Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239755429

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755429 PREDICTED: hypothetical protein [Homo sapiens]
         (104 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755429 PREDICTED: hypothetical protein [Homo sapiens]           227   2e-60
gi|239749885 PREDICTED: hypothetical protein XP_002347195 [Homo ...   227   2e-60
gi|239744187 PREDICTED: hypothetical protein XP_002343051 [Homo ...   227   2e-60
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]       41   2e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni...    37   0.004
gi|166795252 hypothetical protein LOC23359 [Homo sapiens]              35   0.010
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo...    35   0.017
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo...    35   0.017
gi|5032105 small optic lobes [Homo sapiens]                            35   0.017
gi|169183864 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|169179784 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|169180175 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|4507103 small nuclear RNA activating complex, polypeptide 2, ...    34   0.028
gi|33186895 selenoprotein V [Homo sapiens]                             33   0.037
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         33   0.063
gi|89941470 ankyrin repeat domain 34 [Homo sapiens]                    32   0.11 
gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3...    32   0.14 
gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2...    32   0.14 
gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1...    32   0.14 
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    32   0.14 
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    32   0.14 
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ...    32   0.14 
gi|116284392 mucin 2 precursor [Homo sapiens]                          32   0.14 
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]              32   0.14 
gi|62000702 diacylglycerol kinase kappa [Homo sapiens]                 32   0.14 
gi|205277425 immunoglobulin superfamily, member 9 isoform a [Hom...    32   0.14 
gi|205277423 immunoglobulin superfamily, member 9 isoform b [Hom...    32   0.14 
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap...    32   0.14 
gi|55741655 anoctamin 8 [Homo sapiens]                                 31   0.18 

>gi|239755429 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 104

 Score =  227 bits (578), Expect = 2e-60
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG 60
           MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG
Sbjct: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG 60

Query: 61  NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW 104
           NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW
Sbjct: 61  NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW 104


>gi|239749885 PREDICTED: hypothetical protein XP_002347195 [Homo
           sapiens]
          Length = 104

 Score =  227 bits (578), Expect = 2e-60
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG 60
           MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG
Sbjct: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG 60

Query: 61  NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW 104
           NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW
Sbjct: 61  NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW 104


>gi|239744187 PREDICTED: hypothetical protein XP_002343051 [Homo
           sapiens]
          Length = 104

 Score =  227 bits (578), Expect = 2e-60
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG 60
           MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG
Sbjct: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG 60

Query: 61  NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW 104
           NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW
Sbjct: 61  NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRGTWW 104


>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
          Length = 1024

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 15  PLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGN-----TVRHAAPS 69
           P  P  W   GP+P S   S+  +     +LLR    PG   + LG      T     PS
Sbjct: 19  PRCPRRWLPEGPVPQSPPASMYGSTG---SLLRRVAGPGPRGRELGRVTAPCTPLRGPPS 75

Query: 70  PRWSPTPWWPVCTPRSPRPGPRPSRAVMQ 98
           PR +P+PW P      P PG + S  + +
Sbjct: 76  PRVAPSPWAPSSPTGQPPPGAQSSVVIFR 104



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 4   SPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG--- 60
           S G + P    P PP   + +G   + G  +  +        LR  R   D+ ++L    
Sbjct: 251 SSGAKPPEQAPPSPPGVGSRQGSGVAVGRAAKYSETDLDTVPLRCYRET-DIDEVLAERE 309

Query: 61  --NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPS 93
             ++   + PS    P   +P      P PGP PS
Sbjct: 310 EADSAIESQPSSEGPPGTAYPPAPRPGPLPGPHPS 344


>gi|163965366 nascent polypeptide-associated complex alpha subunit
           isoform a [Homo sapiens]
          Length = 2078

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)

Query: 66  AAPSPRWSPTPWWPVCTPRSPRPGP 90
           A PSP+W+PTP  P  TP SP+ GP
Sbjct: 955 ATPSPKWAPTP--PAATPPSPKGGP 977



 Score = 35.0 bits (79), Expect = 0.013
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 18  PTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVRHAAPSPRWSPTPW 77
           PT   V  P P  G    + A  +  AL  +  +P             A+PSP+ +PTP 
Sbjct: 886 PTPSVVNLPFPKEG--PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTP- 942

