Guide to the Human Genome
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Search of human proteins with 239755410

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]           380   e-106
gi|169201378 PREDICTED: hypothetical protein [Homo sapiens]           378   e-105
gi|169188835 PREDICTED: hypothetical protein [Homo sapiens]           378   e-105
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...    39   0.003
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi...    39   0.003
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi...    39   0.003
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]          38   0.004
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]            38   0.006
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      37   0.009
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    36   0.021
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    36   0.021
gi|169217823 PREDICTED: similar to IQ motif and SEC7 domain-cont...    35   0.028
gi|169214926 PREDICTED: similar to IQ motif and SEC7 domain-cont...    35   0.028
gi|113431383 PREDICTED: hypothetical protein [Homo sapiens]            35   0.028
gi|113428915 PREDICTED: similar to IQ motif and SEC7 domain-cont...    35   0.028
gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo ...    35   0.028
gi|122937271 WAS protein homolog associated with actin, golgi me...    35   0.028
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]            35   0.036
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]            35   0.036
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]            35   0.036
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    35   0.036
gi|7662486 ring finger protein 44 [Homo sapiens]                       35   0.036
gi|236459851 ubinuclein 2 [Homo sapiens]                               35   0.047
gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens]         35   0.047
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]       35   0.047
gi|68163572 hypothetical protein LOC84077 [Homo sapiens]               35   0.047
gi|239757043 PREDICTED: functional smad suppressing element 18 [...    34   0.061
gi|239751555 PREDICTED: functional smad suppressing element 18 [...    34   0.061
gi|239746067 PREDICTED: functional smad suppressing element 18 [...    34   0.061
gi|11386183 WAS protein family, member 2 [Homo sapiens]                34   0.061

>gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score =  380 bits (977), Expect = e-106
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
           MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS
Sbjct: 1   MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60

Query: 61  SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
           SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR
Sbjct: 61  SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120

Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
           LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI
Sbjct: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180

Query: 181 WRR 183
           WRR
Sbjct: 181 WRR 183


>gi|169201378 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score =  378 bits (971), Expect = e-105
 Identities = 182/183 (99%), Positives = 182/183 (99%)

Query: 1   MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
           MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS
Sbjct: 1   MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60

Query: 61  SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
           SENAVNSRQGPWRLQFDLNLQPRRAVG AELRPRQLPVPHRALLAAAEFLRLLPPPVWRR
Sbjct: 61  SENAVNSRQGPWRLQFDLNLQPRRAVGRAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120

Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
           LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI
Sbjct: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180

Query: 181 WRR 183
           WRR
Sbjct: 181 WRR 183


>gi|169188835 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score =  378 bits (971), Expect = e-105
 Identities = 182/183 (99%), Positives = 182/183 (99%)

Query: 1   MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
           MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS
Sbjct: 1   MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60

Query: 61  SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
           SENAVNSRQGPWRLQFDLNLQPRRAVG AELRPRQLPVPHRALLAAAEFLRLLPPPVWRR
Sbjct: 61  SENAVNSRQGPWRLQFDLNLQPRRAVGRAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120

Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
           LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI
Sbjct: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180

Query: 181 WRR 183
           WRR
Sbjct: 181 WRR 183


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
           [Homo sapiens]
          Length = 2059

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 115 PPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPR-RAPRRHLGSRTLRRRP 173
           PP      P    P P PPPP PP PD   +R+L S+   + R R P++   ++  + R 
Sbjct: 67  PPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRK 126

Query: 174 RSR 176
           R +
Sbjct: 127 RKK 129



 Score = 27.3 bits (59), Expect = 7.5
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 115  PPVWRRLTPH---LRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
            P +  RL P    L   +P  P    P P +   R  S++  +   R   + L  +  R 
Sbjct: 1663 PSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1722

Query: 172  RPRSRDGKIWRR 183
            RP    G + +R
Sbjct: 1723 RPEGETGDLGKR 1734


>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
           sapiens]
          Length = 678

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 85  AVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVW--RRLTPHLRQPLPTPPPPAPPRP 140
           A G A++R  ++ V        +  L    PP    RR +P   +P P PPPPAPPRP
Sbjct: 51  APGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108


>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 85  AVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVW--RRLTPHLRQPLPTPPPPAPPRP 140
           A G A++R  ++ V        +  L    PP    RR +P   +P P PPPPAPPRP
Sbjct: 51  APGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108


>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
          Length = 581

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 28  AASAVGL-HQGANVETKMDRAGIPLLSRTFAGVSSENAVNSRQGPWRLQFDLNLQPRRAV 86
           AASA  L   G +   ++D    P L+RT +  S  +      G      D+++  R   
Sbjct: 242 AASAASLTDMGGSAGRELDAGRKPKLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGL- 300

