Guide to the Human Genome
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Name: LOC100292722 Sequence: fasta or formatted (168aa) NCBI GI: 239755583
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         12           2
 C cysteine            2.4          4           1
 D aspartate           4.2          7           1
 E glutamate           4.2          7           1
 F phenylalanine       1.2          2           1
 G glycine            16.1         27           3
 H histidine           3.0          5           2
 I isoleucine          1.2          2           1
 K lysine              3.6          6           1
 L leucine            18.5         31           3
 M methionine          1.8          3           1
 N asparagine          0.6          1           1
 P proline            10.1         17           2
 Q glutamine           4.2          7           1
 R arginine            6.5         11           2
 S serine              8.3         14           2
 T threonine           1.8          3           2
 V valine              4.2          7           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
AKAP9                 0.031   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.031   A-kinase anchor protein 9 isoform 3 
ZNF207                0.022   zinc finger protein 207 isoform c 
ZNF207                0.022   zinc finger protein 207 isoform b 
VWA5B2                0.019   von Willebrand factor A domain containing 5B2 [Homo...
LOC100294450          0.019   PREDICTED: hypothetical protein 
EWSR1                 0.016   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.016   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.016   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.016   Ewing sarcoma breakpoint region 1 isoform 2 
COL1A2                0.016   alpha 2 type I collagen 
LOC730183             0.016   PREDICTED: hypothetical protein 
KHSRP                 0.016   KH-type splicing regulatory protein 
LMTK3                 0.016   lemur tyrosine kinase 3 
LOC401399             0.016   hypothetical protein LOC401399 
POU4F1                0.016   POU domain, class 4, transcription factor 1 
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100292149          0.016   PREDICTED: hypothetical protein 
LOC100293055          0.016   PREDICTED: similar to COL22A1 protein 
GJC2                  0.016   gap junction protein, gamma 2, 47kDa 
FBXO33                0.016   F-box protein 33 
ISLR2                 0.016   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.016   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.016   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.016   immunoglobulin superfamily containing leucine-rich ...
COL22A1               0.016   collagen, type XXII, alpha 1 
PGBD5                 0.016   piggyBac transposable element derived 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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