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Search of human proteins with 239755517
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755517 PREDICTED: hypothetical protein [Homo sapiens]
(369 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755517 PREDICTED: hypothetical protein [Homo sapiens] 756 0.0
gi|169203411 PREDICTED: hypothetical protein [Homo sapiens] 405 e-113
gi|169202586 PREDICTED: hypothetical protein [Homo sapiens] 405 e-113
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 37 0.037
gi|148612825 Rap GTPase interactor [Homo sapiens] 36 0.063
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 33 0.31
gi|26190608 synaptojanin 2 [Homo sapiens] 33 0.31
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 33 0.53
gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 32 1.2
gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 32 1.2
gi|16306552 semaphorin Y [Homo sapiens] 32 1.2
gi|239754364 PREDICTED: hypothetical protein [Homo sapiens] 31 2.0
gi|239748911 PREDICTED: hypothetical protein XP_002346854 [Homo ... 31 2.0
gi|239742935 PREDICTED: hypothetical protein XP_002342692 [Homo ... 31 2.0
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 31 2.0
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 30 2.6
gi|157909822 pragmin [Homo sapiens] 30 2.6
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens] 30 2.6
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens] 30 3.5
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens] 30 3.5
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens] 30 3.5
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 30 4.5
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 30 4.5
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 30 4.5
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 30 4.5
gi|6912586 6-phosphogluconolactonase [Homo sapiens] 30 4.5
gi|39995093 parathyroid hormone-like hormone isoform 1 prepropro... 29 5.9
gi|39995091 parathyroid hormone-like hormone isoform 1 prepropro... 29 5.9
gi|39995089 parathyroid hormone-like hormone isoform 2 prepropro... 29 5.9
gi|4506269 parathyroid hormone-like hormone isoform 2 preproprot... 29 5.9
>gi|239755517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 369
Score = 756 bits (1951), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL 60
MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL
Sbjct: 1 MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL 60
Query: 61 DHLRGILGAKIVLLPDEDTFRKRGILFLDFLPEGLPLVDIMGAGLFFLLQIQGEFPLRVE 120
DHLRGILGAKIVLLPDEDTFRKRGILFLDFLPEGLPLVDIMGAGLFFLLQIQGEFPLRVE
Sbjct: 61 DHLRGILGAKIVLLPDEDTFRKRGILFLDFLPEGLPLVDIMGAGLFFLLQIQGEFPLRVE 120
Query: 121 SRGESRSSKPDTPLWALPTARTDAFEGGGFVNQLPFPPHRGAPKWLLAICKGTATLVRAG 180
SRGESRSSKPDTPLWALPTARTDAFEGGGFVNQLPFPPHRGAPKWLLAICKGTATLVRAG
Sbjct: 121 SRGESRSSKPDTPLWALPTARTDAFEGGGFVNQLPFPPHRGAPKWLLAICKGTATLVRAG 180
Query: 181 PRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKDVQRDSRDF 240
PRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKDVQRDSRDF
Sbjct: 181 PRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKDVQRDSRDF 240
Query: 241 GGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRN 300
GGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRN
Sbjct: 241 GGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRN 300
Query: 301 YQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAPVA 360
YQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAPVA
Sbjct: 301 YQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAPVA 360
Query: 361 PRPRWSNLS 369
PRPRWSNLS
Sbjct: 361 PRPRWSNLS 369
>gi|169203411 PREDICTED: hypothetical protein [Homo sapiens]
Length = 289
Score = 405 bits (1041), Expect = e-113
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 173 TATLVRAGPRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKD 232
TATLVRAGPRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKD
Sbjct: 93 TATLVRAGPRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKD 152
Query: 233 VQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQ 292
VQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQ
Sbjct: 153 VQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQ 212
Query: 293 GLSSESRNYQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCG 352
GLSSESRNYQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCG
Sbjct: 213 GLSSESRNYQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCG 272
Query: 353 RDRRAPVAPRPRWSNLS 369
RDRRAPVAPRPRWSNLS
Sbjct: 273 RDRRAPVAPRPRWSNLS 289
Score = 142 bits (358), Expect = 5e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL 60
MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL
Sbjct: 1 MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL 60
Query: 61 DHLRGILG 68
DHLRGILG
Sbjct: 61 DHLRGILG 68
>gi|169202586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 289
Score = 405 bits (1041), Expect = e-113
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 173 TATLVRAGPRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKD 232
TATLVRAGPRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKD
Sbjct: 93 TATLVRAGPRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAGEGYGDERVKD 152
Query: 233 VQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQ 292
VQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQ
Sbjct: 153 VQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQ 212
Query: 293 GLSSESRNYQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCG 352
GLSSESRNYQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCG
Sbjct: 213 GLSSESRNYQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCG 272
Query: 353 RDRRAPVAPRPRWSNLS 369
RDRRAPVAPRPRWSNLS
Sbjct: 273 RDRRAPVAPRPRWSNLS 289
Score = 142 bits (358), Expect = 5e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL 60
MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL
Sbjct: 1 MASYWAFSFETQGFSSWVLSHRFLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSL 60
Query: 61 DHLRGILG 68
DHLRGILG
Sbjct: 61 DHLRGILG 68
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 36.6 bits (83), Expect = 0.037
Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 254 PSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPTQYSNL 313
P R+P SPS P+ R +P S +S + R++ + Q R PP
Sbjct: 380 PQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRS---PVPPSCPAPQPRPPPPPPPGE 436
Query: 314 YTYLEEP-ALPPGKHPWGAGRGRR------ERAGRRGAASSWLQCGRDRRAPVAPRPR 364
T E A PP H +GRR E A GA+ WLQ A P+PR
Sbjct: 437 RTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQA----EAATLPKPR 490
