Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239755304
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo
sapiens]
(209 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo ... 438 e-123
gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo ... 436 e-123
gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo ... 436 e-123
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 53 2e-07
gi|18959210 WIRE protein [Homo sapiens] 51 6e-07
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 50 2e-06
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 49 4e-06
gi|54860079 nadrin isoform 1 [Homo sapiens] 49 4e-06
gi|54860105 nadrin isoform 2 [Homo sapiens] 49 4e-06
gi|118498339 EMI domain containing 2 [Homo sapiens] 48 7e-06
gi|7706501 WW domain binding protein 11 [Homo sapiens] 47 9e-06
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 47 1e-05
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 47 1e-05
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 47 1e-05
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens] 47 1e-05
gi|22027541 programmed cell death 7 [Homo sapiens] 47 2e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 46 2e-05
gi|71043876 undifferentiated embryonic cell transcription factor... 46 3e-05
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 46 3e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 46 3e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 4e-05
gi|11386183 WAS protein family, member 2 [Homo sapiens] 45 4e-05
gi|160707881 formin 2 [Homo sapiens] 45 4e-05
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 45 6e-05
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 45 6e-05
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 44 8e-05
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 44 1e-04
>gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo
sapiens]
Length = 209
Score = 438 bits (1127), Expect = e-123
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL 60
MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL
Sbjct: 1 MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL 60
Query: 61 AAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRL 120
AAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRL
Sbjct: 61 AAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRL 120
Query: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL 180
RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL
Sbjct: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL 180
Query: 181 AAPRASPPQHPNRAAPPASARRLRSPGPS 209
AAPRASPPQHPNRAAPPASARRLRSPGPS
Sbjct: 181 AAPRASPPQHPNRAAPPASARRLRSPGPS 209
>gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo
sapiens]
Length = 209
Score = 436 bits (1122), Expect = e-123
Identities = 208/209 (99%), Positives = 208/209 (99%)
Query: 1 MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL 60
MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL
Sbjct: 1 MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL 60
Query: 61 AAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRL 120
AAPAFGAGLAVGRLRRVGRRGPEKRQPGR PPIDPLGGPALPRLSSPEPPPAGSDRDWRL
Sbjct: 61 AAPAFGAGLAVGRLRRVGRRGPEKRQPGRNPPIDPLGGPALPRLSSPEPPPAGSDRDWRL 120
Query: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL 180
RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL
Sbjct: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL 180
Query: 181 AAPRASPPQHPNRAAPPASARRLRSPGPS 209
AAPRASPPQHPNRAAPPASARRLRSPGPS
Sbjct: 181 AAPRASPPQHPNRAAPPASARRLRSPGPS 209
>gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo
sapiens]
Length = 209
Score = 436 bits (1122), Expect = e-123
Identities = 208/209 (99%), Positives = 208/209 (99%)
Query: 1 MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL 60
MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL
Sbjct: 1 MGSAARARLFSVLADLRVRLSRALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFL 60
Query: 61 AAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRL 120
AAPAFGAGLAVGRLRRVGRRGPEKRQPGR PPIDPLGGPALPRLSSPEPPPAGSDRDWRL
Sbjct: 61 AAPAFGAGLAVGRLRRVGRRGPEKRQPGRNPPIDPLGGPALPRLSSPEPPPAGSDRDWRL 120
Query: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL 180
RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL
Sbjct: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL 180
Query: 181 AAPRASPPQHPNRAAPPASARRLRSPGPS 209
AAPRASPPQHPNRAAPPASARRLRSPGPS
Sbjct: 181 AAPRASPPQHPNRAAPPASARRLRSPGPS 209
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 52.8 bits (125), Expect = 2e-07
Identities = 55/199 (27%), Positives = 71/199 (35%), Gaps = 46/199 (23%)
Query: 27 RAGGEVQTRPPPPSPGRGS--ELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
+ G + Q PPPP +G + G Q PP P G+ + +G K
Sbjct: 186 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP--------------GKPQGPPPQGDNK 231
Query: 85 RQPGRKPPIDPLG----------GPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRR 134
Q R PP P G GP P PPP G ++ +G
Sbjct: 232 SQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP----------QGPPPPG 281
Query: 135 FPLTPPPSGSWACRVSAMGEGCARCLRLPPR-----RGPPRPPGLPY---PGGLAAPRAS 186
P PPP G R S G + PP+ +GPP PPG P P G P+
Sbjct: 282 KPQGPPPQGGSKSRSSRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 339
Query: 187 PPQHPNRAAPPASARRLRS 205
PP + PP + RS
Sbjct: 340 PPPGKPQGPPPQGGSKSRS 358
Score = 48.5 bits (114), Expect = 4e-06
Identities = 52/207 (25%), Positives = 69/207 (33%), Gaps = 62/207 (29%)
Query: 27 RAGGEVQTRPPPPSPGRGS--ELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
+ G + Q PPPP +G + G Q PP P G+ + +G K
Sbjct: 124 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP--------------GKPQGPPPQGDNK 169
Query: 85 RQPGRKPPIDPLG----------GPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRR 134
+ R PP P G GP P PPP G ++
Sbjct: 170 SRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK------------------ 211
Query: 135 FPLTPPPSGSWACRVSAMGEGCARCLRLPPRR-------------GPPRPPGLPY---PG 178
P PPP G G+ ++ R PP + GPP PPG P P
Sbjct: 212 -PQGPPPPGK-PQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 269
Query: 179 GLAAPRASPPQHPNRAAPPASARRLRS 205
G P+ PP + PP + RS
Sbjct: 270 GGNKPQGPPPPGKPQGPPPQGGSKSRS 296
Score = 47.4 bits (111), Expect = 9e-06
Identities = 57/204 (27%), Positives = 70/204 (34%), Gaps = 60/204 (29%)
Query: 27 RAGGEVQTRPPPPSPGRGS--ELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
+ G + Q PPPP +G + G Q PP P G+ + +G K
