Guide to the Human Genome
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Name: PDS5A Sequence: fasta or formatted (1337aa) NCBI GI: 155030216
Description:

PDS5, regulator of cohesion maintenance, homolog A isoform 1

Referenced in:

Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [1297aa] PDS5, regulator of cohesion maintenance, homolog A isoform 2
alt prot [600aa] PDS5, regulator of cohesion maintenance, homolog A isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        104           2
 C cysteine            2.0         27           2
 D aspartate           5.9         79           2
 E glutamate           7.0         94           3
 F phenylalanine       3.4         46           2
 G glycine             3.5         47           2
 H histidine           2.4         32           1
 I isoleucine          5.7         76           2
 K lysine              8.5        113           2
 L leucine            11.7        157           3
 M methionine          2.7         36           2
 N asparagine          5.1         68           2
 P proline             5.1         68           2
 Q glutamine           4.6         62           2
 R arginine            4.9         66           2
 S serine              6.7         89           2
 T threonine           4.4         59           2
 V valine              6.0         80           2
 W tryptophan          0.6          8           1
 Y tyrosine            1.9         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PDS5, regulator of cohesion maintenance, homolog A ... 
PDS5A                 0.969   PDS5, regulator of cohesion maintenance, homolog A ...
PDS5B                 0.689   PDS5, regulator of cohesion maintenance, homolog B [H...
PDS5A                 0.441   PDS5, regulator of cohesion maintenance, homolog A ...
TRIP12                0.006   thyroid hormone receptor interactor 12 
NSBP1                 0.006   nucleosomal binding protein 1 
NOLC1                 0.006   nucleolar and coiled-body phosphoprotein 1 
DAB2                  0.006   disabled homolog 2 
EIF5B                 0.005   eukaryotic translation initiation factor 5B 
ATF7IP2               0.005   activating transcription factor 7 interacting protei...
LOC100133923          0.005   PREDICTED: similar to UPF0634 protein C 
TCOF1                 0.005   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.005   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.005   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.005   Treacher Collins-Franceschetti syndrome 1 isoform c ...
CYLC2                 0.005   cylicin 2 
LRRFIP1               0.005   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.005   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.005   leucine rich repeat (in FLII) interacting protein 1...
TAOK2                 0.005   TAO kinase 2 isoform 2 
BOD1L                 0.005   biorientation of chromosomes in cell division 1-like...
ANKRD36               0.005   PREDICTED: ankyrin repeat domain 36 
FAM83B                0.005   hypothetical protein LOC222584 
ANKRD36               0.004   PREDICTED: ankyrin repeat domain 36 
DDX51                 0.004   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
EPB41L4A              0.004   erythrocyte protein band 4.1-like 4 
KIAA1522              0.004   hypothetical protein LOC57648 
ARID4B                0.004   AT rich interactive domain 4B isoform 1 
LOC100293110          0.004   PREDICTED: hypothetical protein 
ABCF1                 0.004   ATP-binding cassette, sub-family F, member 1 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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