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Search of human proteins with 239755577
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C.
elegans) [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 647 0.0
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 449 e-126
gi|45580709 unc-93 homolog B1 [Homo sapiens] 418 e-117
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 393 e-109
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ... 384 e-107
gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens] 47 2e-05
gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens] 47 2e-05
gi|195947401 doublesex and mab-3 related transcription factor 2 ... 40 0.002
gi|5729806 doublesex and mab-3 related transcription factor 2 is... 40 0.002
gi|153945850 doublesex and mab-3 related transcription factor 2 ... 40 0.002
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 39 0.006
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 37 0.023
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 37 0.029
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 37 0.029
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 37 0.029
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 37 0.029
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 37 0.029
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 36 0.050
gi|185136021 spinster homolog 2 [Homo sapiens] 35 0.066
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 35 0.066
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 35 0.086
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 35 0.086
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 35 0.086
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 35 0.086
gi|4758392 forkhead box D1 [Homo sapiens] 35 0.086
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 34 0.15
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 34 0.15
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 34 0.15
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 34 0.19
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 33 0.25
>gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 312
Score = 647 bits (1670), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA
Sbjct: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
Query: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM
Sbjct: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
Query: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA 180
LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA
Sbjct: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA 180
Query: 181 EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHLSCDAHEKQAGGGADPLQGLKVP 240
EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHLSCDAHEKQAGGGADPLQGLKVP
Sbjct: 181 EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHLSCDAHEKQAGGGADPLQGLKVP 240
Query: 241 FLHPLLLWPEERDTPAMKSSERLGEDNLFTPDFGETLVRTSRLHACLSIALWILPALNWP 300
FLHPLLLWPEERDTPAMKSSERLGEDNLFTPDFGETLVRTSRLHACLSIALWILPALNWP
Sbjct: 241 FLHPLLLWPEERDTPAMKSSERLGEDNLFTPDFGETLVRTSRLHACLSIALWILPALNWP 300
Query: 301 HLSSLPSCEFGS 312
HLSSLPSCEFGS
Sbjct: 301 HLSSLPSCEFGS 312
>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 529
Score = 449 bits (1154), Expect = e-126
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA
Sbjct: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
Query: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM
Sbjct: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
Query: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA 180
LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA
Sbjct: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGA 180
Query: 181 EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEH 217
EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEH
Sbjct: 181 EEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEH 217
Score = 106 bits (265), Expect = 2e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 218 LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED 266
LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED
Sbjct: 448 LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED 496
>gi|45580709 unc-93 homolog B1 [Homo sapiens]
Length = 597
Score = 418 bits (1074), Expect = e-117
Identities = 206/217 (94%), Positives = 210/217 (96%), Gaps = 1/217 (0%)
Query: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
+AYSLG SAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWIL VAA
Sbjct: 380 VAYSLGASAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAA 439
Query: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
ALWGVGSALN TGLSTLLGILY+DKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+
Sbjct: 440 ALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAV 499
Query: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDG 179
LLVTLVAAAVSYLRMEQKLRRGVAP QPRIPRPQHKVRGYRYL EDNS+ESDAE EHGDG
Sbjct: 500 LLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDG 559
Query: 180 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEE 216
AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQ GDGPEE
Sbjct: 560 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEE 596
>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 503
Score = 393 bits (1009), Expect = e-109
Identities = 188/191 (98%), Positives = 190/191 (99%)
Query: 27 VAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNNTGLSTLLGILYKDKE 86
+AGAGVHLLLTFILFFWAPVPRVLQH WILCVAAALWGVGSALNNTGLSTLLGILY+DKE
Sbjct: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
Query: 87 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 146
RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP
Sbjct: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
Query: 147 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 206
QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE
Sbjct: 121 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 180
Query: 207 QAQRGDGPEEH 217
QAQRGDGPEEH
Sbjct: 181 QAQRGDGPEEH 191
Score = 106 bits (265), Expect = 2e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 218 LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED 266
LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED
Sbjct: 422 LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED 470
>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
sapiens]
Length = 319
Score = 384 bits (985), Expect = e-107
Identities = 193/214 (90%), Positives = 198/214 (92%), Gaps = 3/214 (1%)
Query: 3 YSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAAL 62
YSLG SA SLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWIL VAAAL
Sbjct: 22 YSLGASATSLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAAAL 81
Query: 63 WGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLL 122
W VGS+LN TGLSTLLGILY+DKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+LL
Sbjct: 82 WVVGSSLNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLALLL 141
Query: 123 VTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDG-- 179
VTLVAA VSYLRMEQKLRRGVAP QPRIPRPQHKVRGYRYL EDNS+ESDAE + GDG
Sbjct: 142 VTLVAATVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEEDNSDESDAEGDLGDGEE 201
Query: 180 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG 213
AE EAPPAGPRPGPEPAGLGRRPCPYEQAQ G
Sbjct: 202 AEAEAPPAGPRPGPEPAGLGRRPCPYEQAQGAMG 235
>gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens]
Length = 457
Score = 47.0 bits (110), Expect = 2e-05
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 12 LLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNN 71
L G + + R V V GA H+ L W P H + V + LWGV A+
Sbjct: 309 LYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQ 365
Query: 72 TGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAA 129
T + L G+L+ ++ ++ F Y W+A+ F + G S+ + KL +LL L
Sbjct: 366 TQNNALYGVLF--EKSKEAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTM 422
Query: 130 VSY 132
V+Y
Sbjct: 423 VAY 425
>gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens]
Length = 415
Score = 47.0 bits (110), Expect = 2e-05
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 12 LLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNN 71