Sbjct: 248 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP--------------GKPQGPPPQGGSK 293
Query: 85 RQPGRKPPIDPLG----------GPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRR 134
+ R PP P G GP P PPP G ++
Sbjct: 294 SRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK------------------ 335
Query: 135 FPLTPPPSGSWACRVSAMGEGCARCLRLPPRR--GPPR-----PPGLPYPGG-----LAA 182
P PPP G G +R R PP + GPP+ P G P P G A
Sbjct: 336 -PQGPPPPGK-PQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQA 393
Query: 183 PRASPPQHPNRAAPPASARRLRSP 206
P A PQ P R PP R R P
Sbjct: 394 PPAGQPQGPPR--PPQGGRPSRPP 415
Score = 43.9 bits (102), Expect = 1e-04
Identities = 49/194 (25%), Positives = 65/194 (33%), Gaps = 51/194 (26%)
Query: 27 RAGGEVQTRPPPPSPGRGS--ELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
+ G + Q PPPP +G + G Q PP P G+ + +G +
Sbjct: 63 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP--------------GKPQGPPPQGDKS 108
Query: 85 RQPGRKPPIDPLG----------GPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRR 134
R P R PP P G GP P PPP G ++
Sbjct: 109 RSP-RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK------------------ 149
Query: 135 FPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRA 194
P PPP G G+ +R R PP + P G P GG PP +
Sbjct: 150 -PQGPPPPGK-PQGPPPQGDNKSRSSRSPPGK----PQGPPPQGGNQPQGPPPPPGKPQG 203
Query: 195 APPASARRLRSPGP 208
PP + + P P
Sbjct: 204 PPPQGGNKPQGPPP 217
Score = 33.1 bits (74), Expect = 0.17
Identities = 36/150 (24%), Positives = 46/150 (30%), Gaps = 35/150 (23%)
Query: 69 LAVGRLRRVGRRGPEKRQPGRKPPIDPLG----------GPALPRLSSPEPPPAGSDRDW 118
L G + +G K Q PP P G GP P PPP G ++
Sbjct: 31 LIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP- 89
Query: 119 RLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPG 178
+G P PPP G + PR P +P G P G
Sbjct: 90 ---------QGPPPPGKPQGPPPQGDKS---------------RSPRSPPGKPQGPPPQG 125
Query: 179 GLAAPRASPPQHPNRAAPPASARRLRSPGP 208
G PP + PP + + P P
Sbjct: 126 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 155
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 51.2 bits (121), Expect = 6e-07
Identities = 56/192 (29%), Positives = 74/192 (38%), Gaps = 36/192 (18%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFL---AAPAFGAGLAV----GRLRRVGRRGPEKRQPG 88
PPPP PGR A PP P + APA+ + G+ GR GP P
Sbjct: 177 PPPPPPGR------RANAPPTPLPMHSSKAPAYNREKPLPPTPGQRLHPGREGPPAPPPV 230
Query: 89 RKPP--IDPLGGPALPRLSSPEPP----------PAGSDRDWRLRLCLREGEGVLWRRFP 136
+ PP ++ GP+ L+ P PP P+ + L R L R+ P
Sbjct: 231 KPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNS--LHRKTP 288
Query: 137 -----LTPPPSGSWACRVSAMGEGCARCLRLPPRRG--PPRPPGLPYPGGLAAPRASPPQ 189
L PPP S S + R PP RG PP PP + G AP PP
Sbjct: 289 GPVRGLAPPPPTS--ASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPPPPPY 346
Query: 190 HPNRAAPPASAR 201
+ + PP+ +
Sbjct: 347 RMHGSEPPSRGK 358
Score = 33.1 bits (74), Expect = 0.17
Identities = 49/178 (27%), Positives = 58/178 (32%), Gaps = 47/178 (26%)
Query: 37 PPPSPGRGSELGASAQR--PPGPAFLAAPAFGAGLAVGRLRRVGRRGPE---------KR 85
PPPSP G S Q PP P + P G+ G PE ++
Sbjct: 232 PPPSPVN-IRTGPSGQSLAPPPPPYRQPP----GVPNGPSSPTNESAPELPQRHNSLHRK 286
Query: 86 QPGRKPPIDPLGGP----ALPRLSSPEPPPAGSDRDWRLRL------CLREGEGVLWRRF 135
PG P+ L P A P L S PPP D R +R G R
Sbjct: 287 TPG---PVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGA----RDA 339
Query: 136 PLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNR 193
P PPP PP RG P PP P G P P ++ +R
Sbjct: 340 PPPPPPYRMHGSE--------------PPSRGKPPPPPSRTPAGPPPPPPPPLRNGHR 383
Score = 29.6 bits (65), Expect = 1.9
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 23 ALQRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGP 82
+L R+ G V+ PPP L + RPP PA P+ GA A V R G
Sbjct: 282 SLHRKTPGPVRGLAPPPPTSASPSL--LSNRPPPPA-RDPPSRGA--APPPPPPVIRNGA 336
Query: 83 EKRQPGRKPPIDPLGGPALPRLSSPEPPPA 112
P PP + G P P PPP+
Sbjct: 337 RDAPP--PPPPYRMHGSEPPSRGKPPPPPS 364
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 49.7 bits (117), Expect = 2e-06
Identities = 58/195 (29%), Positives = 74/195 (37%), Gaps = 54/195 (27%)
Query: 27 RAGGEVQTRPPPPSPGRGS--ELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
+ G + Q PPPP +G + G Q PP P G+ + +G +
Sbjct: 42 QGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPP--------------GKPQGPPPQGDKS 87
Query: 85 RQPGRKPPIDPLGGPALPRLSSPE-PPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSG 143
R P R PP P G P P+ P+ PPP G ++ P PPP G
Sbjct: 88 RSP-RSPPGKPQGPP--PQGGKPQGPPPQGGNK-------------------PQGPPPPG 125
Query: 144 SWACRVSAMGEGCARCLRLPPRR--GPPR-----PPGLPYPGG-----LAAPRASPPQHP 191
A G ++ R PP + GPP+ P G P P G AP A PQ P
Sbjct: 126 K-PQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 184
Query: 192 NRAAPPASARRLRSP 206
R PP R R P
Sbjct: 185 PR--PPQGGRPSRPP 197
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 163 PPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPGP 208
PP +G +P G P PG P+ PPQ +P + + + P P
Sbjct: 60 PPPQGGNKPQGPPPPG---KPQGPPPQGDKSRSPRSPPGKPQGPPP 102
Score = 27.3 bits (59), Expect = 9.5
Identities = 39/158 (24%), Positives = 50/158 (31%), Gaps = 42/158 (26%)
Query: 69 LAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPAL--------PRLSSPEPPPAGSDRDWRL 120
L G + +G K Q PP P G P P P+ PP D+
Sbjct: 31 LIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSP 90
Query: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGL 180
R + +G PPP G +G PP +G +P G P PG
Sbjct: 91 RSPPGKPQG---------PPPQGG-------KPQG-------PPPQGGNKPQGPPPPGKP 127
Query: 181 AAPRA----------SPPQHPNRAAPPASARRLRSPGP 208
P A SPP P + P + P P
Sbjct: 128 QGPPAQGGSKSQSARSPPGKP-QGPPQQEGNNPQGPPP 164
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 48.5 bits (114), Expect = 4e-06
Identities = 56/190 (29%), Positives = 66/190 (34%), Gaps = 30/190 (15%)
Query: 25 QRRAGGEVQTRPPPPSPGRGSELGASAQRPPGPAF---LAAPAFGAGLAVGRLRRVGRR- 80
Q G V PPPP P + + A+ Q+ +F +A P G LA+G R V R
Sbjct: 704 QAELGQRVGLFPPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGP-LALGSPRLVRRPP 762
Query: 81 ---GPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPL 137
P PG PP P G PA PR +P P G L G + RR
Sbjct: 763 PGPAPAAASPGPPPPASPPGAPASPR--APRTSPYGG-----LPAAPLAGPALPARRLSR 815
Query: 138 TPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPP 197
P A LP G P P P + PR P AAP
Sbjct: 816 ASRPLS-------------ASQPSLP--HGAPGPAASTRPASSSTPRLGPTPAARAAAPS 860
Query: 198 ASARRLRSPG 207
R SPG