Query: 87  GTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPD----F 142
            T+   P   P P R+L    +    LP  V         Q  P PPPP P  PD     
Sbjct: 301 -TSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAFPRI 359

Query: 143 AKVRVLSSSTHSRP 156
           A +R  + S HS+P
Sbjct: 360 APIRA-AESLHSQP 372



 Score = 27.7 bits (60), Expect = 5.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 126 RQPLPTPPPPAPPRP 140
           +QP P PPPP P RP
Sbjct: 186 QQPPPPPPPPGPLRP 200


>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 182

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 43/130 (33%), Positives = 49/130 (37%), Gaps = 43/130 (33%)

Query: 12  APPPSPL-PFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVSSENAVNSRQG 70
           APPP PL P   S  G + S+ G   G+        AG P L    A  S+    + R G
Sbjct: 40  APPPPPLAPSSSSSSGSSGSSGGGGSGS--------AGQPTLGSMLAVGSAARRASERAG 91

Query: 71  PWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLP 130
                        RA GTA LR R+ P P            LLPPP           P P
Sbjct: 92  G------------RAGGTA-LRAREPPPP------------LLPPP---------SPPQP 117

Query: 131 TPPPPAPPRP 140
            P  PA PRP
Sbjct: 118 GPKGPASPRP 127


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 41/145 (28%), Positives = 53/145 (36%), Gaps = 27/145 (18%)

Query: 21  CVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVSSENAVNSRQGPWRLQFDLNL 80
           C S P  A  AV    G  V TK      PL       V+       RQ     Q+   +
Sbjct: 339 CFSSPEEATKAVTEMNGRIVATK------PLY------VALAQRKEERQAHLTNQYMQRM 386

Query: 81  QPRRAVGTAELRPRQLPVPHRALLAA-------------AEFLRLLPPPVW--RRLTPHL 125
              RAV    + P Q   P    +AA             ++  +L P P W  +   PH 
Sbjct: 387 ASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHP 446

Query: 126 RQPLPTPPPPAPPRPDFAKVRVLSS 150
            Q +P    PA PRP F+ +R  SS
Sbjct: 447 FQNMPGAIRPAAPRPPFSTMRPASS 471


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 35.8 bits (81), Expect = 0.021
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 50  PLLSRTFAGVSSENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEF 109
           P LS+ +A V  EN   + +    +     +  +    TA L P   P P R    +   
Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITATAVLAPWPRPPPRRF---SPPR 254

Query: 110 LRLLPPPVWRRLTPHLRQPLPTPPPPAPPR-----PDFAKVRVLSSSTHSR 155
             L PPP+WRR  P +R+   +P   +P R     P   + R  SSS  SR
Sbjct: 255 RMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 35.8 bits (81), Expect = 0.021
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 50  PLLSRTFAGVSSENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEF 109
           P LS+ +A V  EN   + +    +     +  +    TA L P   P P R    +   
Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITATAVLAPWPRPPPRRF---SPPR 254

Query: 110 LRLLPPPVWRRLTPHLRQPLPTPPPPAPPR-----PDFAKVRVLSSSTHSR 155
             L PPP+WRR  P +R+   +P   +P R     P   + R  SSS  SR
Sbjct: 255 RMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305


>gi|169217823 PREDICTED: similar to IQ motif and SEC7
           domain-containing protein 3 [Homo sapiens]
          Length = 185

 Score = 35.4 bits (80), Expect = 0.028
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 83  RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
           R  +   E R  +L   +R+L    + L+  PPP    L P    PLP  P  AP     
Sbjct: 33  RERIDELERRLDELSAENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89

Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
           A+  +       +++ H  P R PR+H G      +R P SR
Sbjct: 90  AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131


>gi|169214926 PREDICTED: similar to IQ motif and SEC7
           domain-containing protein 3 [Homo sapiens]
          Length = 185

 Score = 35.4 bits (80), Expect = 0.028
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 83  RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
           R  +   E R  +L   +R+L    + L+  PPP    L P    PLP  P  AP     
Sbjct: 33  RERIDELERRLDELSTENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89

Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
           A+  +       +++ H  P R PR+H G      +R P SR
Sbjct: 90  AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131


>gi|113431383 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 185

 Score = 35.4 bits (80), Expect = 0.028
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 83  RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
           R  +   E R  +L   +R+L    + L+  PPP    L P    PLP  P  AP     
Sbjct: 33  RERIDELERRLDELSAENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89

Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
           A+  +       +++ H  P R PR+H G      +R P SR
Sbjct: 90  AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131


>gi|113428915 PREDICTED: similar to IQ motif and SEC7
           domain-containing protein 3 [Homo sapiens]
          Length = 185