L G + + R V V GA H+ L W P H + V + LWGV A+
Sbjct: 267 LYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQ 323
Query: 72 TGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAA 129
T + L G+L+ ++ ++ F Y W+A+ F + G S+ + KL +LL L
Sbjct: 324 TQNNALYGVLF--EKSKEAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTM 380
Query: 130 VSY 132
V+Y
Sbjct: 381 VAY 383
>gi|195947401 doublesex and mab-3 related transcription factor 2
isoform 1 [Homo sapiens]
Length = 226
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 164 EDNSEESDAEDEHGDGAEEEAPPAGP-----RPGPEPAGLGRRPCPYEQAQRGDGPEEHL 218
+D+ + DAE+E GDG E A P P R GP+P R P + + G GP E
Sbjct: 51 DDDGVDEDAEEE-GDGEEAGASPGMPGQPEQRGGPQP----RPPLAPQASPAGTGPRERC 105
Query: 219 SCDAHEKQAGGGADPLQGLKVP 240
+ AGGGA+P + + P
Sbjct: 106 T------PAGGGAEPRKLSRTP 121
>gi|5729806 doublesex and mab-3 related transcription factor 2
isoform 1 [Homo sapiens]
Length = 226
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 164 EDNSEESDAEDEHGDGAEEEAPPAGP-----RPGPEPAGLGRRPCPYEQAQRGDGPEEHL 218
+D+ + DAE+E GDG E A P P R GP+P R P + + G GP E
Sbjct: 51 DDDGVDEDAEEE-GDGEEAGASPGMPGQPEQRGGPQP----RPPLAPQASPAGTGPRERC 105
Query: 219 SCDAHEKQAGGGADPLQGLKVP 240
+ AGGGA+P + + P
Sbjct: 106 T------PAGGGAEPRKLSRTP 121
>gi|153945850 doublesex and mab-3 related transcription factor 2
isoform 2 [Homo sapiens]
Length = 561
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 164 EDNSEESDAEDEHGDGAEEEAPPAGP-----RPGPEPAGLGRRPCPYEQAQRGDGPEEHL 218
+D+ + DAE+E GDG E A P P R GP+P R P + + G GP E
Sbjct: 51 DDDGVDEDAEEE-GDGEEAGASPGMPGQPEQRGGPQP----RPPLAPQASPAGTGPRERC 105
Query: 219 SCDAHEKQAGGGADPLQGLKVP 240
+ AGGGA+P + + P
Sbjct: 106 T------PAGGGAEPRKLSRTP 121
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 38.9 bits (89), Expect = 0.006
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 21/119 (17%)
Query: 150 IPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLG---RRPCPYE 206
+P PQH G R L + + D + A PAGPR P+ A R PCP
Sbjct: 619 LPEPQHAKPGPRKLAERGPQ--------DSGDRAASPAGPRKSPQEAAAAPGTREPCPAA 670
Query: 207 Q-----AQRGDGPEEHLSCDAHEKQAGGGADPLQGLK-----VPFLHPLLLWPEERDTP 255
Q R P + S K G + ++G+K V L + P+E P
Sbjct: 671 QEPAPSEDRNPFPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRLERSLTVLPKEEKCP 729
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 37.0 bits (84), Expect = 0.023
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 164 EDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGP--EEHLSCD 221
E E SD G + PP+ PGPEP+ L P P+++ R GP E CD
Sbjct: 782 ERPDERSDDMCSQGSEIPLDPPPSEVIPGPEPSSL---PIPHQELLRERGPPNSEDSDCD 838
Query: 222 AHEKQAGGGADPLQ 235
+ E D L+
Sbjct: 839 STELDNSNSVDALR 852
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 36.6 bits (83), Expect = 0.029
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 150 IPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEE--EAPPAGPRPGPEPAGLGRRPCPYEQ 207
+P+ + K++ E + DA E E PPAG PGPE G G P P E
Sbjct: 511 VPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVENQPPAGSNPGPESEGSGVPPRPEEA 570
Query: 208 AQRGDGPEEHL 218
+ D E+ +
Sbjct: 571 DETWDSKEDKI 581
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 36.6 bits (83), Expect = 0.029
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 150 IPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEE--EAPPAGPRPGPEPAGLGRRPCPYEQ 207
+P+ + K++ E + DA E E PPAG PGPE G G P P E
Sbjct: 424 VPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVENQPPAGSNPGPESEGSGVPPRPEEA 483
Query: 208 AQRGDGPEEHL 218
+ D E+ +
Sbjct: 484 DETWDSKEDKI 494
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 36.6 bits (83), Expect = 0.029
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 150 IPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEE--EAPPAGPRPGPEPAGLGRRPCPYEQ 207
+P+ + K++ E + DA E E PPAG PGPE G G P P E
Sbjct: 347 VPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVENQPPAGSNPGPESEGSGVPPRPEEA 406
Query: 208 AQRGDGPEEHL 218
+ D E+ +
Sbjct: 407 DETWDSKEDKI 417
