTFVVQVSTEQLLMSLREDVTRNLLGEKGATARETG 915
Query: 131 -LKDGLGPGEADLWPG 145
K G GPG + PG
Sbjct: 916 PRKAGRGPGNREKVPG 931
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 30.4 bits (67), Expect = 0.75
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 75 GGPLDGGAP---GPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLRLGASSHSCQLLG- 130
G P+ P GP QEP E +A+GL P W L +G+S +S G
Sbjct: 68 GSPVTETQPLSLGPGQEPGEEVASGLRTDPLW------------ELLVGSSGNSLTEWGS 115
Query: 131 LKDGLGPGEADLWPGRGSRR 150
+ G P + L P SRR
Sbjct: 116 TEGGSKPRASSLLPESTSRR 135
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 30.4 bits (67), Expect = 0.75
Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 67 GGGASLGP---GGPLDGGAPGPSQEPMESLAAGLGFPPRWSGLLRGLHHNPRHLR-LGAS 122
GGGA GP GGP GG PG G G GLL G H H+ LG
Sbjct: 140 GGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHL 199
Query: 123 SH 124
SH
Sbjct: 200 SH 201
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 30.4 bits (67), Expect = 0.75
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 23/114 (20%)
Query: 52 GDTKSMVLSEAGVQEGGGASLGPGGPL-----------------------DGGAPGPSQE 88
G+ SM S G+ + GG +GP P G PG +Q
Sbjct: 853 GNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQS 912
Query: 89 PMESLAAGLGFPPRWSGLLRGLHHNPRHLRLGASSHSCQLLGLKDGLGPGEADL 142
+ + ++ P S L P + + S +GL D + PGE+ L
Sbjct: 913 GLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKL 966
Score = 28.1 bits (61), Expect = 3.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 65 QEGGGASLGPGGPLDGGAPGPSQEPMESLAAG 96
Q+GGG +GPGG GGA S+ S A G
Sbjct: 315 QQGGGMMMGPGG---GGAASLSKAAAGSAAGG 343
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 30.4 bits (67), Expect = 0.75
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 23/114 (20%)
Query: 52 GDTKSMVLSEAGVQEGGGASLGPGGPL-----------------------DGGAPGPSQE 88
G+ SM S G+ + GG +GP P G PG +Q
Sbjct: 840 GNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQS 899
Query: 89 PMESLAAGLGFPPRWSGLLRGLHHNPRHLRLGASSHSCQLLGLKDGLGPGEADL 142
+ + ++ P S L P + + S +GL D + PGE+ L
Sbjct: 900 GLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKL 953
Score = 28.1 bits (61), Expect = 3.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 65 QEGGGASLGPGGPLDGGAPGPSQEPMESLAAG 96
Q+GGG +GPGG GGA S+ S A G
Sbjct: 315 QQGGGMMMGPGG---GGAASLSKAAAGSAAGG 343
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 30.4 bits (67), Expect = 0.75
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 23/114 (20%)
Query: 52 GDTKSMVLSEAGVQEGGGASLGPGGPL-----------------------DGGAPGPSQE 88
G+ SM S G+ + GG +GP P G PG +Q
Sbjct: 840 GNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQS 899
Query: 89 PMESLAAGLGFPPRWSGLLRGLHHNPRHLRLGASSHSCQLLGLKDGLGPGEADL 142
+ + ++ P S L P + + S +GL D + PGE+ L
Sbjct: 900 GLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKL 953
Score = 28.1 bits (61), Expect = 3.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 65 QEGGGASLGPGGPLDGGAPGPSQEPMESLAAG 96
Q+GGG +GPGG GGA S+ S A G
Sbjct: 315 QQGGGMMMGPGG---GGAASLSKAAAGSAAGG 343
>gi|239757944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 600
Score = 30.0 bits (66), Expect = 0.97
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 92 SLAAGLGFPPRWSGLLRGLHHNPR-HLRLGASSHSCQLLGLKDGLG 136
SL LG P+ L L H P H LGA++H QL+G+ LG
Sbjct: 349 SLVQHLGHIPKAPCLTHALPHLPAGHQLLGAAAHQQQLVGIVSELG 394
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 30.0 bits (66), Expect = 0.97
Identities = 18/45 (40%), Positives = 20/45 (44%)