Sbjct: 861 PDRRDSASPG 870
Score = 35.8 bits (81), Expect = 0.027
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 163 PPRRGPPRPPGLPYPGGLAAPRASPPQHPNR--AAPPASA 200
P ++ PP PP P PG P +PPQHP R A PP +A
Sbjct: 31 PQQQPPPPPPPAPPPG----PGPAPPQHPPRAEALPPEAA 66
Score = 30.8 bits (68), Expect = 0.86
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 135 FPLTPPP----SGSWACRVSAMGEGC---ARCLRLPPRRGPPRPPGLPYPGGLAAPRASP 187
FP PPP S + +A C AR L P G PR P PG AP A+
Sbjct: 714 FPPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGPLALGSPRLVRRPPPG--PAPAAAS 771
Query: 188 PQHPNRAAPPASARRLRSPGPS 209
P P A+PP + R+P S
Sbjct: 772 PGPPPPASPPGAPASPRAPRTS 793
Score = 29.3 bits (64), Expect = 2.5
Identities = 45/172 (26%), Positives = 53/172 (30%), Gaps = 59/172 (34%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDP 95
PPPP+P + Q+PP P A P PG PP P
Sbjct: 25 PPPPAPPQ--------QQPPPPPPPAPPP---------------------GPGPAPPQHP 55
Query: 96 LGGPALPRLSSPEPPPAGSDRDWRLRLCLREG------------EGVLWRRFPLTPP--- 140
ALP ++ E P G R R C R G G R P P
Sbjct: 56 PRAEALPPEAADEGGPRGRLRS-RDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGP 114
Query: 141 ------PSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRAS 186
P S++CR +A G P GP G G PR S
Sbjct: 115 EGPARGPKVSFSCRGAASGPA--------PGPGPAEEAGSEEAGPAGEPRGS 158
Score = 27.3 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 167 GPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPGPS 209
G PG P P A P+ PP P A PP PGP+
Sbjct: 15 GATPAPGPPPPPPPAPPQQQPPPPPPPAPPP-------GPGPA 50
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 48.5 bits (114), Expect = 4e-06
Identities = 55/197 (27%), Positives = 70/197 (35%), Gaps = 35/197 (17%)
Query: 39 PSPGRGSELGASAQRPPGPAF------LAAPAFGAGLAVGRLRR-VGRRGPEKRQPGRKP 91
P+PGR + AS Q P A + P AG + LRR V + P +PG P
Sbjct: 588 PAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRRAVKKPAPAPPKPGNPP 647
Query: 92 PIDPLGG---------PAL---PRLSSPEPP-------PAGSDRDWRLRLCLREGEGVLW 132
P P G P+L P SP PP P +L R +
Sbjct: 648 PGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSP 707
Query: 133 RRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPN 192
+ P PPP + P +GPP P LP GL P +PPQ P
Sbjct: 708 IQAPNHPPPQPPT--------QATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPT 759
Query: 193 -RAAPPASARRLRSPGP 208
+ PP + P P
Sbjct: 760 PPSTPPLGKQNPSLPAP 776
Score = 30.8 bits (68), Expect = 0.86
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 38/152 (25%)
Query: 75 RRVGRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRR 134
RR G + P +PP+ P G + + PEPPP S R G G
Sbjct: 509 RRGGTLNRKHISPAFQPPLPPTDGSTVVP-AGPEPPPQSS------RAESSSGGG----- 556
Query: 135 FPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPG--------GLAAPRAS 186
T P S + + G+G PP+ P +P PG G P+A+
Sbjct: 557 ---TVPSSAGILEQGPSPGDGS------PPKPKDPVSAAVPAPGRNNSQIASGQNQPQAA 607
Query: 187 PPQH------PNRAAPPAS---ARRLRSPGPS 209
H P+ AA P+ R ++ P P+
Sbjct: 608 AGSHQLSMGQPHNAAGPSPHTLRRAVKKPAPA 639
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 48.5 bits (114), Expect = 4e-06
Identities = 55/197 (27%), Positives = 70/197 (35%), Gaps = 35/197 (17%)
Query: 39 PSPGRGSELGASAQRPPGPAF------LAAPAFGAGLAVGRLRR-VGRRGPEKRQPGRKP 91
P+PGR + AS Q P A + P AG + LRR V + P +PG P
Sbjct: 510 PAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRRAVKKPAPAPPKPGNPP 569
Query: 92 PIDPLGG---------PAL---PRLSSPEPP-------PAGSDRDWRLRLCLREGEGVLW 132
P P G P+L P SP PP P +L R +
Sbjct: 570 PGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSP 629
Query: 133 RRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPN 192
+ P PPP + P +GPP P LP GL P +PPQ P
Sbjct: 630 IQAPNHPPPQPPT--------QATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPT 681
Query: 193 -RAAPPASARRLRSPGP 208
+ PP + P P
Sbjct: 682 PPSTPPLGKQNPSLPAP 698
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 47.8 bits (112), Expect = 7e-06
Identities = 54/166 (32%), Positives = 67/166 (40%), Gaps = 34/166 (20%)
Query: 28 AGGEVQTRPPPPS--PGRGSELGASAQR-PPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
AG QT PP P+ PG + G + ++ P GP L P GL G + R G GP
Sbjct: 199 AGPPGQTGPPGPAGPPGSKGDRGQTGEKGPAGPPGLLGPPGPRGLP-GEMGRPGPPGP-- 255
Query: 85 RQPGRKPPIDPLGGPALPR--LSSPEPPPAGSDRDWRLRLCLREG--EGVLWRRFPLTPP 140
PG P +P P P+ L S +PP + D RL + + GV R P PP
Sbjct: 256 --PG--PAGNPGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVLAGVPGPRGPPGPP 311
Query: 141 PSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRAS 186
P RGPP PPG P GLA R +
Sbjct: 312 GP--------------------PGPRGPPGPPGTPGSQGLAGERGT 337
Score = 31.2 bits (69), Expect = 0.66
Identities = 30/103 (29%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
Query: 87 PGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWA 146
P ++ P P G P P PP GS D G + P PP
Sbjct: 190 PRQRRPTGPAGPPGQTGPPGPAGPP-GSKGD----------RGQTGEKGPAGPP------ 232
Query: 147 CRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQ 189
+G R LP G P PPG P P G P + PQ
Sbjct: 233 ---GLLGPPGPR--GLPGEMGRPGPPGPPGPAGNPGPSPNSPQ 270
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 47.4 bits (111), Expect = 9e-06
Identities = 53/174 (30%), Positives = 55/174 (31%), Gaps = 48/174 (27%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDP 95
PP P P A RPPGP P G A LR G G P PP P
Sbjct: 405 PPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPG-APPFLRPPGMPGLRGPLPRLLPPGPP 463
Query: 96 LGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEG 155
G P P P PPP P PPP G
Sbjct: 464 PGRPPGP---PPGPPPG----------------------LPPGPPPRGP----------- 487
Query: 156 CARCLRLPPRRGPPRPPGLPYP-GGLAAPRASPPQHPNRAAPPASARRLRSPGP 208
PPR PP PPG+P P G+ P PP P APP P P
Sbjct: 488 -------PPRLPPPAPPGIPPPRPGMMRPPLVPPLGP---APPGLFPPAPLPNP 531
Score = 38.5 bits (88), Expect = 0.004
Identities = 41/128 (32%), Positives = 42/128 (32%), Gaps = 31/128 (24%)
Query: 82 PEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPP 141
P + Q P PLG P P L P PP P PPP
Sbjct: 399 PSQIQAPPMPGPPPLGPPPAPPLRPPGPPTG----------------------LPPGPPP 436
Query: 142 SGSWACRVSAMGEGCARCLRL-PPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASA 200
R M RL PP P RPPG P PG P PP P R PP
Sbjct: 437 GAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPG-PPPG---PPPGLPPGPPPRGPPP--- 489
Query: 201 RRLRSPGP 208
RL P P
Sbjct: 490 -RLPPPAP 496
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 47.0 bits (110), Expect = 1e-05