Query: 78  WPVCTPRSPRPGP 90
            P  TP SP+ GP
Sbjct: 943 -PAATPPSPKGGP 954



 Score = 32.3 bits (72), Expect = 0.082
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

Query: 6    GLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVRH 65
            GL  P P+    PT+     P P  GL + S   A            G +          
Sbjct: 1185 GLATPSPKGA--PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL---------- 1232

Query: 66   AAPSPRWSPTPWWPVCTPRSPRPGP 90
            A PSP+ +PT   P  TP SP+ GP
Sbjct: 1233 ATPSPKGAPTT--PAATPPSPKGGP 1255



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 66   AAPSPRWSPTPWWPVCTPRSPRPGP 90
            A PSP+ +PTP  P  TP SP+ GP
Sbjct: 978  ATPSPKGAPTP--PAATPPSPKGGP 1000



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 20/92 (21%)

Query: 12   PRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVRHA----- 66
            P++ L P + TV  P  +  + +   A A   +  +   +P  VT    +T + A     
Sbjct: 1544 PKEALIPPAMTVPSPKKTPAIPTPKEAPATPSS--KEASSPPAVTP---STYKGAPSPKE 1598

Query: 67   --------APSPRWSPTPWWPVCTPRSPRPGP 90
                    +PSP+ +PTP  P  TP SP  GP
Sbjct: 1599 LLIPPAVTSPSPKEAPTP--PAVTPPSPEKGP 1628



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 66   AAPSPRWSPTPWWPVCTPRSPRPGP 90
            A PSP+ +PTP  P  TP SP+  P
Sbjct: 1001 ATPSPKGAPTP--PAVTPPSPKGSP 1023



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 66   AAPSPRWSPTPWWPVCTPRSPRPGP 90
            A PS + +PTP  P  TP SP+ GP
Sbjct: 1072 ATPSLKGAPTP--PAATPPSPKGGP 1094



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 2    AVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRR--TPGDVTQI- 58
            A++P   +  P  P P    T    +P S   + +T   R  A   S+   TP  VT + 
Sbjct: 1383 AMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVS 1442

Query: 59   LGNTVRHAAP-----SPRWSPTPWWPVCTPRSPRPGPRPSR 94
            L      +AP     +P     P  P  TP SP+  P P +
Sbjct: 1443 LKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQ 1483


>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
          Length = 539

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 4   SPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQ------ALLRSRRTPGDVTQ 57
           SPGL  P     LPP    V G  P+S +TS+    A         +   S   P D T 
Sbjct: 285 SPGLLYPAE---LPPPYEAVVGQPPASQVTSIGQQVAESSSGDPNTSAGFSTPVPADSTS 341

Query: 58  ILGNTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPSRAVMQDRG 101
           +L   V     +P  SP+P  PV  P    P   P     +D G
Sbjct: 342 LL---VSEGTATPGSSPSPDGPVGAPAPSEPALPPGHVSPEDPG 382


>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
           sapiens]
          Length = 1077

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 2   AVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQAL---LRSRRTPGDVTQI 58
           A + G   P    P P  S +     PSS  ++ +TA +  Q +       +TP     +
Sbjct: 253 AQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSV 312

Query: 59  LGNTVRHAAPSPRWSPTPWWP-----VCTPRSPRPGPRPSRAV 96
              TV  + P+P  +P    P        P  P   P+P+ A+
Sbjct: 313 ATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPTTAI 355


>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
           sapiens]
          Length = 1098

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 2   AVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQAL---LRSRRTPGDVTQI 58
           A + G   P    P P  S +     PSS  ++ +TA +  Q +       +TP     +
Sbjct: 253 AQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSV 312

Query: 59  LGNTVRHAAPSPRWSPTPWWP-----VCTPRSPRPGPRPSRAV 96
              TV  + P+P  +P    P        P  P   P+P+ A+
Sbjct: 313 ATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPTTAI 355