Query: 61 EAGVQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSG 105
+ G GA+ PG P GAPGPS P A GL P G
Sbjct: 387 QEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDG 431
>gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]
Length = 439
Score = 30.0 bits (66), Expect = 0.97
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 75 GGPLDGGAPGPSQEP--MESLAAGLGFPPRWSGLLRGLHHNPRHLRLGASSHSCQLLGLK 132
G P AP P P + AAGL PP +S ++R H + + L L+
Sbjct: 303 GPPASAPAPAPRPPPCAFPAAAAGLACPPDYSLVVRAAERARAH---DQNLANLALQALR 359
Query: 133 DGLGPGEAD 141
DG G+ D
Sbjct: 360 DGAAAGDRD 368
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 30.0 bits (66), Expect = 0.97
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 28 SPSPKSKVRCLFAGLASAIRQLRLGDTKSMVLSEAGVQEGGGASLGPGG 76
SP+ + ++ L +R+LR+ LS G +GGGA G GG
Sbjct: 118 SPAEQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGG 166
>gi|194306623 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 30.0 bits (66), Expect = 0.97
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 73 GPGGPLDGGAPGPSQEPMESL---AAGLGFPPRWSGLLRGLH-HNPRHLRLGASSHSCQL 128
GPGG GGAP P + P+ L AG G +WS + G++ + R LR G + C
Sbjct: 512 GPGGA--GGAPRPGRRPLRLLYLCPAGGGAAVQWSRVEEGVNAYWFRGLRPGTNYSVCLA 569
Query: 129 L 129
L
Sbjct: 570 L 570
>gi|194306621 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 30.0 bits (66), Expect = 0.97
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 73 GPGGPLDGGAPGPSQEPMESL---AAGLGFPPRWSGLLRGLH-HNPRHLRLGASSHSCQL 128
GPGG GGAP P + P+ L AG G +WS + G++ + R LR G + C
Sbjct: 512 GPGGA--GGAPRPGRRPLRLLYLCPAGGGAAVQWSRVEEGVNAYWFRGLRPGTNYSVCLA 569
Query: 129 L 129
L
Sbjct: 570 L 570
>gi|39930401 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 30.0 bits (66), Expect = 0.97
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 73 GPGGPLDGGAPGPSQEPMESL---AAGLGFPPRWSGLLRGLH-HNPRHLRLGASSHSCQL 128
GPGG GGAP P + P+ L AG G +WS + G++ + R LR G + C
Sbjct: 512 GPGGA--GGAPRPGRRPLRLLYLCPAGGGAAVQWSRVEEGVNAYWFRGLRPGTNYSVCLA 569
Query: 129 L 129
L
Sbjct: 570 L 570
>gi|194306618 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 30.0 bits (66), Expect = 0.97
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 73 GPGGPLDGGAPGPSQEPMESL---AAGLGFPPRWSGLLRGLH-HNPRHLRLGASSHSCQL 128
GPGG GGAP P + P+ L AG G +WS + G++ + R LR G + C
Sbjct: 512 GPGGA--GGAPRPGRRPLRLLYLCPAGGGAAVQWSRVEEGVNAYWFRGLRPGTNYSVCLA 569
Query: 129 L 129
L
Sbjct: 570 L 570
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 30.0 bits (66), Expect = 0.97
Identities = 18/45 (40%), Positives = 20/45 (44%)
Query: 61 EAGVQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPRWSG 105
+ G GA+ PG P GAPGPS P A GL P G
Sbjct: 905 QEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDG 949
>gi|25777748 piggyBac transposable element derived 5 [Homo sapiens]
Length = 554
Score = 30.0 bits (66), Expect = 0.97
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 64 VQEGGGASLGPGGPLDGGAPGPSQEPMESLAAGLGFPPR-WSGL--LRGLHHNPRHLR-- 118
VQ G S GP L PG +P +S A PP WS L +RG L+
Sbjct: 11 VQSTLGDSAGPELQLLSIVPGRDLQPSDSFTASSSPPPSVWSELEHIRGKSEATTELKRP 70
Query: 119 -LGASSHSCQLLGLKDGLG 136
L S HSC L G+ G+G
Sbjct: 71 SLPGSIHSC-LCGVWCGVG 88
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,492,820
Number of Sequences: 37866
Number of extensions: 482266
Number of successful extensions: 2903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 2703
Number of HSP's gapped (non-prelim): 304
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.