Identities = 47/173 (27%), Positives = 65/173 (37%), Gaps = 16/173 (9%)
Query: 36 PPPPSPGRGSELG--ASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPI 93
PPPP PG ++ AS+ +PPG + A P G + + R E I
Sbjct: 193 PPPPKPGSPTQRAREASSWKPPGHSHTAPPGRGTQRPLTQ-RHSSESSSELSSSAWPGTI 251
Query: 94 DPLGGPALPRLSSPEPPPAGSDRDWRLR----LCLREGEGVLWRRFPLTPPPSGSWACRV 149
RL +P PP + W L C+ EG + R + P +W+
Sbjct: 252 WTSTLSPGQRLPTPPPPDPAALTSWGLPQQQGACVPEGIALALRCRAMGPWEEQNWSATS 311
Query: 150 SAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARR 202
+ G G P R P PP LPYP A P+R +S+RR
Sbjct: 312 GSPGPG-------PHPRSRPTPPRLPYPRRAAGTVGI--GRPSRGPGGSSSRR 355
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 47.0 bits (110), Expect = 1e-05
Identities = 49/171 (28%), Positives = 58/171 (33%), Gaps = 39/171 (22%)
Query: 38 PPSPGRGSELGASAQR-PPGPAFLAAPAFGAGLAVGRLRRVGRRG-----PEKRQPGRKP 91
P PGR E G PPGP L P G G+ +G +G G E+ PG +
Sbjct: 321 PGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQG 380
Query: 92 PIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSA 151
P G P + P PP +R + EG PP +S
Sbjct: 381 PPGLPGPPGAAVMGPPGPPGFPGERG------QKGDEG----------PPG------ISI 418
Query: 152 MGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQ---HPNRAAPPAS 199
G P G P PGLP P G A P P P PP S
Sbjct: 419 PGP--------PGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461
Score = 42.0 bits (97), Expect = 4e-04
Identities = 53/163 (32%), Positives = 61/163 (37%), Gaps = 24/163 (14%)
Query: 37 PPPSPG---RGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPI 93
PP SPG G + Q PPG L P GL G +G EK PG+
Sbjct: 1239 PPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNG----GIKG-EKGNPGQP--- 1290
Query: 94 DPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMG 153
G P LP L + PP R L +G+ L P P G SA
Sbjct: 1291 ---GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGL-PGVPGFPGMKGPSGVPGSAGP 1346
Query: 154 EGCARCLRLPPRRGPPRPPGLPYPGG---LAAPRASPPQHPNR 193
EG P GPP PPGLP P G + A PP P +
Sbjct: 1347 EG------EPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQ 1383
Score = 40.4 bits (93), Expect = 0.001
Identities = 50/169 (29%), Positives = 65/169 (38%), Gaps = 33/169 (19%)
Query: 38 PPSPGRGSELGA----SAQRPPGPAFLAAPAFGAGLA-----VGRLRRVGRRGP--EKRQ 86
P +PG + G PPGP ++ P GL VG G+ GP EK +
Sbjct: 1109 PGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGK 1168
Query: 87 PGRKP---PIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSG 143
PG+ P G P P +P PP L ++G+G L P P G
Sbjct: 1169 PGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG-------LSGQKGDGGL----PGIPGNPG 1217
Query: 144 SWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASP-PQHP 191
+ G P +GPP PPG P P L P+ +P PQ P
Sbjct: 1218 LPGPKGEPGFHG------FPGVQGPPGPPGSPGP-ALEGPKGNPGPQGP 1259
Score = 38.1 bits (87), Expect = 0.005
Identities = 50/177 (28%), Positives = 56/177 (31%), Gaps = 52/177 (29%)
Query: 37 PPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAV-GRLRRVGRRGPEKRQ-----PGRK 90
PP PG E G + PPGP L P F L G G GP R PG K
Sbjct: 741 PPGFPGPKGEPGFALPGPPGPPGL--PGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPK 798
Query: 91 PPIDP------LGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGS 144
+ P +G P LP + PP P P P G
Sbjct: 799 GDVGPNGQPGPMGPPGLPGIGVQGPPGP-----------------------PGIPGPIGQ 835
Query: 145 WACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASP--PQHPNRAAPPAS 199
+P +G P PPGL PG R SP P P PP S
Sbjct: 836 PGLH------------GIPGEKGDPGPPGLDVPGP-PGERGSPGIPGAPGPIGPPGS 879
Score = 32.3 bits (72), Expect = 0.30
Identities = 47/152 (30%), Positives = 55/152 (36%), Gaps = 16/152 (10%)
Query: 38 PPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAV-----GRLRRVGRRGPEKRQ--PGRK 90
P SPG Q PPGP + G + G G GP Q PG
Sbjct: 134 PGSPGF-----PGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPT 188
Query: 91 PPIDPLGGPALPRLSSPEPPPA--GSDRDWRLRLCLREGE-GVLWRRFPLTPPPSGSWAC 147
P+G P P L P PP G + L +GE G + P PP S
Sbjct: 189 GIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQK 248
Query: 148 RVSAMGEGCARCLRLPPRRGPPRPPGLPYPGG 179
R + E LP RGPP PPG+ P G
Sbjct: 249 RPIDV-EFQKGDQGLPGDRGPPGPPGIRGPPG 279
Score = 30.8 bits (68), Expect = 0.86
Identities = 54/182 (29%), Positives = 61/182 (33%), Gaps = 29/182 (15%)
Query: 38 PPSPGRGSELGASAQRPPGP-AFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPL 96
P S G G PPGP F P G A G R+G GP PG PP P
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIP--GPPGAPGTPGRIGLEGP----PG--PPGFP- 745
Query: 97 GGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGC 156
G P + P PP ++ L + G FP P P G +G
Sbjct: 746 GPKGEPGFALPGPPGPPGLPGFKGALGPKGDRG-----FPGPPGPPGRTGLDGLPGPKGD 800
Query: 157 ARCLRLPPRRGPPRPPGL--------PYPGGLAAPRASPPQH--PNRAAPPASARRLRSP 206
P GP PPGL P P G+ P P H P P L P
Sbjct: 801 VGPNGQP---GPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPP-GLDVP 856
Query: 207 GP 208
GP
Sbjct: 857 GP 858
Score = 29.6 bits (65), Expect = 1.9
Identities = 36/119 (30%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 97 GGPALPRLSSPEPPPA--GSDRDWRL-----RLCLREGEGVLWRRFPLTPPPSGSWACRV 149
G P LP PE PP G D + +R G+ FP TP G
Sbjct: 57 GHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGL--PGFPGTPGLPGMPGHDG 114
Query: 150 SAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPGP 208
+ +G C RG P PG P GL P PP P P S PGP
Sbjct: 115 APGPQGIPGCNGTKGERGFPGSPGFP---GLQGP-PGPPGIPGMKGEPGSIIMSSLPGP 169
Score = 29.6 bits (65), Expect = 1.9
Identities = 47/182 (25%), Positives = 55/182 (30%), Gaps = 41/182 (22%)
Query: 38 PPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPE--KRQPGRKPPIDP 95
P PG + G + +P P P GR VG G QPG
Sbjct: 646 PGIPGPKGDPGQTITQPGKPGLPGNP--------GRDGDVGLPGDPGLPGQPGLPGIPGS 697
Query: 96 LGGPALPRLSSPEPP-PAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGE 154
G P +P + P PP P G FP P P G+ E
Sbjct: 698 KGEPGIPGIGLPGPPGPKG---------------------FPGIPGPPGAPGTPGRIGLE 736
Query: 155 GCARCLRLPPRRG--------PPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSP 206
G P +G PP PPGLP G P+ P PP P
Sbjct: 737 GPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGD-RGFPGPPGPPGRTGLDGLP 795
Query: 207 GP 208
GP
Sbjct: 796 GP 797
Score = 29.3 bits (64), Expect = 2.5
Identities = 43/167 (25%), Positives = 51/167 (30%), Gaps = 37/167 (22%)
Query: 38 PPSPGRGSELGASAQRPPGPAFLAAPAFGAGLA-----VGRLRRVGRRGPEKRQP--GRK 90
PP P RG + PPGP + P G G G GP+ G K
Sbjct: 70 PPGP-RGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTK 128