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 36.6 bits (83), Expect = 0.029
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 150 IPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEE--EAPPAGPRPGPEPAGLGRRPCPYEQ 207
+P+ + K++ E + DA E E PPAG PGPE G G P P E
Sbjct: 511 VPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVENQPPAGSNPGPESEGSGVPPRPEEA 570
Query: 208 AQRGDGPEEHL 218
+ D E+ +
Sbjct: 571 DETWDSKEDKI 581
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 36.6 bits (83), Expect = 0.029
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 150 IPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEE--EAPPAGPRPGPEPAGLGRRPCPYEQ 207
+P+ + K++ E + DA E E PPAG PGPE G G P P E
Sbjct: 315 VPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVENQPPAGSNPGPESEGSGVPPRPEEA 374
Query: 208 AQRGDGPEEHL 218
+ D E+ +
Sbjct: 375 DETWDSKEDKI 385
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 35.8 bits (81), Expect = 0.050
Identities = 30/114 (26%), Positives = 40/114 (35%), Gaps = 1/114 (0%)
Query: 106 VYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLED 165
V L + HM + LL + R + + PPQP P+ + E
Sbjct: 164 VRLVMAQHMIRDIQTLLSRMETLPYLQCRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEP 223
Query: 166 -NSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHL 218
SE E + EE AP P P PA G P P A P E++
Sbjct: 224 VESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPAPETNAPNHPSPAEYV 277
>gi|185136021 spinster homolog 2 [Homo sapiens]
Length = 549
Score = 35.4 bits (80), Expect = 0.066
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 9 AASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSA 68
AA + G LG R V L G +TF F +P+ Q+ W+L ++ L G+G A
Sbjct: 154 AAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSF---IPQ--QYFWLLVLSRGLVGIGEA 208
Query: 69 LNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSL 112
+T T++G L+ R + Y F + LGS L
Sbjct: 209 SYSTIAPTIIGDLFTKNTRTLMLSVFY--------FAIPLGSGL 244
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 35.4 bits (80), Expect = 0.066
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 164 EDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHLSCDAH 223
E EE + E+E G+G EEE G G E G E+ + G+G E +
Sbjct: 834 EGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEG-------EEEGEEGEGEGEEEEGEGE 886
Query: 224 EKQAGGG 230
++ G G
Sbjct: 887 GEEEGEG 893
Score = 33.9 bits (76), Expect = 0.19
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 164 EDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHLSCDAH 223
E+ EE + E+E G+G EEE G E G G+ E+ + G+G EE +
Sbjct: 827 EEEEEEGEGEEEEGEGEEEEG------EGEEEEGEGKGE---EEGEEGEGEEEGEEGEGE 877
Query: 224 -EKQAGGGADPLQG 236
E++ G G +G
Sbjct: 878 GEEEEGEGEGEEEG 891
Score = 30.8 bits (68), Expect = 1.6
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 165 DNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHLSCDAHE 224
+ EE + E+ G+ +EE G R E AG + E+ +G+G EE E
Sbjct: 754 EGKEEGEGEEVEGEREKEE----GERKKEERAGKEEKG--EEEGDQGEGEEEETEGRGEE 807
Query: 225 KQAGG 229
K+ GG
Sbjct: 808 KEEGG 812
Score = 30.8 bits (68), Expect = 1.6
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 164 EDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQ--RGDGPEEHLSCD 221
E+ E E+ G+G EEE G G E G G + + G+G EE +
Sbjct: 897 EEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWE 956
Query: 222 AHEKQAGG 229
E++ G
Sbjct: 957 GEEEEGEG 964
Score = 30.0 bits (66), Expect = 2.8
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 164 EDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHLSCDAH 223
E+ E + ED G+G EEE G G E G G E + G+G E +
Sbjct: 933 EEEEGEGEGEDGEGEGEEEE----GEWEGEEEEGEG------EGEEEGEGEGEEGEGEGE 982
Query: 224 EKQAGGGADPLQG 236
E++ G + +G
Sbjct: 983 EEEGEGEGEEEEG 995
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 35.0 bits (79), Expect = 0.086
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 145 PPQPRIPRPQHKVRGYRYLED-NSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPC 203
PPQP P+ + E SE E + EE AP P P PA G P
Sbjct: 197 PPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPA 256