 Score = 35.4 bits (80), Expect = 0.028
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 83  RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
           R  +   E R  +L   +R+L    + L+  PPP    L P    PLP  P  AP     
Sbjct: 33  RERIDELERRLDELSTENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89

Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
           A+  +       +++ H  P R PR+H G      +R P SR
Sbjct: 90  AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131


>gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo
           sapiens]
          Length = 185

 Score = 35.4 bits (80), Expect = 0.028
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 83  RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
           R  +   E R  +L   +R+L    + L+  PPP    L P    PLP  P  AP     
Sbjct: 33  RERIDELERRLDELSAENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89

Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
           A+  +       +++ H  P R PR+H G      +R P SR
Sbjct: 90  AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131


>gi|122937271 WAS protein homolog associated with actin, golgi
           membranes and microtubules [Homo sapiens]
          Length = 809

 Score = 35.4 bits (80), Expect = 0.028
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 16/72 (22%)

Query: 96  LPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSR 155
           +PV  +    ++E L L PPP             P PPPP PP P    +R LSSS+ + 
Sbjct: 622 VPVGDQTHSKSSEELSLPPPPP------------PPPPPPPPPPPPPPPLRALSSSSQA- 668

Query: 156 PRRAPRRHLGSR 167
              A  ++LG R
Sbjct: 669 ---ATHQNLGFR 677


>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 262

 Score = 35.0 bits (79), Expect = 0.036
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 114 PPPVWRRLTPHLRQPLPTPPPP-APPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
           PPP      P    P P PPPP  PP P   +   L   T   P   PRR   SR+L R
Sbjct: 34  PPP------PPPPTPRPPPPPPLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLAR 86


>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 262

 Score = 35.0 bits (79), Expect = 0.036
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 114 PPPVWRRLTPHLRQPLPTPPPP-APPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
           PPP      P    P P PPPP  PP P   +   L   T   P   PRR   SR+L R
Sbjct: 34  PPP------PPPPTPRPPPPPPLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLAR 86


>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 262

 Score = 35.0 bits (79), Expect = 0.036
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 114 PPPVWRRLTPHLRQPLPTPPPP-APPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
           PPP      P    P P PPPP  PP P   +   L   T   P   PRR   SR+L R
Sbjct: 34  PPP------PPPPTPRPPPPPPLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLAR 86


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
            sapiens]
          Length = 2715

 Score = 35.0 bits (79), Expect = 0.036
 Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 77   DLNLQPRRAVGTAELRPRQLPVPHRAL---LAAAEFLRLLPPP-VWRRLTPHLRQ----- 127
            D    PRR+   + L PR  P P R     L  +  LR+ PP  V   LTP   +     
Sbjct: 1905 DFPAPPRRSRRPSPLAPR--PPPSRWASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPG 1962

Query: 128  PLPTPPPPAPPRPDFAKVRVLS 149
            P P+PPPP    PDF  + V+S
Sbjct: 1963 PAPSPPPPEDLGPDFEDMEVVS 1984



 Score = 32.7 bits (73), Expect = 0.18
 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 93  PRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSST 152
           P  LP   R++L    F        W  LT  L  P P PPPP  P P  A     +SS 
Sbjct: 593 PVPLPEKRRSILREPTFR-------WTSLTRELPPPPPAPPPPPAPSPPPAPA---TSSR 642

Query: 153 HSRPRRAPR 161
                RAP+
Sbjct: 643 RPLLLRAPQ 651



 Score = 30.8 bits (68), Expect = 0.68
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 8/34 (23%)

Query: 105 AAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPP 138
           A  E  +L PPP    LTP    P P+PPPP PP
Sbjct: 394 AEKEEAKLPPPP----LTP----PAPSPPPPLPP 419



 Score = 30.4 bits (67), Expect = 0.89
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 113  LPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPR 161
            LPP     + P +    P PPPP PP        VLSS   S PR+A R
Sbjct: 2234 LPPGPLLGVLPVVGVVRPAPPPPPPPL-----TLVLSSGPASPPRQAIR 2277



 Score = 28.5 bits (62), Expect = 3.4
 Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 62  ENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRL 121
           E AV     P   + +  L P      A   P  LP P     + +    L PPP     
Sbjct: 383 ERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPP-----STSPPPPLCPPPP---- 433

Query: 122 TPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRS 175
            P    PLP+PPPP            +  +T SR R  P      R  R   R+
Sbjct: 434 PPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARA 487



 Score = 26.9 bits (58), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 119  RRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRP 156
            + L P LR    + PPPAP     A+++V + S   RP
Sbjct: 1839 QNLDPPLRPDSGSAPPPAPRSFSGARIKVPNYSPSRRP 1876


>gi|7662486 ring finger protein 44 [Homo sapiens]
          Length = 432

 Score = 35.0 bits (79), Expect = 0.036
 Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 29/141 (20%)

