Guide to the Human Genome
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Name: LOC100131778 Sequence: fasta or formatted (134aa) NCBI GI: 169183864
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {134aa} PREDICTED: hypothetical protein
alt mRNA {134aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         18           2
 C cysteine            6.7          9           2
 D aspartate           3.0          4           1
 E glutamate           2.2          3           1
 F phenylalanine       0.7          1           1
 G glycine            11.2         15           3
 H histidine           1.5          2           1
 I isoleucine          2.2          3           1
 K lysine              1.5          2           1
 L leucine             3.0          4           1
 M methionine          1.5          2           1
 N asparagine          2.2          3           1
 P proline            11.2         15           1
 Q glutamine           5.2          7           1
 R arginine            9.7         13           2
 S serine             10.4         14           2
 T threonine           6.0          8           1
 V valine              6.0          8           1
 W tryptophan          0.7          1           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131778          1.000   PREDICTED: hypothetical protein 
LOC100131778          1.000   PREDICTED: hypothetical protein 
ABCB10                0.038   ATP-binding cassette, sub-family B, member 10 [Homo...
LOC100292347          0.035   PREDICTED: hypothetical protein 
LOC100290593          0.035   PREDICTED: hypothetical protein XP_002347195 
LOC100289632          0.035   PREDICTED: hypothetical protein XP_002343051 
PKDREJ                0.031   receptor for egg jelly-like protein precursor 
LOC100129781          0.027   PREDICTED: hypothetical protein 
AGAP2                 0.027   centaurin, gamma 1 isoform PIKE-L 
LOC100132234          0.027   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.027   PREDICTED: hypothetical protein LOC100132234 
LOC100290372          0.027   PREDICTED: hypothetical protein XP_002346788 
LOC100132234          0.027   PREDICTED: hypothetical protein LOC100132234 
LOC100288606          0.027   PREDICTED: hypothetical protein XP_002342652 
RUSC1                 0.023   RUN and SH3 domain containing 1 isoform b 
RUSC1                 0.023   RUN and SH3 domain containing 1 isoform a 
CHST2                 0.023   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...
PKD1L1                0.023   polycystin-1L1 
LOC388553             0.023   PREDICTED: similar to hCG1645909 
LOC100134365          0.023   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
LOC388553             0.023   PREDICTED: similar to hCG1645909 
ANKRD36               0.023   PREDICTED: ankyrin repeat domain 36 
LOC388553             0.023   PREDICTED: similar to hCG1645909 
CDSN                  0.023   corneodesmosin precursor 
CAMKV                 0.023   CaM kinase-like vesicle-associated 
LOC728650             0.019   PREDICTED: hypothetical protein 
LOC729991-MEF2B       0.019   myocyte enhancer factor 2B isoform b 
PCLO                  0.019   piccolo isoform 2 
PCLO                  0.019   piccolo isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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