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 35.8 bits (81), Expect = 0.063
Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 15/128 (11%)
Query: 251 LAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPTQY 310
L PS P APR P A VA LPL W +A G Q P T
Sbjct: 844 LEAPSCPLAPRDPGPAAREVAPERTLPL---RGAPWAQA-PPGRQPSRGGSQAGPPHTDS 899
Query: 311 SNLYTYLEEPALP-PGKHPWGAGRG----------RRERAGRRGAASSWLQCGRDRRAPV 359
S L T P P PG W G R +G RGAA +P
Sbjct: 900 SCLLTPPSTPLGPEPGDPDWPESGGPCGKALPERQRNGLSGLRGAAPEGDSAALAEESPP 959
Query: 360 APRPRWSN 367
AP R S+
Sbjct: 960 APSSRSSS 967
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 33.5 bits (75), Expect = 0.31
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 286 WRKAGTQGLSSESRNYQDRDPPTQYSNLYT--YLEEPALPPGKHPWGAGRGRRERAGR-R 342
WRK GT G+ ++ ++ DP T + + +E LPP + AG+ E G R
Sbjct: 1856 WRKEGTPGIFQKTAIWEAPDPDTTPAVCKSAGVVENQILPPETNSEDAGKEGSEVQGEPR 1915
Query: 343 GAASSWLQCGRDRRA 357
S W CG +RA
Sbjct: 1916 SPESEWF-CGTRKRA 1929
>gi|26190608 synaptojanin 2 [Homo sapiens]
Length = 1496
Score = 33.5 bits (75), Expect = 0.31
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 200 EFSSVRQGAGLAPAAVSPALDAGEGY----GDERVKDVQRDSRDFGGHLN-SVACCLAVP 254
+ S V LAP + SPAL + + D + +++R+ G + S + L+VP
Sbjct: 1040 DLSDVPGPTALAPPSKSPALTKKKQHPTYKDDADLVELKRELEAVGEFRHRSPSRSLSVP 1099
Query: 255 SLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQG 293
+ PR P+ P RP ++ SD S +S GT G
Sbjct: 1100 NRPRPPQPPQRPPPPTGLMVKKSASDASISS----GTHG 1134
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 32.7 bits (73), Expect = 0.53
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 25/142 (17%)
Query: 210 LAPAAVSPALDAGEGYGDERVKDVQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSR---- 265
+ P+ V P+ EG+ +R + V+ G L S+ P LP P+SP
Sbjct: 865 VVPSPVRPSGGRPEGFLGQRGRAVRPTRLSLEG-LPSLPSMHEYP-LPPEPKSPGEYINI 922
Query: 266 --------------PALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPTQYS 311
P LA A + LS S S +GT G SS+SR R P + Y
Sbjct: 923 DFGEPGARLSPPAPPLLASAASSSSLLSASSPASSLGSGTPGTSSDSR---QRSPLSDYM 979
Query: 312 NLYTYLEEPALP--PGKHPWGA 331
NL + P P HP G+
Sbjct: 980 NLDFSSPKSPKPGAPSGHPVGS 1001
>gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 31.6 bits (70), Expect = 1.2
Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 16/163 (9%)
Query: 205 RQGAGLAPAAVSPALDAGEGYGDERVKDVQRDSRDFGGHLNSVACCLAVPSLPRAPRSPS 264
R A L A+ AGEG G RVK R L +P++ RS
Sbjct: 83 RLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFV---LKDSPVRDLLPTVNSLTRSTP 139
Query: 265 RPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPTQYSNLYTYLEEPALPP 324
P+ RL S++ S R + S + + R+ PT NL+ + PA P
Sbjct: 140 SPSSLTPRL----RSNDRKGSVR--ALRATSGKRPSNMKRESPT--CNLFPASKSPASSP 191
Query: 325 GKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAPVAPRPRWSN 367
RGR +GR A+ R+ +AP+P SN
Sbjct: 192 LTRSTPPVRGRAGPSGRAAASPP-----TPIRSVLAPQPSTSN 229
>gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 31.6 bits (70), Expect = 1.2
Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 16/163 (9%)
Query: 205 RQGAGLAPAAVSPALDAGEGYGDERVKDVQRDSRDFGGHLNSVACCLAVPSLPRAPRSPS 264
R A L A+ AGEG G RVK R L +P++ RS
Sbjct: 83 RLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFV---LKDSPVRDLLPTVNSLTRSTP 139