Query: 91 PPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVS 150
G P P L P PP + E ++ P P G+
Sbjct: 129 GERGFPGSPGFPGLQGPPGPPG-------IPGMKGEPGSIIMSSLP---GPKGN------ 172
Query: 151 AMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPP 197
P GPP GLP P G+ P PP P PP
Sbjct: 173 ------------PGYPGPPGIQGLPGPTGIPGP-IGPPGPPGLMGPP 206
Score = 28.9 bits (63), Expect = 3.3
Identities = 47/164 (28%), Positives = 55/164 (33%), Gaps = 34/164 (20%)
Query: 37 PPPSPGRGSELGASA----------QRPPGPAF-LAAPAFGAGLAVGRLRRVGRRGPE-- 83
PP SPG + GAS PPGP L P GR G +G +
Sbjct: 876 PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIP--------GRSGVPGLKGDDGL 927
Query: 84 KRQPGRKPPIDPLGGPALPRLSSP----EPPPAGSDRDWRLRLCLREGEGVLWRRFPLTP 139
+ QPG P G P L P +P GS + +GE L P
Sbjct: 928 QGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE--------KGEPGL-PGIPGVS 978
Query: 140 PPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAP 183
P G G + LP GP PGLP GL P
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGP 1022
Score = 28.1 bits (61), Expect = 5.6
Identities = 53/195 (27%), Positives = 61/195 (31%), Gaps = 38/195 (19%)
Query: 36 PPPPS----PGRGSELG-ASAQRPPG-PAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGR 89
P PP PG+ E G A A P G P AP A G G G PG
Sbjct: 502 PGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPG-----APGFPGSKGEPGDILTFPGM 556
Query: 90 KPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWR--RFPLTPPPSGSWAC 147
K LG P P L P G D L E G+ ++ R P P
Sbjct: 557 KGDKGELGSPGAPGLPGLPGTP-GQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPG 615
Query: 148 RVSAMGEGCARCLRLPPRRGPPRP---------------PGLPYPGGLAAPRASPPQHPN 192
+ MG PP GPP P PG+P P G + P P
Sbjct: 616 NIGPMG---------PPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPG 666
Query: 193 RAAPPASARRLRSPG 207
P + PG
Sbjct: 667 LPGNPGRDGDVGLPG 681
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 47.0 bits (110), Expect = 1e-05
Identities = 49/171 (28%), Positives = 58/171 (33%), Gaps = 39/171 (22%)
Query: 38 PPSPGRGSELGASAQR-PPGPAFLAAPAFGAGLAVGRLRRVGRRG-----PEKRQPGRKP 91
P PGR E G PPGP L P G G+ +G +G G E+ PG +
Sbjct: 321 PGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQG 380
Query: 92 PIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSA 151
P G P + P PP +R + EG PP +S
Sbjct: 381 PPGLPGPPGAAVMGPPGPPGFPGERG------QKGDEG----------PPG------ISI 418
Query: 152 MGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQ---HPNRAAPPAS 199
G P G P PGLP P G A P P P PP S
Sbjct: 419 PGP--------PGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461
Score = 41.2 bits (95), Expect = 6e-04
Identities = 54/164 (32%), Positives = 62/164 (37%), Gaps = 23/164 (14%)
Query: 37 PPPSPG---RGSELGASAQRPPG-PAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPP 92
PP SPG G + Q PPG P F P G G G +G EK PG+
Sbjct: 1239 PPGSPGPALEGPKGNPGPQGPPGRPGFQGLP--GPEGPPGLPGNGGIKG-EKGNPGQP-- 1293
Query: 93 IDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAM 152
G P LP L + PP R L +G+ L P P G SA
Sbjct: 1294 ----GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGL-PGVPGFPGMKGPSGVPGSAG 1348
Query: 153 GEGCARCLRLPPRRGPPRPPGLPYPGG---LAAPRASPPQHPNR 193
EG P GPP PPGLP P G + A PP P +
Sbjct: 1349 PEG------EPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQ 1386
Score = 40.4 bits (93), Expect = 0.001
Identities = 50/169 (29%), Positives = 65/169 (38%), Gaps = 33/169 (19%)
Query: 38 PPSPGRGSELGA----SAQRPPGPAFLAAPAFGAGLA-----VGRLRRVGRRGP--EKRQ 86
P +PG + G PPGP ++ P GL VG G+ GP EK +
Sbjct: 1109 PGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGK 1168
Query: 87 PGRKP---PIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSG 143
PG+ P G P P +P PP L ++G+G L P P G
Sbjct: 1169 PGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG-------LSGQKGDGGL----PGIPGNPG 1217
Query: 144 SWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASP-PQHP 191
+ G P +GPP PPG P P L P+ +P PQ P
Sbjct: 1218 LPGPKGEPGFHG------FPGVQGPPGPPGSPGP-ALEGPKGNPGPQGP 1259
Score = 38.1 bits (87), Expect = 0.005
Identities = 50/177 (28%), Positives = 56/177 (31%), Gaps = 52/177 (29%)
Query: 37 PPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAV-GRLRRVGRRGPEKRQ-----PGRK 90
PP PG E G + PPGP L P F L G G GP R PG K
Sbjct: 741 PPGFPGPKGEPGFALPGPPGPPGL--PGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPK 798
Query: 91 PPIDP------LGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGS 144
+ P +G P LP + PP P P P G
Sbjct: 799 GDVGPNGQPGPMGPPGLPGIGVQGPPGP-----------------------PGIPGPIGQ 835
Query: 145 WACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASP--PQHPNRAAPPAS 199
+P +G P PPGL PG R SP P P PP S
Sbjct: 836 PGLH------------GIPGEKGDPGPPGLDVPGP-PGERGSPGIPGAPGPIGPPGS 879
Score = 32.3 bits (72), Expect = 0.30
Identities = 47/152 (30%), Positives = 55/152 (36%), Gaps = 16/152 (10%)
Query: 38 PPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAV-----GRLRRVGRRGPEKRQ--PGRK 90
P SPG Q PPGP + G + G G GP Q PG
Sbjct: 134 PGSPGF-----PGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPT 188
Query: 91 PPIDPLGGPALPRLSSPEPPPA--GSDRDWRLRLCLREGE-GVLWRRFPLTPPPSGSWAC 147
P+G P P L P PP G + L +GE G + P PP S
Sbjct: 189 GIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQK 248
Query: 148 RVSAMGEGCARCLRLPPRRGPPRPPGLPYPGG 179
R + E LP RGPP PPG+ P G
Sbjct: 249 RPIDV-EFQKGDQGLPGDRGPPGPPGIRGPPG 279
Score = 30.8 bits (68), Expect = 0.86
Identities = 54/182 (29%), Positives = 61/182 (33%), Gaps = 29/182 (15%)
Query: 38 PPSPGRGSELGASAQRPPGP-AFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPL 96
P S G G PPGP F P G A G R+G GP PG PP P
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIP--GPPGAPGTPGRIGLEGP----PG--PPGFP- 745
Query: 97 GGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGC 156
G P + P PP ++ L + G FP P P G +G
Sbjct: 746 GPKGEPGFALPGPPGPPGLPGFKGALGPKGDRG-----FPGPPGPPGRTGLDGLPGPKGD 800
Query: 157 ARCLRLPPRRGPPRPPGL--------PYPGGLAAPRASPPQH--PNRAAPPASARRLRSP 206
P GP PPGL P P G+ P P H P P L P
Sbjct: 801 VGPNGQP---GPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPP-GLDVP 856
Query: 207 GP 208
GP
Sbjct: 857 GP 858
Score = 29.6 bits (65), Expect = 1.9
Identities = 36/119 (30%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 97 GGPALPRLSSPEPPPA--GSDRDWRL-----RLCLREGEGVLWRRFPLTPPPSGSWACRV 149
G P LP PE PP G D + +R G+ FP TP G
Sbjct: 57 GHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGL--PGFPGTPGLPGMPGHDG 114