>gi|5032105 small optic lobes [Homo sapiens]
          Length = 1086

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 3   VSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAA----ARGQALLRSRRTPG----- 53
           V P L+ P+P    P  S   RG    SG    S  A     +  ++L    T G     
Sbjct: 251 VPPQLQPPVPEAAQPSPSAGCRGAPQGSGWAGASRLAELLSGKRLSVLEEEATEGGTSRV 310

Query: 54  ---------DVTQILGNTVRHAAPSPRWSPTPWWPV--CTPRSPRPGPRPS 93
                    D+  + G+TVR+   SP       W    CT R+P   PR S
Sbjct: 311 EAGSSTSGSDIIDLAGDTVRYTPASPSSPDFTTWSCAKCTLRNPTVAPRCS 361


>gi|169183864 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 134

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 19/103 (18%)

Query: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVST----AAARGQALLRSRRTPGDVT 56
           +A  PG R+   R   P  S T RGP PS+  T  ST      A+  +  R R T GDVT
Sbjct: 25  VARQPGRRKDCAR-VYPGRSCTPRGPAPSAAGTGASTWPRGCPAQAHSQGRIRPTAGDVT 83

Query: 57  QI-----------LGNTVRHAAPSPRWSPTPWWPVCTPRSPRP 88
            +           +  +++    SP   P   +  C P SP P
Sbjct: 84  ALQDAVGCSDLTAVEGSIQCETGSPECCP---FSSCAPASPSP 123


>gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 181

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 14/86 (16%)

Query: 15  PLPPTSWTV-------RGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG------N 61
           PLPPT   V       RGPLP    T +++ A RGQ      ++P    ++ G       
Sbjct: 50  PLPPTDCVVLSQTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLG 109

Query: 62  TVRHAAPSPRWSPTPWWPVCTPRSPR 87
               A   P     P W   TPRSPR
Sbjct: 110 GSEEAEDGPESRSAPPWS-HTPRSPR 134


>gi|169179784 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 134

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 19/103 (18%)

Query: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVST----AAARGQALLRSRRTPGDVT 56
           +A  PG R+   R   P  S T RGP PS+  T  ST      A+  +  R R T GDVT
Sbjct: 25  VARQPGRRKDCAR-VYPGRSCTPRGPAPSAAGTGASTWPRGCPAQAHSQGRIRPTAGDVT 83

Query: 57  QI-----------LGNTVRHAAPSPRWSPTPWWPVCTPRSPRP 88
            +           +  +++    SP   P   +  C P SP P
Sbjct: 84  ALQDAVGCSDLTAVEGSIQCETGSPECCP---FSSCAPASPSP 123


>gi|169180175 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 134

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 19/103 (18%)

Query: 1   MAVSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVST----AAARGQALLRSRRTPGDVT 56
           +A  PG R+   R   P  S T RGP PS+  T  ST      A+  +  R R T GDVT
Sbjct: 25  VARQPGRRKDCAR-VYPGRSCTPRGPAPSAAGTGASTWPRGCPAQAHSQGRIRPTAGDVT 83

Query: 57  QI-----------LGNTVRHAAPSPRWSPTPWWPVCTPRSPRP 88
            +           +  +++    SP   P   +  C P SP P
Sbjct: 84  ALQDAVGCSDLTAVEGSIQCETGSPECCP---FSSCAPASPSP 123


>gi|4507103 small nuclear RNA activating complex, polypeptide 2,
           45kDa [Homo sapiens]
          Length = 334

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 6   GLREPLPRDPLPPTS---WT-----VRGPLPSSGLTSVST----AAARGQALLRSRRTPG 53
           GL+ P  R+  PP     WT     + GPL  +   + S     AA     LL S+  P 
Sbjct: 85  GLQGPRRREAQPPAPIEVWTDLAEKITGPLEEALAVAFSQVLTIAATEPVTLLHSK--PP 142

Query: 54  DVTQILGNTVRHAAPSPRWSPTPWWPVCTPRSPRPGPR 91
             TQ  G  +  +AP  +  P P  P   P +P   PR
Sbjct: 143 KPTQARGKPLLLSAPGGQEDPAPEIPSSAPAAPSSAPR 180