Query: 265 RPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPTQYSNLYTYLEEPALPP 324
P+ RL S++ S R + S + + R+ PT NL+ + PA P
Sbjct: 140 SPSSLTPRL----RSNDRKGSVR--ALRATSGKRPSNMKRESPT--CNLFPASKSPASSP 191
Query: 325 GKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAPVAPRPRWSN 367
RGR +GR A+ R+ +AP+P SN
Sbjct: 192 LTRSTPPVRGRAGPSGRAAASPP-----TPIRSVLAPQPSTSN 229
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 31.6 bits (70), Expect = 1.2
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 116 PLRVESRGESR-SSKPDTPLWALPTARTDAFEGGGFVNQLPFPPHRGAPKWLLAICKGTA 174
PLR++ E R +S P P + P R GGG +LPF HR P L + G
Sbjct: 817 PLRLDVPPEGRCASAPARPALSAPAPRLGV--GGG--RRLPFSGHRAPPALLTRVPSGGP 872
Query: 175 TLVRAGP 181
+ GP
Sbjct: 873 SRYSGGP 879
>gi|239754364 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 320 PALPPGKHPW---------GAGRGRRERAGRRGAASSWLQCGRDRRAPVAPRPRWS 366
P LPP + W GA GR R R+G +S+ R AP AP R S
Sbjct: 103 PPLPPRQGQWPGTARVRAGGAVAGRSTRQSRQGGSSASSGAAPPREAPAAPAVRSS 158
>gi|239748911 PREDICTED: hypothetical protein XP_002346854 [Homo
sapiens]
Length = 189
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 320 PALPPGKHPW---------GAGRGRRERAGRRGAASSWLQCGRDRRAPVAPRPRWS 366
P LPP + W GA GR R R+G +S+ R AP AP R S
Sbjct: 103 PPLPPRQGQWPGTARVRAGGAVAGRSTRQSRQGGSSASSGAAPPREAPAAPAVRSS 158
>gi|239742935 PREDICTED: hypothetical protein XP_002342692 [Homo
sapiens]
Length = 189
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 320 PALPPGKHPW---------GAGRGRRERAGRRGAASSWLQCGRDRRAPVAPRPRWS 366
P LPP + W GA GR R R+G +S+ R AP AP R S
Sbjct: 103 PPLPPRQGQWPGTARVRAGGAVAGRSTRQSRQGGSSASSGAAPPREAPAAPAVRSS 158
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 323 PPGKHP-WGAGRGRRER--AGRRGAASSWLQCGRDRRAPVAPRPRWSNLS 369
PP K P RG R+R GR G+ Q G++ +AP AP R LS
Sbjct: 844 PPAKRPNTSPDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLS 893
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 30.4 bits (67), Expect = 2.6
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 249 CCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRD--- 305
CCL PSL + SPS P + + P + E+ G + + ++ +D
Sbjct: 87 CCLCSPSLEESTSSPSEPEDVIDLVQPAPGAGEAEGLPEGTQAAGPAPAGKEHRKQDAET 146
Query: 306 -PPTQYSNLYTYLEEPALPPGKHP 328
PP T L P LP P
Sbjct: 147 PPPPDPPAPETLLAPPPLPSTPDP 170
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 30.4 bits (67), Expect = 2.6
Identities = 48/197 (24%), Positives = 69/197 (35%), Gaps = 24/197 (12%)
Query: 165 WLLAICKGTATLVRAGPRLG--CCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAG 222
W C G A + GP CC + A + + + S+ A ++ S L G
Sbjct: 289 WEQGKCSGPAEQEKRGPSFPKECCSQGPTAHPSCLGPKKLSLTSEAAIS----SDGLSCG 344
Query: 223 EGYGDERVKDVQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSRPALAVARLLALPLSDES 282
G G S F HL S C L P + P P + +R L L +
Sbjct: 345 SGSGSGA-------SSPFVPHLESDYCSLMKEPAPEKQQDPGCPGVTPSRCLGLTGEPQP 397
Query: 283 STSWRKA-GTQGLSSESRNYQDRDPPTQYSNLYTYLEEPALPPGKHPWGAGRGRRERAGR 341
R+A + + +ES + P S +E A G+ G+ A
Sbjct: 398 PAHPREATQPEPIYAESTKRKKAAPVPSKSQ--AKIEHAAAAQGQ-----GQVCTGNAWA 450
Query: 342 RGAASSWLQCGRDRRAP 358
+ AAS W GRD P
Sbjct: 451 QKAASGW---GRDSPDP 464
>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
Length = 1044
Score = 30.4 bits (67), Expect = 2.6