Query: 150 SAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPGP 208
+ +G C RG P PG P GL P PP P P S PGP
Sbjct: 115 APGPQGIPGCNGTKGERGFPGSPGFP---GLQGP-PGPPGIPGMKGEPGSIIMSSLPGP 169
Score = 29.6 bits (65), Expect = 1.9
Identities = 47/182 (25%), Positives = 55/182 (30%), Gaps = 41/182 (22%)
Query: 38 PPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPE--KRQPGRKPPIDP 95
P PG + G + +P P P GR VG G QPG
Sbjct: 646 PGIPGPKGDPGQTITQPGKPGLPGNP--------GRDGDVGLPGDPGLPGQPGLPGIPGS 697
Query: 96 LGGPALPRLSSPEPP-PAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGE 154
G P +P + P PP P G FP P P G+ E
Sbjct: 698 KGEPGIPGIGLPGPPGPKG---------------------FPGIPGPPGAPGTPGRIGLE 736
Query: 155 GCARCLRLPPRRG--------PPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSP 206
G P +G PP PPGLP G P+ P PP P
Sbjct: 737 GPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGD-RGFPGPPGPPGRTGLDGLP 795
Query: 207 GP 208
GP
Sbjct: 796 GP 797
Score = 29.3 bits (64), Expect = 2.5
Identities = 43/167 (25%), Positives = 51/167 (30%), Gaps = 37/167 (22%)
Query: 38 PPSPGRGSELGASAQRPPGPAFLAAPAFGAGLA-----VGRLRRVGRRGPEKRQP--GRK 90
PP P RG + PPGP + P G G G GP+ G K
Sbjct: 70 PPGP-RGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTK 128
Query: 91 PPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVS 150
G P P L P PP + E ++ P P G+
Sbjct: 129 GERGFPGSPGFPGLQGPPGPPG-------IPGMKGEPGSIIMSSLP---GPKGN------ 172
Query: 151 AMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPP 197
P GPP GLP P G+ P PP P PP
Sbjct: 173 ------------PGYPGPPGIQGLPGPTGIPGP-IGPPGPPGLMGPP 206
Score = 28.9 bits (63), Expect = 3.3
Identities = 47/164 (28%), Positives = 55/164 (33%), Gaps = 34/164 (20%)
Query: 37 PPPSPGRGSELGASA----------QRPPGPAF-LAAPAFGAGLAVGRLRRVGRRGPE-- 83
PP SPG + GAS PPGP L P GR G +G +
Sbjct: 876 PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIP--------GRSGVPGLKGDDGL 927
Query: 84 KRQPGRKPPIDPLGGPALPRLSSP----EPPPAGSDRDWRLRLCLREGEGVLWRRFPLTP 139
+ QPG P G P L P +P GS + +GE L P
Sbjct: 928 QGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE--------KGEPGL-PGIPGVS 978
Query: 140 PPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAP 183
P G G + LP GP PGLP GL P
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGP 1022
Score = 28.1 bits (61), Expect = 5.6
Identities = 53/195 (27%), Positives = 61/195 (31%), Gaps = 38/195 (19%)
Query: 36 PPPPS----PGRGSELG-ASAQRPPG-PAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGR 89
P PP PG+ E G A A P G P AP A G G G PG
Sbjct: 502 PGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPG-----APGFPGSKGEPGDILTFPGM 556
Query: 90 KPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWR--RFPLTPPPSGSWAC 147
K LG P P L P G D L E G+ ++ R P P
Sbjct: 557 KGDKGELGSPGAPGLPGLPGTP-GQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPG 615
Query: 148 RVSAMGEGCARCLRLPPRRGPPRP---------------PGLPYPGGLAAPRASPPQHPN 192
+ MG PP GPP P PG+P P G + P P
Sbjct: 616 NIGPMG---------PPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPG 666
Query: 193 RAAPPASARRLRSPG 207
P + PG
Sbjct: 667 LPGNPGRDGDVGLPG 681
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 47.0 bits (110), Expect = 1e-05
Identities = 53/182 (29%), Positives = 64/182 (35%), Gaps = 44/182 (24%)
Query: 29 GGEVQTRPPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPG 88
G + T P PP P A PPGP PA AGL G + +GP
Sbjct: 813 GSSMLTVPGPPGP-------PGAMGPPGPPGAPGPAGPAGLP-GHQEVLNLQGPPGPPGP 864
Query: 89 RKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACR 148
R PP GP++P P PP GEG+ P P P GS+
Sbjct: 865 RGPP-----GPSIPGPPGPRGPP---------------GEGL-----PGPPGPPGSFLSN 899
Query: 149 VSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQH--PNRAAPPASARRLRSP 206
G PP GPP PPG G PR + P + +S+ L
Sbjct: 900 SETFLSG-------PP--GPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQ 950
Query: 207 GP 208
GP
Sbjct: 951 GP 952
Score = 41.2 bits (95), Expect = 6e-04
Identities = 53/196 (27%), Positives = 66/196 (33%), Gaps = 31/196 (15%)
Query: 36 PPPPSPGRGSELGASAQRPPG----PAFLAAPAFGAGLAVGRLRRVGRRGPEKRQ----- 86
PP P +G + PG P + P GA A+G G +GP Q
Sbjct: 705 PPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEP--GAKGAMGPAGPDGHQGPRGEQGLTGM 762
Query: 87 PGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREG--------EGVLWRRFPLT 138
PG + P P G P P L+ P+ P R + G EG P
Sbjct: 763 PGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGP 822
Query: 139 PPPSGSWACRVSAMGEGCARCLRLPPRR------GPPRPPGLPYPGGLAAPRASPPQHPN 192
P P G+ G A LP + GPP PPG P G + P P+ P
Sbjct: 823 PGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPP 882
Query: 193 RAAPPASARRLRSPGP 208
P PGP
Sbjct: 883 GEGLPG------PPGP 892
Score = 38.1 bits (87), Expect = 0.005
Identities = 63/251 (25%), Positives = 75/251 (29%), Gaps = 76/251 (30%)
Query: 25 QRRAGGEVQTRPPPPSPG----RGSELGASAQRPPGPAFL-------------------- 60
+R A GE PP PG +GS Q PPGP L
Sbjct: 645 ERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMG 704
Query: 61 ---------------------------AAPAFGAGLAVGRLRRVGRRGPEKRQ-----PG 88
A GA A+G G +GP Q PG
Sbjct: 705 PPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPG 764
Query: 89 RKPPIDPLGGPALPRLSSPEPPPAGSDRDWRL----------RLCLREGEGVLWRRFPLT 138
+ P P G P P L+ P+ P R ++ EG +L P
Sbjct: 765 IRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPG 824
Query: 139 PP-------PSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPG--GLAAPRASPPQ 189
PP P G+ A G L L GPP P G P P G PR P +
Sbjct: 825 PPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGE 884
Query: 190 H-PNRAAPPAS 199
P PP S
Sbjct: 885 GLPGPPGPPGS 895
Score = 28.5 bits (62), Expect = 4.3
Identities = 41/158 (25%), Positives = 53/158 (33%), Gaps = 35/158 (22%)
Query: 37 PPPSPGRGSELGASAQRPPGP----AFLAAPAFG-AGLAVGRLRRVGRRGPEKRQPGRKP 91
PP PG G Q PPGP P F +G + L G GP PG +
Sbjct: 907 PPGPPGPPGPKGD--QGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGP----PGPQG 960
Query: 92 PIDPLGGPALP-RLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVS 150
P G P +P L P P G ++ P PP +S
Sbjct: 961 PKGDKGDPGVPGALGIPSGPSEGGS------------SSTMYVSGPPGPPGPPGPPGSIS 1008
Query: 151 AMGEGCARCLR-----------LPPRRGPPRPPGLPYP 177
+ G+ + + L +GPP PPG P P
Sbjct: 1009 SSGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGP 1046
>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
Length = 1024
Score = 47.0 bits (110), Expect = 1e-05