Query: 204 PYEQAQRGDGPEEHL 218
P A P E++
Sbjct: 257 PETNAPNHPSPAEYV 271
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 35.0 bits (79), Expect = 0.086
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 145 PPQPRIPRPQHKVRGYRYLED-NSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPC 203
PPQP P+ + E SE E + EE AP P P PA G P
Sbjct: 197 PPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPA 256
Query: 204 PYEQAQRGDGPEEHL 218
P A P E++
Sbjct: 257 PETNAPNHPSPAEYV 271
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 35.0 bits (79), Expect = 0.086
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 145 PPQPRIPRPQHKVRGYRYLED-NSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPC 203
PPQP P+ + E SE E + EE AP P P PA G P
Sbjct: 197 PPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPA 256
Query: 204 PYEQAQRGDGPEEHL 218
P A P E++
Sbjct: 257 PETNAPNHPSPAEYV 271
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 35.0 bits (79), Expect = 0.086
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 168 EESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHLS---CDAHE 224
E S+A G G++E+ P G A PCP E + P HLS A E
Sbjct: 1409 ELSEASSPDGKGSQEDDPVQEEEAGR--ASASAEPCPAEGTEEPTEPPSHLSETDPSASE 1466
Query: 225 KQAGGGADPLQGLKVP 240
+Q+G +P GL+ P
Sbjct: 1467 RQSGSQLEP--GLEKP 1480
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 35.0 bits (79), Expect = 0.086
Identities = 30/97 (30%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 148 PRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQ 207
PR+ P + R R E D E+E D APPAG P P P P
Sbjct: 44 PRLAVPAQRRRRRRSYAGEDELEDLEEEEDDDDILLAPPAGGSPAPP------GPAPAAG 97
Query: 208 AQRGDGPEEHLSCDAHEKQAGGGADPLQGLKVPFLHP 244
A G G AGGG G K P + P
Sbjct: 98 AGAGGG--------GGGGGAGGGGSAGSGAKNPLVKP 126
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 34.3 bits (77), Expect = 0.15
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 142 GVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPG-PEPAGLGR 200
G+AP I P+ G++ E EE + E E G+EEE P+ +PG P G GR
Sbjct: 86 GLAPAPTTIRDPE---AGHQ--ERPEEEGEDEAEASSGSEEEPAPSSLQPGSPASPGPGR 140
Query: 201 RPC 203
R C
Sbjct: 141 RLC 143
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 34.3 bits (77), Expect = 0.15
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 142 GVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPG-PEPAGLGR 200
G+AP I P+ G++ E EE + E E G+EEE P+ +PG P G GR
Sbjct: 86 GLAPAPTTIRDPE---AGHQ--ERPEEEGEDEAEASSGSEEEPAPSSLQPGSPASPGPGR 140
Query: 201 RPC 203
R C
Sbjct: 141 RLC 143
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 34.3 bits (77), Expect = 0.15
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 142 GVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPG-PEPAGLGR 200
G+AP I P+ G++ E EE + E E G+EEE P+ +PG P G GR
Sbjct: 86 GLAPAPTTIRDPE---AGHQ--ERPEEEGEDEAEASSGSEEEPAPSSLQPGSPASPGPGR 140
Query: 201 RPC 203
R C
Sbjct: 141 RLC 143
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 33.9 bits (76), Expect = 0.19
Identities = 31/106 (29%), Positives = 36/106 (33%), Gaps = 14/106 (13%)
Query: 133 LRMEQKLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPG 192
LRM+ L+ P P P P E E+DA + P P
Sbjct: 2 LRMKLPLK----PTHPAEPPP----------EAEEPEADARPGAKAPSRRRRDCRPPPPP 47
Query: 193 PEPAGLGRRPCPYEQAQRGDGPEEHLSCDAHEKQAGGGADPLQGLK 238
P PAG R P P RG GP A GGG P L+
Sbjct: 48 PPPAGPSRGPLPPPPPPRGLGPPVAGGAAAGAGMPGGGGGPSAALR 93
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 33.5 bits (75), Expect = 0.25
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 182 EEAPPA------GPRPGP---EPAGLGRRPCPYEQAQRGDGPEEHLSCDAHEKQAGGG 230
+E+PPA GPRPGP +PA P P+ A RG P H +H ++ GGG
Sbjct: 214 KESPPALRTVGDGPRPGPKRPDPAPSRLPPPPHAGALRGP-PLPHRLRRSHFREVGGG 270
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,821,804
Number of Sequences: 37866
Number of extensions: 866578
Number of successful extensions: 6399
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 5894
Number of HSP's gapped (non-prelim): 647
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.