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 20/148 (13%)
Query: 9 FETQGFSSWVLSHR--FLDGEVDKQLSFNHKVKAKLMQERFLGRLDQGVPNSSLDHLRGI 66
F++ G L HR FLD H K K E ++G +SLD L+
Sbjct: 36 FQSPGNLELPLLHRVAFLD----------HLCKQKSEVEEEGEEEEEGEDEASLDPLKPC 85
Query: 67 -------LGAKIVLLPDEDTFRKRGILFLDFLPEGLPLVDIMGAGLFFLLQIQGEFPLRV 119
G + P + + G+L +PE + + + F + QI FP+R
Sbjct: 86 SPTKEAPTGEQATPAPPQPSCGSEGLLKAIGIPEQTVMQPVSPSRSFPIFQILTSFPVRH 145
Query: 120 E-SRGESRSSKPDTPLWALPTARTDAFE 146
+ + G + + W LP+ +++ E
Sbjct: 146 KIASGNRQQQRKSQLFWGLPSLHSESLE 173
>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
Length = 1031
Score = 30.0 bits (66), Expect = 3.5
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 35 NHKVKAKLMQERFLGRLDQGVPNSSLDHLRGI-------LGAKIVLLPDEDTFRKRGILF 87
+H K K E ++G +SLD L+ G + P + + G+L
Sbjct: 41 DHLCKQKSEVEEEGEEEEEGEDEASLDPLKPCSPTKEAPTGEQATPAPPQPSCGSEGLLK 100
Query: 88 LDFLPEGLPLVDIMGAGLFFLLQIQGEFPLRVE-SRGESRSSKPDTPLWALPTARTDAFE 146
+PE + + + F + QI FP+R + + G + + W LP+ +++ E
Sbjct: 101 AIGIPEQTVMQPVSPSRSFPIFQILTSFPVRHKIASGNRQQQRKSQLFWGLPSLHSESLE 160
>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
Length = 1006
Score = 30.0 bits (66), Expect = 3.5
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 35 NHKVKAKLMQERFLGRLDQGVPNSSLDHLRGI-------LGAKIVLLPDEDTFRKRGILF 87
+H K K E ++G +SLD L+ G + P + + G+L
Sbjct: 16 DHLCKQKSEVEEEGEEEEEGEDEASLDPLKPCSPTKEAPTGEQATPAPPQPSCGSEGLLK 75
Query: 88 LDFLPEGLPLVDIMGAGLFFLLQIQGEFPLRVE-SRGESRSSKPDTPLWALPTARTDAFE 146
+PE + + + F + QI FP+R + + G + + W LP+ +++ E
Sbjct: 76 AIGIPEQTVMQPVSPSRSFPIFQILTSFPVRHKIASGNRQQQRKSQLFWGLPSLHSESLE 135
>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
Length = 1079
Score = 30.0 bits (66), Expect = 3.5
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 35 NHKVKAKLMQERFLGRLDQGVPNSSLDHLRGI-------LGAKIVLLPDEDTFRKRGILF 87
+H K K E ++G +SLD L+ G + P + + G+L
Sbjct: 89 DHLCKQKSEVEEEGEEEEEGEDEASLDPLKPCSPTKEAPTGEQATPAPPQPSCGSEGLLK 148
Query: 88 LDFLPEGLPLVDIMGAGLFFLLQIQGEFPLRVE-SRGESRSSKPDTPLWALPTARTDAFE 146
+PE + + + F + QI FP+R + + G + + W LP+ +++ E
Sbjct: 149 AIGIPEQTVMQPVSPSRSFPIFQILTSFPVRHKIASGNRQQQRKSQLFWGLPSLHSESLE 208
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 29.6 bits (65), Expect = 4.5
Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 249 CCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPT 308
CC A+P P L R + SD SS+S ++ + SS R
Sbjct: 5 CCSALPP----------PPLEKGRCSSY--SDSSSSSSERSSSSSSSSSESGSSSRSSSN 52
Query: 309 QYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAP 358
S + PA PP P + R A R A S G RR P
Sbjct: 53 NSS-----ISRPAAPPEPRPQQQPQPRSPAARRAAARSRAAAAGGMRRDP 97
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 29.6 bits (65), Expect = 4.5
Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 249 CCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPT 308
CC A+P P L R + SD SS+S ++ + SS R
Sbjct: 5 CCSALPP----------PPLEKGRCSSY--SDSSSSSSERSSSSSSSSSESGSSSRSSSN 52
Query: 309 QYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAP 358
S + PA PP P + R A R A S G RR P
Sbjct: 53 NSS-----ISRPAAPPEPRPQQQPQPRSPAARRAAARSRAAAAGGMRRDP 97
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 29.6 bits (65), Expect = 4.5
Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 249 CCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPT 308