>gi|33186895 selenoprotein V [Homo sapiens]
          Length = 346

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 8   REPLP-RDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDV-----TQILGN 61
           R P P R P P     VR   P   LT V T +  G + L     P  +     T  L  
Sbjct: 26  RTPTPLRTPTP-----VRTRTPIRTLTPVLTPSPAGTSPLVLTPAPAQIPTLVPTPALAR 80

Query: 62  TVRHAAP-SPRWSPTPWWPVCTPRSPRPGPRPSRAV 96
             R   P +P W PTP       R+P P P P+R +
Sbjct: 81  IPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTL 116


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 13  RDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVRHAAPSPRW 72
           R P P        P P S     S+ +  G     +++ P   +      V+  +PS  W
Sbjct: 726 RTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSP-----VQSQSPSTNW 780

Query: 73  SPTPWWPVCTPRSPRPGPRPSRAVMQDRG 101
           SP    PV   +SP P P P R   Q+ G
Sbjct: 781 SPAV--PVKKAKSPTPSPSPPRNSDQEGG 807



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 4   SPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVS-TAAARGQALLRSR---RTPGDVTQIL 59
           SP  R P  R P PP     R P+     +S S + ++   +  RSR   + P   T   
Sbjct: 322 SPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSP 381

Query: 60  GNTVRHAAPS---PRWSPTPWWPVCTPRSPRPGPRPSRA 95
               R  +PS   PR    P  P   P   R  P P ++
Sbjct: 382 PRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQS 420


>gi|89941470 ankyrin repeat domain 34 [Homo sapiens]
          Length = 496

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 4   SPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTV 63
           SPG+ +P P  P P       G   S     + TA   G+ +L  R    +  +   +  
Sbjct: 165 SPGVEDPAPASPSP-------GFCTSPSEIQLQTAGGGGRGMLSPRAQEEEEKR---DVF 214

Query: 64  RHAAPSPRWSPTPWWPVCTPRSPRPGPRP 92
               P P   P+P  P+  P+ PR  P+P
Sbjct: 215 EFPLPKPPDDPSPSEPL--PKPPRHPPKP 241


>gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3
           [Homo sapiens]
          Length = 633

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 19  TSWTVRGPLPSSGLTSVSTAAARGQALLRS---RRTPGDVTQILG----NTVRHAAPSPR 71
           T+W    PLPS G T+   ++    A   +   R+ P   +  L      +  H+ P   
Sbjct: 100 TAWHPPAPLPSPGTTAPRPSSIPAPAEAEAWSPRKLPSSASTFLSPAFPGSQTHSGPELG 159

Query: 72  WSPTP--WW---PVCTPRSPRPGPRPSRAVMQ 98
             P+P   W   P   P S +PGP  S +++Q
Sbjct: 160 LVPSPASLWPPPPSPAPSSTKPGPESSVSLLQ 191


>gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2
           [Homo sapiens]
          Length = 682

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 19  TSWTVRGPLPSSGLTSVSTAAARGQALLRS---RRTPGDVTQILG----NTVRHAAPSPR 71
           T+W    PLPS G T+   ++    A   +   R+ P   +  L      +  H+ P   
Sbjct: 100 TAWHPPAPLPSPGTTAPRPSSIPAPAEAEAWSPRKLPSSASTFLSPAFPGSQTHSGPELG 159

Query: 72  WSPTP--WW---PVCTPRSPRPGPRPSRAVMQ 98
             P+P   W   P   P S +PGP  S +++Q
Sbjct: 160 LVPSPASLWPPPPSPAPSSTKPGPESSVSLLQ 191


>gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1
           [Homo sapiens]
          Length = 712

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 19  TSWTVRGPLPSSGLTSVSTAAARGQALLRS---RRTPGDVTQILG----NTVRHAAPSPR 71
           T+W    PLPS G T+   ++    A   +   R+ P   +  L      +  H+ P   
Sbjct: 100 TAWHPPAPLPSPGTTAPRPSSIPAPAEAEAWSPRKLPSSASTFLSPAFPGSQTHSGPELG 159

Query: 72  WSPTP--WW---PVCTPRSPRPGPRPSRAVMQ 98
             P+P   W   P   P S +PGP  S +++Q
Sbjct: 160 LVPSPASLWPPPPSPAPSSTKPGPESSVSLLQ 191


