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Search of human proteins with 239755410
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755410 PREDICTED: hypothetical protein [Homo sapiens] 380 e-106
gi|169201378 PREDICTED: hypothetical protein [Homo sapiens] 378 e-105
gi|169188835 PREDICTED: hypothetical protein [Homo sapiens] 378 e-105
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 39 0.003
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 39 0.003
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 39 0.003
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens] 38 0.004
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 37 0.009
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 36 0.021
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 36 0.021
gi|169217823 PREDICTED: similar to IQ motif and SEC7 domain-cont... 35 0.028
gi|169214926 PREDICTED: similar to IQ motif and SEC7 domain-cont... 35 0.028
gi|113431383 PREDICTED: hypothetical protein [Homo sapiens] 35 0.028
gi|113428915 PREDICTED: similar to IQ motif and SEC7 domain-cont... 35 0.028
gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo ... 35 0.028
gi|122937271 WAS protein homolog associated with actin, golgi me... 35 0.028
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 35 0.036
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 35 0.036
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 35 0.036
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 35 0.036
gi|7662486 ring finger protein 44 [Homo sapiens] 35 0.036
gi|236459851 ubinuclein 2 [Homo sapiens] 35 0.047
gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens] 35 0.047
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens] 35 0.047
gi|68163572 hypothetical protein LOC84077 [Homo sapiens] 35 0.047
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 34 0.061
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 34 0.061
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 34 0.061
gi|11386183 WAS protein family, member 2 [Homo sapiens] 34 0.061
>gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 380 bits (977), Expect = e-106
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS
Sbjct: 1 MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
Query: 61 SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR
Sbjct: 61 SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI
Sbjct: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
Query: 181 WRR 183
WRR
Sbjct: 181 WRR 183
>gi|169201378 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 378 bits (971), Expect = e-105
Identities = 182/183 (99%), Positives = 182/183 (99%)
Query: 1 MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS
Sbjct: 1 MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
Query: 61 SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
SENAVNSRQGPWRLQFDLNLQPRRAVG AELRPRQLPVPHRALLAAAEFLRLLPPPVWRR
Sbjct: 61 SENAVNSRQGPWRLQFDLNLQPRRAVGRAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI
Sbjct: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
Query: 181 WRR 183
WRR
Sbjct: 181 WRR 183
>gi|169188835 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 378 bits (971), Expect = e-105
Identities = 182/183 (99%), Positives = 182/183 (99%)
Query: 1 MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS
Sbjct: 1 MYFINILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVS 60
Query: 61 SENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
SENAVNSRQGPWRLQFDLNLQPRRAVG AELRPRQLPVPHRALLAAAEFLRLLPPPVWRR
Sbjct: 61 SENAVNSRQGPWRLQFDLNLQPRRAVGRAELRPRQLPVPHRALLAAAEFLRLLPPPVWRR 120
Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI
Sbjct: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRSRDGKI 180
Query: 181 WRR 183
WRR
Sbjct: 181 WRR 183
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 38.5 bits (88), Expect = 0.003
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 115 PPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPR-RAPRRHLGSRTLRRRP 173
PP P P P PPPP PP PD +R+L S+ + R R P++ ++ + R
Sbjct: 67 PPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRK 126
Query: 174 RSR 176
R +
Sbjct: 127 RKK 129
Score = 27.3 bits (59), Expect = 7.5
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 115 PPVWRRLTPH---LRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
P + RL P L +P P P P + R S++ + R + L + R
Sbjct: 1663 PSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1722
Query: 172 RPRSRDGKIWRR 183
RP G + +R
Sbjct: 1723 RPEGETGDLGKR 1734
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 38.5 bits (88), Expect = 0.003