CC A+P P L R + SD SS+S ++ + SS R
Sbjct: 5 CCSALPP----------PPLEKGRCSSY--SDSSSSSSERSSSSSSSSSESGSSSRSSSN 52
Query: 309 QYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAP 358
S + PA PP P + R A R A S G RR P
Sbjct: 53 NSS-----ISRPAAPPEPRPQQQPQPRSPAARRAAARSRAAAAGGMRRDP 97
>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
Length = 850
Score = 29.6 bits (65), Expect = 4.5
Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 249 CCLAVPSLPRAPRSPSRPALAVARLLALPLSDESSTSWRKAGTQGLSSESRNYQDRDPPT 308
CC A+P P L R + SD SS+S ++ + SS R
Sbjct: 5 CCSALPP----------PPLEKGRCSSY--SDSSSSSSERSSSSSSSSSESGSSSRSSSN 52
Query: 309 QYSNLYTYLEEPALPPGKHPWGAGRGRRERAGRRGAASSWLQCGRDRRAP 358
S + PA PP P + R A R A S G RR P
Sbjct: 53 NSS-----ISRPAAPPEPRPQQQPQPRSPAARRAAARSRAAAAGGMRRDP 97
>gi|6912586 6-phosphogluconolactonase [Homo sapiens]
Length = 258
Score = 29.6 bits (65), Expect = 4.5
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 172 GTATLVRAGPRLGCCPRKIGAENALVLSEFSSVRQGAGLAPAAVSPALDAG-----EGYG 226
G A R CC A AL LS S V A PAAV+PA A G+
Sbjct: 19 GAALAQLVAQRAACCLAGARARFALGLSGGSLVSMLARELPAAVAPAGPASLARWTLGFC 78
Query: 227 DERVKDVQRDSRDFGGHLNSVACCLAVPSLPRAPRSPSRP 266
DER+ +G + + L +P +P P
Sbjct: 79 DERLVPFDHAESTYGLYRTHLLSRLPIPESQVITINPELP 118
>gi|39995093 parathyroid hormone-like hormone isoform 1
preproprotein [Homo sapiens]
Length = 177
Score = 29.3 bits (64), Expect = 5.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 308 TQYSN-LYTYLEEPALPPGKHPWG-AGRGRRERAGRRGAASSWLQCG 352
TQ +N + TY E+P PGK G G+ + + +R S+WL G
Sbjct: 105 TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSG 151
>gi|39995091 parathyroid hormone-like hormone isoform 1
preproprotein [Homo sapiens]
Length = 177
Score = 29.3 bits (64), Expect = 5.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 308 TQYSN-LYTYLEEPALPPGKHPWG-AGRGRRERAGRRGAASSWLQCG 352
TQ +N + TY E+P PGK G G+ + + +R S+WL G
Sbjct: 105 TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSG 151
>gi|39995089 parathyroid hormone-like hormone isoform 2
preproprotein [Homo sapiens]
Length = 175
Score = 29.3 bits (64), Expect = 5.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 308 TQYSN-LYTYLEEPALPPGKHPWG-AGRGRRERAGRRGAASSWLQCG 352
TQ +N + TY E+P PGK G G+ + + +R S+WL G
Sbjct: 105 TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSG 151
>gi|4506269 parathyroid hormone-like hormone isoform 2 preproprotein
[Homo sapiens]
Length = 175
Score = 29.3 bits (64), Expect = 5.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 308 TQYSN-LYTYLEEPALPPGKHPWG-AGRGRRERAGRRGAASSWLQCG 352
TQ +N + TY E+P PGK G G+ + + +R S+WL G
Sbjct: 105 TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSG 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,595,710
Number of Sequences: 37866
Number of extensions: 866969
Number of successful extensions: 2787
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2777
Number of HSP's gapped (non-prelim): 38
length of query: 369
length of database: 18,247,518
effective HSP length: 104
effective length of query: 265
effective length of database: 14,309,454
effective search space: 3792005310
effective search space used: 3792005310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.