>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 5   PGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVR 64
           P +  P P    PP       P P+    +   AA    A+L     P          V 
Sbjct: 126 PSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVA 185

Query: 65  HAAPSPRWSPTPWWPVCTPRSPRPGPRPSRA 95
             AP+P  +P P        +P P P P  A
Sbjct: 186 APAPAPAPAPAP--------APAPAPAPDAA 208


>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 5   PGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVR 64
           P +  P P    PP       P P+    +   AA    A+L     P          V 
Sbjct: 126 PSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVA 185

Query: 65  HAAPSPRWSPTPWWPVCTPRSPRPGPRPSRA 95
             AP+P  +P P        +P P P P  A
Sbjct: 186 APAPAPAPAPAP--------APAPAPAPDAA 208


>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
           sapiens]
          Length = 316

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 5   PGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVR 64
           P +  P P    PP       P P+    +   AA    A+L     P          V 
Sbjct: 137 PSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVA 196

Query: 65  HAAPSPRWSPTPWWPVCTPRSPRPGPRPSRA 95
             AP+P  +P P        +P P P P  A
Sbjct: 197 APAPAPAPAPAP--------APAPAPAPDAA 219


>gi|116284392 mucin 2 precursor [Homo sapiens]
          Length = 5179

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 68   PSPRWS-PTPWWPVCTPRSPRPGPRPSRA-----VMQDRGTWW 104
            P+P  S PTP  P  TP  P PG +P          Q+  TWW
Sbjct: 4384 PTPSKSTPTPSKPSSTPSKPTPGTKPPECPDFDPPRQENETWW 4426



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 10   PLPRDPLPPTSWTVRGP---LPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVRHA 66
            P    P PPT+ T   P    PS   T+  T        L    TP              
Sbjct: 1597 PPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPT-STTTLPPTTTPSPPPTTTTTPPPTT 1655

Query: 67   APSPRWSPTPWWPVCTPRSPRPGPRPSRAV 96
             PSP  + TP  P+ T  +P P   PS  +
Sbjct: 1656 TPSPPTTTTPSPPITTTTTPPPTTTPSSPI 1685



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 25/87 (28%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 10   PLPRDPLPPTSWTVRGP---LPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVRHA 66
            P    P PPT+ T   P    PS   T+  T        L    TP              
Sbjct: 1518 PPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPT-STTTLPPTTTPSPPPTTTTTPPPTT 1576

Query: 67   APSPRWSPTPWWPVCTPRSPRPGPRPS 93
             PSP  + TP  P  T  +P P   PS
Sbjct: 1577 TPSPPTTTTPSPPTITTTTPPPTTTPS 1603



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 10   PLPRDPLPPTSWTVRGP---LPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVRHA 66
            P    P PP + T   P    PSS +T+  +          +  TP   T          
Sbjct: 1660 PTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTT------TMTTPSPTTTPSSPITTTT 1713

Query: 67   APSPRWSPTPWWPVCTPRSPRPGPRPSRAVM 97
             PS   +P+P     T  SP   P P    M
Sbjct: 1714 TPSSTTTPSPPPTTMTTPSPTTTPSPPTTTM 1744


>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
          Length = 2639

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 68   PSPRWS-PTPWWPVCTPRSPRPGPRPSRA-----VMQDRGTWW 104
            P+P  S PTP  P  TP  P PG +P          Q+  TWW
Sbjct: 1844 PTPSKSTPTPSKPSSTPSKPTPGTKPPECPDFDPPRQENETWW 1886


>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
          Length = 1271

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 9   EPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAAR----GQALLRSRRTPGDVTQILGNTVR 64
           EP P     P + +   P P   L SV   A          L    TP  VT++      
Sbjct: 108 EPAPEPAPEPATESAPEPTPEPALESVPEPAPELTPEVAPELAPEPTPEPVTELAPEFCP 167

Query: 65  HAAPSPRWSPTPWWPVC--------TPRSPRPGPRPS 93
            AAP  R SP P    C           SP P P PS
Sbjct: 168 EAAPEFRPSPAPCLLQCPVDTRERGLKTSPSPSPSPS 204


