Guide to the Human Genome
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Name: LOC100293729 Sequence: fasta or formatted (219aa) NCBI GI: 239755536
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         28           3
 C cysteine            0.5          1           1
 D aspartate           2.3          5           1
 E glutamate           8.2         18           2
 F phenylalanine       2.3          5           1
 G glycine             9.1         20           2
 H histidine           5.5         12           2
 I isoleucine          3.2          7           1
 K lysine              1.4          3           1
 L leucine            15.1         33           2
 M methionine          0.5          1           1
 N asparagine          0.9          2           1
 P proline            10.0         22           1
 Q glutamine           8.2         18           2
 R arginine            2.3          5           1
 S serine              3.7          8           1
 T threonine           2.7          6           1
 V valine             10.0         22           3
 W tryptophan          0.9          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291350          1.000   PREDICTED: hypothetical protein XP_002347249 
LOC100288909          1.000   PREDICTED: hypothetical protein XP_002343114 
NFKBID                0.019   nuclear factor of kappa light polypeptide gene enhan...
LOC100293110          0.017   PREDICTED: hypothetical protein 
LAMP3                 0.015   lysosomal-associated membrane protein 3 
C19orf35              0.015   hypothetical protein LOC374872 
LOC100133070          0.015   PREDICTED: hypothetical protein 
LOC100133070          0.015   PREDICTED: hypothetical protein 
LOC100133070          0.015   PREDICTED: hypothetical protein 
SEC16A                0.012   SEC16 homolog A 
MUC12                 0.012   PREDICTED: mucin 12 
LOC100133714          0.012   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.012   PREDICTED: mucin 12 
LRRC29                0.010   F-box and leucine-rich repeat protein 9 
LRRC29                0.010   F-box and leucine-rich repeat protein 9 
LOC100288562          0.007   PREDICTED: hypothetical protein XP_002342903 
LOC100288527          0.007   PREDICTED: hypothetical protein XP_002342902 
LOC100288500          0.007   PREDICTED: hypothetical protein XP_002342901 
LOC100288470          0.007   PREDICTED: hypothetical protein XP_002342900 
PLXNB1                0.007   plexin B1 
PLXNB1                0.007   plexin B1 
R3HDM1                0.007   R3H domain containing 1 
CDK8                  0.007   cyclin-dependent kinase 8 
CDC2L6                0.007   cell division cycle 2-like 6 (CDK8-like) 
NUBP2                 0.007   nucleotide binding protein 2 (MinD homolog, E. coli) ...
REXO1L1               0.007   exonuclease GOR 
LOC100293662          0.007   PREDICTED: hypothetical protein 
NSUN4                 0.007   NOL1/NOP2/Sun domain family 4 protein 
NECAB2                0.007   neuronal calcium-binding protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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