Identities = 57/176 (32%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 54 PPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGR-KPPIDPLGGPALPRL-------S 105
P GP + PA G LRRV GP R+ GR P PL GP PR+ S
Sbjct: 27 PEGPVPQSPPASMYGSTGSLLRRVAGPGPRGRELGRVTAPCTPLRGPPSPRVAPSPWAPS 86
Query: 106 SP--EPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSG---SWAC-------RVSAMG 153
SP +PPP + R E R P P G SW A+G
Sbjct: 87 SPTGQPPPGAQSS----VVIFRFVEKASVRPLNGLPAPGGLSRSWDLGGVSPPRPTPALG 142
Query: 154 EGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPGPS 209
G R LRL P LP GG A P + H A P A L S P+
Sbjct: 143 PGSNRKLRLEASTSDP----LPARGGSALPGSRNLVHGPPAPPQVGADGLYSSLPN 194
Score = 29.3 bits (64), Expect = 2.5
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 101 LPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCL 160
LP P+ PPA + G L RR P P G RV+A
Sbjct: 26 LPEGPVPQSPPAS----------MYGSTGSLLRRVA-GPGPRGRELGRVTAP-------- 66
Query: 161 RLPPRRGPPRPPGLPYPGGLAAPRASPP 188
P RGPP P P P ++P PP
Sbjct: 67 -CTPLRGPPSPRVAPSPWAPSSPTGQPP 93
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 46.6 bits (109), Expect = 2e-05
Identities = 46/132 (34%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 78 GRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPL 137
GR GP QP PP P G P P L SP PP R G + + PL
Sbjct: 10 GRPGPPPPQP---PPPAPFGCPP-PPLPSPAFPPPLPQRPGPF-----PGASAPFLQPPL 60
Query: 138 TPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPG-LPYPGGLAAPRASPPQHPNRAAP 196
P S S G G +PP PP PP P+PG A R PP P P
Sbjct: 61 ALQPRAS--AEASRGGGGAGAFYPVPPPPLPPPPPQCRPFPGTDAGERPRPP--PPGPGP 116
Query: 197 PASARRLRSPGP 208
P S R +P P
Sbjct: 117 PWSPRWPEAPPP 128
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.2 bits (108), Expect = 2e-05
Identities = 60/190 (31%), Positives = 73/190 (38%), Gaps = 20/190 (10%)
Query: 29 GGEVQTRPPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGP-----E 83
G + + P P G + PPGPA A PA G A G+ G G
Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPG-ADGQPGAKGANGAPGIAGA 408
Query: 84 KRQPGRKPPIDPL--GGPALPRLSSPEPPPAGSDRDWRLRLCLREGE-GVLWRRFPLTPP 140
PG + P P GGP P+ +S EP GS D + GE G + + P P
Sbjct: 409 PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK-----GEPGPVGVQGP--PG 461
Query: 141 PSGSWACRVSAMGEGCARCLRLPP-RRGPPRPPGLPYPGGLAAPR--ASPPQHPNRAAPP 197
P+G R A GE L PP RG P G P G+A P+ A P A P
Sbjct: 462 PAGEEGKR-GARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 520
Query: 198 ASARRLRSPG 207
S PG
Sbjct: 521 GSPGEAGRPG 530
Score = 39.3 bits (90), Expect = 0.002
Identities = 56/186 (30%), Positives = 66/186 (35%), Gaps = 26/186 (13%)
Query: 29 GGEVQTRPPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPG 88
G + PP PS G PPGP A G G G GR G E PG
Sbjct: 878 GAAGRVGPPGPSGNAG---------PPGPPGPAGKEGGKGPR-GETGPAGRPG-EVGPPG 926
Query: 89 RKPPIDPLGGPAL--PRLSSPEPPPAG-SDRDWRLRLCLREGEGVLWRRFPLTPPPSGSW 145
P G P P + P P G + + + L + GE R FP P PSG
Sbjct: 927 PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE----RGFPGLPGPSGE- 981
Query: 146 ACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQH--PNRAAPPASARRL 203
G A R PP GP PPGL P G + +P P R P +
Sbjct: 982 ---PGKQGPSGASGERGPP--GPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDR 1036
Query: 204 RSPGPS 209
GP+
Sbjct: 1037 GETGPA 1042
Score = 36.2 bits (82), Expect = 0.021
Identities = 49/190 (25%), Positives = 66/190 (34%), Gaps = 36/190 (18%)
Query: 28 AGGEVQTRPPPPSPGRGSELGASA-------QRPPGPAFLAAPAFGAGLAVGRLRRVGRR 80
A G + R PP PG+ + G + + PPGP AGL G G
Sbjct: 213 ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLP-GMKGHRGFS 271
Query: 81 GPEKRQPGRKPPIDPLGGPALPRLSSP--EPPPAGSDRDWRLRLCLREGEGVLWRRFPLT 138
G + + G P P G P P + + P G + R P
Sbjct: 272 GLDGAK-GDAGPAGPKGEPGSPGENGAPGQMGPRGLPGE---------------RGRPGA 315
Query: 139 PPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPA 198
P P+G+ +G P GP PPG +PG + A + PQ P + P
Sbjct: 316 PGPAGARG------NDGATGAAGPPGPTGPAGPPG--FPGAVGAKGEAGPQGPRGSEGPQ 367
Query: 199 SARRLRSPGP 208
R PGP
Sbjct: 368 GVR--GEPGP 375
Score = 35.0 bits (79), Expect = 0.046
Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 31/185 (16%)
Query: 38 PPSPGRGSELGASAQRPPGPAFLAAPAFGAGL-----AVGRLRRVGRRGP--EKRQPGRK 90
P +PG + GA + PGP + P AG A G G GP E+ PG +
Sbjct: 436 PGAPGSKGDTGAKGE--PGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSR 493
Query: 91 --PPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLT-----PPPSG 143
P D + GP P P PAG R GE L LT P P G
Sbjct: 494 GFPGADGVAGPKGPAGERGSPGPAGPKGS--PGEAGRPGEAGLPGAKGLTGSPGSPGPDG 551
Query: 144 SWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRL 203
A +G R GPP PPG G+ P A P A
Sbjct: 552 KTGPPGPAGQDG---------RPGPPGPPGARGQAGV----MGFPGPKGAAGEPGKAGER 598
Query: 204 RSPGP 208
PGP
Sbjct: 599 GVPGP 603
Score = 35.0 bits (79), Expect = 0.046
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 37 PPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPL 96
PP SPG GAS P +A A G G +G GP R G P+ P
Sbjct: 1122 PPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGR-TGDAGPVGPP 1180
Query: 97 GGPALPRLSSPEPPPAGSD 115
G P P P PP AG D
Sbjct: 1181 GPPGPP--GPPGPPSAGFD 1197
Score = 34.7 bits (78), Expect = 0.060
Identities = 49/183 (26%), Positives = 56/183 (30%), Gaps = 49/183 (26%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFLAAP--AFGAGLAVGRLRRVGRRG----PEKRQPGR 89
P P+ RG+ PPGPA A P A G A G G +G P P
Sbjct: 789 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAG 848
Query: 90 KP-PIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACR 148
P PI +G P PP + G R P P PSG+
Sbjct: 849 PPGPIGNVGAPGAKGARGSAGPPGATG-----------FPGAAGRVGP--PGPSGN---- 891
Query: 149 VSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPR--ASPPQHPNRAAPPASARRLRSP 206
GPP PPG G PR P P PP P
Sbjct: 892 -----------------AGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPG------PP 928
Query: 207 GPS 209
GP+
Sbjct: 929 GPA 931
Score = 30.4 bits (67), Expect = 1.1
Identities = 56/198 (28%), Positives = 66/198 (33%), Gaps = 48/198 (24%)
Query: 38 PPSPGRGSELGASAQR-PPGPAFLAAPAFGAGL--AVGRLRRVGRRGPEKRQ--PGRKPP 92
P + G + GA PPGPA A P G A G G GP PG
Sbjct: 823 PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR 882
Query: 93 IDPLG--GPALPRLSSPEPP-PAGSDRDWRLRLCLREGE-GVLWRRFPLTPP-PSGSWAC 147
+ P G G A P P PP PAG + R GE G R + PP P G
Sbjct: 883 VGPPGPSGNAGP----PGPPGPAGKEGGKGPR-----GETGPAGRPGEVGPPGPPGPAGE 933
Query: 148 RVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRA-----------------SPPQH 190