Query: 6   ILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVSSENAV 65
           ILH    PPP+P P    QP H A    L Q  +++T+  R  +  L         +N V
Sbjct: 182 ILH---PPPPAPPP----QPTHMAP---LGQFVSLQTQHPRMPLQRL---------DNDV 222

Query: 66  NSR-QGPWRLQFDLNLQPRRAVGTAELRPRQLPVP--HRALLAAAEFLRLLPPPVWRRLT 122
           + R   P    F  +        +  +    LP    H+ L     +  ++P    RRL+
Sbjct: 223 DLRGDQPSLGSFTYSTSAPGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMP----RRLS 278

Query: 123 PH---LRQPLPTPPPPAPPRP 140
                L+QPLP PPPP PP P
Sbjct: 279 TQRYRLQQPLPPPPPPPPPPP 299


>gi|236459851 ubinuclein 2 [Homo sapiens]
          Length = 1347

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 82  PRRAVGTAELRP--RQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPR 139
           PR     ++ +P  R+ P+P R      E  R  PP   +R       P P PPPP PP 
Sbjct: 54  PREPAPRSDAQPPSREKPLPQR------EVSRAEPPMSLQR-----EPPRPEPPPPFPPL 102

Query: 140 PDFAKVRVLSSSTHSRPRRAPR 161
           P        S+S   +P R PR
Sbjct: 103 PLQPPPPRESASRAEQPPRPPR 124



 Score = 27.3 bits (59), Expect = 7.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 127  QPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPR 161
            +PLP+P P A P+P  +    +S+   S+    P+
Sbjct: 1050 KPLPSPKPSASPKPSLSAKPSVSTKLISKSNPTPK 1084


>gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens]
          Length = 1215

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 87   GTAELRPRQLPVPHR-ALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKV 145
            G    +P+ LPVPH  A L+      L P P   RL  HL    P PPP A P    ++ 
Sbjct: 1046 GRTSWQPQSLPVPHHPACLSGLSVPLLQPTPRSVRLC-HLSLRAPLPPPFATPTSCLSQA 1104

Query: 146  RVLSSSTHS 154
              LSSST S
Sbjct: 1105 -CLSSSTLS 1112


>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
          Length = 669

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 127 QPLPTPPPPAPPRPDFAKVRVLSSSTHS-RPRRAPRRHLGSRTLRRRP 173
           QP P+  P  PP+P+F K++  S    S  P++AP    G+ +L+  P
Sbjct: 26  QPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAPLPEFGAVSLKPPP 73


>gi|68163572 hypothetical protein LOC84077 [Homo sapiens]
          Length = 904

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 123 PHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
           P L++PLP PPPPAPPRP        +  +   P  A +      TL R
Sbjct: 89  PTLKKPLP-PPPPAPPRPVLLATTGAAKRSTLSPTMARQVRTHQETLNR 136


>gi|239757043 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 996

 Score = 34.3 bits (77), Expect = 0.061
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPR 157
           L PHL   L  PPPP PP P  A++     + H RPR
Sbjct: 277 LGPHL---LGAPPPPPPPPPPLAELAGAPHAHHKRPR 310



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 112 LLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAK 144
           LL PP           P P PPPP PP P  A+
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709


>gi|239751555 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 34.3 bits (77), Expect = 0.061
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPR 157
           L PHL   L  PPPP PP P  A++     + H RPR
Sbjct: 277 LGPHL---LGAPPPPPPPPPPLAELAGAPHAHHKRPR 310



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 112 LLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAK 144
           LL PP           P P PPPP PP P  A+
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709


>gi|239746067 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 34.3 bits (77), Expect = 0.061
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPR 157
           L PHL   L  PPPP PP P  A++     + H RPR
Sbjct: 277 LGPHL---LGAPPPPPPPPPPLAELAGAPHAHHKRPR 310



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 112 LLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAK 144
           LL PP           P P PPPP PP P  A+
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709


>gi|11386183 WAS protein family, member 2 [Homo sapiens]
          Length = 498

 Score = 34.3 bits (77), Expect = 0.061
 Identities = 15/30 (50%), Positives = 16/30 (53%)

Query: 113 LPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
           LPPP   + T     P P PPPP PP P F
Sbjct: 378 LPPPPLSQPTGGAPPPPPPPPPPGPPPPPF 407



 Score = 27.3 bits (59), Expect = 7.5
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 114 PPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
           PPP      PH     P PPPP PP  D+
Sbjct: 348 PPPSPPSFPPHPDFAAPPPPPP-PPAADY 375


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,870,233
Number of Sequences: 37866
Number of extensions: 617040
Number of successful extensions: 10157
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 6596
Number of HSP's gapped (non-prelim): 2697
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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