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 85 AVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVW--RRLTPHLRQPLPTPPPPAPPRP 140
A G A++R ++ V + L PP RR +P +P P PPPPAPPRP
Sbjct: 51 APGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 38.5 bits (88), Expect = 0.003
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 85 AVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVW--RRLTPHLRQPLPTPPPPAPPRP 140
A G A++R ++ V + L PP RR +P +P P PPPPAPPRP
Sbjct: 51 APGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108
>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
Length = 581
Score = 38.1 bits (87), Expect = 0.004
Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 28 AASAVGL-HQGANVETKMDRAGIPLLSRTFAGVSSENAVNSRQGPWRLQFDLNLQPRRAV 86
AASA L G + ++D P L+RT + S + G D+++ R
Sbjct: 242 AASAASLTDMGGSAGRELDAGRKPKLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGL- 300
Query: 87 GTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPD----F 142
T+ P P P R+L + LP V Q P PPPP P PD
Sbjct: 301 -TSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAFPRI 359
Query: 143 AKVRVLSSSTHSRP 156
A +R + S HS+P
Sbjct: 360 APIRA-AESLHSQP 372
Score = 27.7 bits (60), Expect = 5.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 126 RQPLPTPPPPAPPRP 140
+QP P PPPP P RP
Sbjct: 186 QQPPPPPPPPGPLRP 200
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 37.7 bits (86), Expect = 0.006
Identities = 43/130 (33%), Positives = 49/130 (37%), Gaps = 43/130 (33%)
Query: 12 APPPSPL-PFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVSSENAVNSRQG 70
APPP PL P S G + S+ G G+ AG P L A S+ + R G
Sbjct: 40 APPPPPLAPSSSSSSGSSGSSGGGGSGS--------AGQPTLGSMLAVGSAARRASERAG 91
Query: 71 PWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLP 130
RA GTA LR R+ P P LLPPP P P
Sbjct: 92 G------------RAGGTA-LRAREPPPP------------LLPPP---------SPPQP 117
Query: 131 TPPPPAPPRP 140
P PA PRP
Sbjct: 118 GPKGPASPRP 127
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 37.0 bits (84), Expect = 0.009
Identities = 41/145 (28%), Positives = 53/145 (36%), Gaps = 27/145 (18%)
Query: 21 CVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVSSENAVNSRQGPWRLQFDLNL 80
C S P A AV G V TK PL V+ RQ Q+ +
Sbjct: 339 CFSSPEEATKAVTEMNGRIVATK------PLY------VALAQRKEERQAHLTNQYMQRM 386
Query: 81 QPRRAVGTAELRPRQLPVPHRALLAA-------------AEFLRLLPPPVW--RRLTPHL 125
RAV + P Q P +AA ++ +L P P W + PH
Sbjct: 387 ASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHP 446
Query: 126 RQPLPTPPPPAPPRPDFAKVRVLSS 150
Q +P PA PRP F+ +R SS
Sbjct: 447 FQNMPGAIRPAAPRPPFSTMRPASS 471
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.021
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 50 PLLSRTFAGVSSENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEF 109
P LS+ +A V EN + + + + + TA L P P P R +
Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITATAVLAPWPRPPPRRF---SPPR 254
Query: 110 LRLLPPPVWRRLTPHLRQPLPTPPPPAPPR-----PDFAKVRVLSSSTHSR 155
L PPP+WRR P +R+ +P +P R P + R SSS SR
Sbjct: 255 RMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.021
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 50 PLLSRTFAGVSSENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEF 109
P LS+ +A V EN + + + + + TA L P P P R +
Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITATAVLAPWPRPPPRRF---SPPR 254
Query: 110 LRLLPPPVWRRLTPHLRQPLPTPPPPAPPR-----PDFAKVRVLSSSTHSR 155
L PPP+WRR P +R+ +P +P R P + R SSS SR
Sbjct: 255 RMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
>gi|169217823 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.028
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 83 RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
R + E R +L +R+L + L+ PPP L P PLP P AP
Sbjct: 33 RERIDELERRLDELSAENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89
Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
A+ + +++ H P R PR+H G +R P SR
Sbjct: 90 AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131
>gi|169214926 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.028
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 83 RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
R + E R +L +R+L + L+ PPP L P PLP P AP
Sbjct: 33 RERIDELERRLDELSTENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89
Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
A+ + +++ H P R PR+H G +R P SR
Sbjct: 90 AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131
>gi|113431383 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.028