>gi|205277425 immunoglobulin superfamily, member 9 isoform a [Homo
           sapiens]
          Length = 1179

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 21/99 (21%)

Query: 5   PGLREPLPRDPL--PPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNT 62
           P  R PLP +P+   P    V GP          T AA  +   R +  P    Q L  +
Sbjct: 834 PSSRGPLPLEPICRGPDGRFVMGP----------TVAAPQERSGREQAEPRTPAQRLARS 883

Query: 63  VRHAAPSPRWSPTPWW---------PVCTPRSPRPGPRP 92
              ++ SP  +P P           P   P SP PGP P
Sbjct: 884 FDCSSSSPSGAPQPLCIEDISPVAPPPAAPPSPLPGPGP 922


>gi|205277423 immunoglobulin superfamily, member 9 isoform b [Homo
           sapiens]
          Length = 1163

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 21/99 (21%)

Query: 5   PGLREPLPRDPL--PPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNT 62
           P  R PLP +P+   P    V GP          T AA  +   R +  P    Q L  +
Sbjct: 818 PSSRGPLPLEPICRGPDGRFVMGP----------TVAAPQERSGREQAEPRTPAQRLARS 867

Query: 63  VRHAAPSPRWSPTPWW---------PVCTPRSPRPGPRP 92
              ++ SP  +P P           P   P SP PGP P
Sbjct: 868 FDCSSSSPSGAPQPLCIEDISPVAPPPAAPPSPLPGPGP 906


>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
          Length = 2161

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 3    VSPGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGD--VTQILG 60
            ++PG   PLP  P P T      PLP     +V+ A     +   S  +      T   G
Sbjct: 1584 LTPGPPHPLPDTPAPAT------PLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQG 1637

Query: 61   NTVRHAAPSPRWSPTPWWPVCTPRSPRPGPRP 92
             +     P P   P P  P   P +P+PGP P
Sbjct: 1638 ASAAPGDPHPPGPPAPAAP--APAAPQPGPDP 1667



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 12   PRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVRHAAPSPR 71
            P+ PLPP        LP+    S + AAA G     +  +      + G       P  R
Sbjct: 1945 PKPPLPP--------LPTGTGVSPTAAAAPGATSPSASSSSTSTRHLQGVEFEMRPPLLR 1996

Query: 72   WSPTPWWPVCTPRSPRPGPRPS 93
             +P+P     +     P PRPS
Sbjct: 1997 RAPSPSLLPASEHKVSPAPRPS 2018



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 5    PGLREPLPRDPLPPTSWTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILGNTVR 64
            P +  P  ++ +P  +  ++ P  SS   S   ++   +   +   T G      G    
Sbjct: 1142 PAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGG-----GGGGS 1196

Query: 65   HAAPSPRWSPTP--WWPVCTPRSP 86
              +P+P  SP P    PV TP SP
Sbjct: 1197 SPSPAPAMSPVPPSPSPVPTPASP 1220


>gi|55741655 anoctamin 8 [Homo sapiens]
          Length = 1232

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 10   PLPRDPLPPTS-WTVRGPLPSSGLTSVSTAAARGQALLRSRRTPGDVT-------QILGN 61
            PLPR P PP   W   GP    G       AA  QAL  +   P  +         + G+
Sbjct: 1137 PLPRPPTPPAGCWQWDGPWGCGG-----EGAAPRQALAAAECPPCAMAGPPPAPQPLPGD 1191

Query: 62   TVRHAAPSPRWSPTPWWPVCTPRSPRPGPRPS 93
               ++ P P   PT   P+ TP +P P P PS
Sbjct: 1192 ASFYSLPPPPLPPTS-DPLETP-APSPSPSPS 1221



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 9/38 (23%)

Query: 1    MAVSPGLREPLPRD---------PLPPTSWTVRGPLPS 29
            MA  P   +PLP D         PLPPTS  +  P PS
Sbjct: 1178 MAGPPPAPQPLPGDASFYSLPPPPLPPTSDPLETPAPS 1215


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,079,455
Number of Sequences: 37866
Number of extensions: 372965
Number of successful extensions: 2553
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 2171
Number of HSP's gapped (non-prelim): 570
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press