Guide to the Human Genome
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Name: LOC100292713 Sequence: fasta or formatted (522aa) NCBI GI: 239756135
Description:

PREDICTED: similar to AGAP002076-PA

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         56           2
 C cysteine            0.4          2           1
 D aspartate           6.7         35           2
 E glutamate           4.8         25           2
 F phenylalanine       3.1         16           1
 G glycine            13.4         70           3
 H histidine           5.7         30           2
 I isoleucine          3.4         18           1
 K lysine              1.0          5           1
 L leucine            16.1         84           2
 M methionine          0.2          1           1
 N asparagine          1.5          8           1
 P proline             3.6         19           2
 Q glutamine           4.6         24           2
 R arginine            7.5         39           3
 S serine              1.7          9           1
 T threonine           1.7          9           2
 V valine             12.3         64           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to AGAP002076-PA 
LOC100291037          1.000   PREDICTED: hypothetical protein XP_002347503 
LOC100287214          1.000   PREDICTED: hypothetical protein XP_002343322 
ATP5A1                0.009   ATP synthase, H+ transporting, mitochondrial F1 comp...
ATP5A1                0.009   ATP synthase, H+ transporting, mitochondrial F1 compl...
LOC100290946          0.009   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.009   PREDICTED: hypothetical protein XP_002344246 
LOC100293110          0.008   PREDICTED: hypothetical protein 
SLC12A7               0.008   solute carrier family 12 (potassium/chloride transp...
LOC100128598          0.007   PREDICTED: hypothetical protein 
LOC100128598          0.007   PREDICTED: hypothetical protein 
LOC100128598          0.007   PREDICTED: hypothetical protein 
LOC728767             0.006   PREDICTED: hypothetical protein 
LOC728767             0.006   PREDICTED: hypothetical protein 
LOC100292049          0.006   PREDICTED: hypothetical protein XP_002344884 
LOC100289438          0.006   PREDICTED: hypothetical protein XP_002343385 
E4F1                  0.006   p120E4F 
CEACAM1               0.005   carcinoembryonic antigen-related cell adhesion molec...
LOC100129169          0.005   PREDICTED: hypothetical protein 
LOC100129169          0.005   PREDICTED: hypothetical protein 
LOC100129169          0.005   PREDICTED: hypothetical protein 
C12orf69              0.004   hypothetical protein LOC440087 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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