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 83 RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
R + E R +L +R+L + L+ PPP L P PLP P AP
Sbjct: 33 RERIDELERRLDELSAENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89
Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
A+ + +++ H P R PR+H G +R P SR
Sbjct: 90 AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131
>gi|113428915 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.028
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 83 RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
R + E R +L +R+L + L+ PPP L P PLP P AP
Sbjct: 33 RERIDELERRLDELSTENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89
Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
A+ + +++ H P R PR+H G +R P SR
Sbjct: 90 AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131
>gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo
sapiens]
Length = 185
Score = 35.4 bits (80), Expect = 0.028
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 83 RRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
R + E R +L +R+L + L+ PPP L P PLP P AP
Sbjct: 33 RERIDELERRLDELSAENRSLWEHQQLLQAQPPP---GLVPPSSAPLPAAPATAPAAAAR 89
Query: 143 AKVRVL------SSSTHSRPRRAPRRHLGS--RTLRRRPRSR 176
A+ + +++ H P R PR+H G +R P SR
Sbjct: 90 AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSR 131
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 35.4 bits (80), Expect = 0.028
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 96 LPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSR 155
+PV + ++E L L PPP P PPPP PP P +R LSSS+ +
Sbjct: 622 VPVGDQTHSKSSEELSLPPPPP------------PPPPPPPPPPPPPPPLRALSSSSQA- 668
Query: 156 PRRAPRRHLGSR 167
A ++LG R
Sbjct: 669 ---ATHQNLGFR 677
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 35.0 bits (79), Expect = 0.036
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 114 PPPVWRRLTPHLRQPLPTPPPP-APPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
PPP P P P PPPP PP P + L T P PRR SR+L R
Sbjct: 34 PPP------PPPPTPRPPPPPPLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLAR 86
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 35.0 bits (79), Expect = 0.036
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 114 PPPVWRRLTPHLRQPLPTPPPP-APPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
PPP P P P PPPP PP P + L T P PRR SR+L R
Sbjct: 34 PPP------PPPPTPRPPPPPPLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLAR 86
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 35.0 bits (79), Expect = 0.036
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 114 PPPVWRRLTPHLRQPLPTPPPP-APPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
PPP P P P PPPP PP P + L T P PRR SR+L R
Sbjct: 34 PPP------PPPPTPRPPPPPPLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLAR 86
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 35.0 bits (79), Expect = 0.036
Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 77 DLNLQPRRAVGTAELRPRQLPVPHRAL---LAAAEFLRLLPPP-VWRRLTPHLRQ----- 127
D PRR+ + L PR P P R L + LR+ PP V LTP +
Sbjct: 1905 DFPAPPRRSRRPSPLAPR--PPPSRWASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPG 1962
Query: 128 PLPTPPPPAPPRPDFAKVRVLS 149
P P+PPPP PDF + V+S
Sbjct: 1963 PAPSPPPPEDLGPDFEDMEVVS 1984
Score = 32.7 bits (73), Expect = 0.18
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 93 PRQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSST 152
P LP R++L F W LT L P P PPPP P P A +SS
Sbjct: 593 PVPLPEKRRSILREPTFR-------WTSLTRELPPPPPAPPPPPAPSPPPAPA---TSSR 642
Query: 153 HSRPRRAPR 161
RAP+
Sbjct: 643 RPLLLRAPQ 651
Score = 30.8 bits (68), Expect = 0.68
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 105 AAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPP 138
A E +L PPP LTP P P+PPPP PP
Sbjct: 394 AEKEEAKLPPPP----LTP----PAPSPPPPLPP 419
Score = 30.4 bits (67), Expect = 0.89
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 113 LPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPR 161
LPP + P + P PPPP PP VLSS S PR+A R
Sbjct: 2234 LPPGPLLGVLPVVGVVRPAPPPPPPPL-----TLVLSSGPASPPRQAIR 2277
Score = 28.5 bits (62), Expect = 3.4
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 62 ENAVNSRQGPWRLQFDLNLQPRRAVGTAELRPRQLPVPHRALLAAAEFLRLLPPPVWRRL 121
E AV P + + L P A P LP P + + L PPP
Sbjct: 383 ERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPP-----STSPPPPLCPPPP---- 433
Query: 122 TPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRRRPRS 175
P PLP+PPPP + +T SR R P R R R+
Sbjct: 434 PPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARA 487
Score = 26.9 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 119 RRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRP 156
+ L P LR + PPPAP A+++V + S RP
Sbjct: 1839 QNLDPPLRPDSGSAPPPAPRSFSGARIKVPNYSPSRRP 1876
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 35.0 bits (79), Expect = 0.036
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 29/141 (20%)
Query: 6 ILHLHTAPPPSPLPFCVSQPGHAASAVGLHQGANVETKMDRAGIPLLSRTFAGVSSENAV 65
ILH PPP+P P QP H A L Q +++T+ R + L +N V
Sbjct: 182 ILH---PPPPAPPP----QPTHMAP---LGQFVSLQTQHPRMPLQRL---------DNDV 222
Query: 66 NSR-QGPWRLQFDLNLQPRRAVGTAELRPRQLPVP--HRALLAAAEFLRLLPPPVWRRLT 122
+ R P F + + + LP H+ L + ++P RRL+
Sbjct: 223 DLRGDQPSLGSFTYSTSAPGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMP----RRLS 278
Query: 123 PH---LRQPLPTPPPPAPPRP 140
L+QPLP PPPP PP P
Sbjct: 279 TQRYRLQQPLPPPPPPPPPPP 299
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 34.7 bits (78), Expect = 0.047
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 82 PRRAVGTAELRP--RQLPVPHRALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPR 139
PR ++ +P R+ P+P R E R PP +R P P PPPP PP
Sbjct: 54 PREPAPRSDAQPPSREKPLPQR------EVSRAEPPMSLQR-----EPPRPEPPPPFPPL 102
Query: 140 PDFAKVRVLSSSTHSRPRRAPR 161
P S+S +P R PR
Sbjct: 103 PLQPPPPRESASRAEQPPRPPR 124
Score = 27.3 bits (59), Expect = 7.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 127 QPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPR 161
+PLP+P P A P+P + +S+ S+ P+
Sbjct: 1050 KPLPSPKPSASPKPSLSAKPSVSTKLISKSNPTPK 1084
>gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens]
Length = 1215
Score = 34.7 bits (78), Expect = 0.047
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 87 GTAELRPRQLPVPHR-ALLAAAEFLRLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKV 145
G +P+ LPVPH A L+ L P P RL HL P PPP A P ++
Sbjct: 1046 GRTSWQPQSLPVPHHPACLSGLSVPLLQPTPRSVRLC-HLSLRAPLPPPFATPTSCLSQA 1104
Query: 146 RVLSSSTHS 154
LSSST S
Sbjct: 1105 -CLSSSTLS 1112
>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
Length = 669
Score = 34.7 bits (78), Expect = 0.047
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 127 QPLPTPPPPAPPRPDFAKVRVLSSSTHS-RPRRAPRRHLGSRTLRRRP 173
QP P+ P PP+P+F K++ S S P++AP G+ +L+ P
Sbjct: 26 QPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAPLPEFGAVSLKPPP 73
>gi|68163572 hypothetical protein LOC84077 [Homo sapiens]
Length = 904
Score = 34.7 bits (78), Expect = 0.047
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 123 PHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPRRAPRRHLGSRTLRR 171
P L++PLP PPPPAPPRP + + P A + TL R
Sbjct: 89 PTLKKPLP-PPPPAPPRPVLLATTGAAKRSTLSPTMARQVRTHQETLNR 136
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 34.3 bits (77), Expect = 0.061
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPR 157
L PHL L PPPP PP P A++ + H RPR
Sbjct: 277 LGPHL---LGAPPPPPPPPPPLAELAGAPHAHHKRPR 310
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 112 LLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAK 144
LL PP P P PPPP PP P A+
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 34.3 bits (77), Expect = 0.061
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPR 157
L PHL L PPPP PP P A++ + H RPR
Sbjct: 277 LGPHL---LGAPPPPPPPPPPLAELAGAPHAHHKRPR 310
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 112 LLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAK 144
LL PP P P PPPP PP P A+
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 34.3 bits (77), Expect = 0.061
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 121 LTPHLRQPLPTPPPPAPPRPDFAKVRVLSSSTHSRPR 157
L PHL L PPPP PP P A++ + H RPR
Sbjct: 277 LGPHL---LGAPPPPPPPPPPLAELAGAPHAHHKRPR 310
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 112 LLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAK 144
LL PP P P PPPP PP P A+
Sbjct: 677 LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 34.3 bits (77), Expect = 0.061
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 113 LPPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
LPPP + T P P PPPP PP P F
Sbjct: 378 LPPPPLSQPTGGAPPPPPPPPPPGPPPPPF 407
Score = 27.3 bits (59), Expect = 7.5
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 114 PPPVWRRLTPHLRQPLPTPPPPAPPRPDF 142
PPP PH P PPPP PP D+
Sbjct: 348 PPPSPPSFPPHPDFAAPPPPPP-PPAADY 375
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,870,233
Number of Sequences: 37866
Number of extensions: 617040
Number of successful extensions: 10157
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 6596
Number of HSP's gapped (non-prelim): 2697
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.