+ S P GP PG P P G+A R P
Sbjct: 934 KGS------------PGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 981
Query: 191 PNRAAPPASARRLRSPGP 208
P + P ++ PGP
Sbjct: 982 PGKQGPSGASGERGPPGP 999
Score = 30.4 bits (67), Expect = 1.1
Identities = 55/193 (28%), Positives = 65/193 (33%), Gaps = 43/193 (22%)
Query: 40 SPGRGSELGASAQR----PPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDP 95
SPGR GA R P GP A A GA VG + G RG E G P+ P
Sbjct: 1023 SPGRDGSPGAKGDRGETGPAGPPG-APGAPGAPGPVGPAGKSGDRG-ETGPAGPAGPVGP 1080
Query: 96 LG--GPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPP------------- 140
+G GPA P+ + G D ++ G + P PP
Sbjct: 1081 VGARGPAGPQGPRGDKGETGEQGDRGIK----GHRGFSGLQGPPGPPGSPGEQGPSGASG 1136
Query: 141 PSGSWACRVSAMGEGCARCLRLP-------PRR-----------GPPRPPGLPYPGGLAA 182
P+G SA G LP PR GPP PPG P P
Sbjct: 1137 PAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGF 1196
Query: 183 PRASPPQHPNRAA 195
+ PQ P A
Sbjct: 1197 DFSFLPQPPQEKA 1209
Score = 30.0 bits (66), Expect = 1.5
Identities = 40/138 (28%), Positives = 44/138 (31%), Gaps = 21/138 (15%)
Query: 78 GRRGPEKRQPGRKPPIDPLGG-PALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFP 136
G RGP R P P D + G P LP P PP L G
Sbjct: 118 GPRGP--RGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGI 175
Query: 137 LTPPPSGSWACRVSAMGEGCARCLRLPPR-------RGPPRPPGLPYPGGLAAPRASPPQ 189
P P MG R L PP +GPP PG P G PR PP
Sbjct: 176 SVPGP----------MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPR-GPPG 224
Query: 190 HPNRAAPPASARRLRSPG 207
P + A + PG
Sbjct: 225 PPGKNGDDGEAGKPGRPG 242
Score = 28.5 bits (62), Expect = 4.3
Identities = 47/170 (27%), Positives = 55/170 (32%), Gaps = 49/170 (28%)
Query: 30 GEVQTRPPPPSPGRGSELG-ASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPG 88
GE PP + G + G A AQ PPGP A PA G RG ++ P
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGPPGP---AGPA-------------GERG--EQGPA 637
Query: 89 RKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACR 148
P L GPA P + +P G D P PSG
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG------------------APGPSG----- 674
Query: 149 VSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPA 198
A GE P RG PPG P G + + AP A
Sbjct: 675 --ARGE-----RGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGA 717
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 45.8 bits (107), Expect = 3e-05
Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 12/135 (8%)
Query: 71 VGRLRRVGRRGPEKRQPGRKPPID---PLGGPALPRLSSPEPPPAGSDRDWRLRLCLREG 127
+G L GR+ P +R PG P P+ P S P+ P + RD R+
Sbjct: 144 MGLLGDNGRKRPRRRSPGSGRPQRARRPVPNAHAPAPSEPDATPLPTARD-------RDA 196
Query: 128 EGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLR--LPPRRGPPRPPGLPYPGGLAAPRA 185
+ RF +PP S + + L +P R P R PG P P
Sbjct: 197 DPTWTLRFSPSPPKSADASPAPGSPPAPAPTALATCIPEDRAPVRGPGSPPPPPAREDPD 256
Query: 186 SPPQHPNRAAPPASA 200
SPP P APP +A
Sbjct: 257 SPPGRPEDCAPPPAA 271
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 45.8 bits (107), Expect = 3e-05
Identities = 55/210 (26%), Positives = 70/210 (33%), Gaps = 64/210 (30%)
Query: 27 RAGGEVQTRPPPPSPGRGS--ELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
+ G + Q PPPP +G + G Q PP P G+ + +G +
Sbjct: 42 QGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPP--------------GKPQGPPPQGDKS 87
Query: 85 RQPGRKPPIDPLG----------GPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRR 134
R P R PP P G GP P PPP G +R +G
Sbjct: 88 RSP-RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRP----------QGPPPPG 136
Query: 135 FPLTPPPSGSWACRVSAMGEGCARCLRLPPRR-------------GPPRPPGLPY---PG 178
P PPP G + R R PP + GPP PPG P P
Sbjct: 137 KPQGPPPQGDKS-----------RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 185
Query: 179 GLAAPRASPPQHPNRAAPPASARRLRSPGP 208
G P+ PP + PP + S P
Sbjct: 186 GGKKPQGPPPPGKPQGPPPQGDKSRSSQSP 215
Score = 45.1 bits (105), Expect = 4e-05
Identities = 54/194 (27%), Positives = 67/194 (34%), Gaps = 41/194 (21%)
Query: 27 RAGGEVQTRPPPPSPGRGS--ELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
+ G + Q PPPP +G + G Q PP P P + G+
Sbjct: 164 QGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPP 223
Query: 85 RQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGS 144
Q G +P GP P PPP G ++ P PPP G
Sbjct: 224 PQGGNQPQ-----GPPPPPGKPQGPPPQGGNK-------------------PQGPPPPGK 259
Query: 145 WACRVSAMGEGCARCLRLPPRR--GPPR-----PPGLPYPGG-----LAAPRASPPQHPN 192
A G ++ R PP + GPP+ P G P P G AP A PQ P
Sbjct: 260 -PQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPP 318
Query: 193 RAAPPASARRLRSP 206
R PP R R P
Sbjct: 319 R--PPQGGRPSRPP 330
Score = 38.9 bits (89), Expect = 0.003
Identities = 48/194 (24%), Positives = 65/194 (33%), Gaps = 52/194 (26%)
Query: 27 RAGGEVQTRPPPPSPGRGS--ELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
+ G + Q PPPP +G + G Q PP P G+ + +G +
Sbjct: 103 QGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPP--------------GKPQGPPPQGDKS 148
Query: 85 RQPGRKPPIDPLG----------GPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRR 134
R P R PP P G GP P PPP G ++ +G
Sbjct: 149 RSP-RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG----------KKPQGPPPPG 197
Query: 135 FPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRA 194
P PPP G + R + PP + P G P GG PP +
Sbjct: 198 KPQGPPPQGDKS-----------RSSQSPPGK----PQGPPPQGGNQPQGPPPPPGKPQG 242
Query: 195 APPASARRLRSPGP 208
PP + + P P
Sbjct: 243 PPPQGGNKPQGPPP 256
Score = 35.0 bits (79), Expect = 0.046
Identities = 50/194 (25%), Positives = 65/194 (33%), Gaps = 35/194 (18%)
Query: 29 GGEVQTRPPPPSPGRG----SELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEK 84
GG PPPP +G + S + PPG P G G G+
Sbjct: 125 GGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP-QGPPPQGGNQPQGPPPPPGKPQGPP 183
Query: 85 RQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGS 144
Q G+KP GP P P+ PP D+ R + + P PPP G
Sbjct: 184 PQGGKKPQ-----GPPPP--GKPQGPPPQGDKS-------RSSQSPPGK--PQGPPPQGG 227
Query: 145 WACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRA----------SPPQHPNRA 194
+ G + PP +G +P G P PG P A SPP P +
Sbjct: 228 NQPQGPPPPPGKPQG---PPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKP-QG 283
Query: 195 APPASARRLRSPGP 208
P + P P
Sbjct: 284 PPQQEGNNPQGPPP 297
Score = 34.3 bits (77), Expect = 0.078
Identities = 34/140 (24%), Positives = 40/140 (28%), Gaps = 36/140 (25%)
Query: 69 LAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGE 128
L G + +G K Q PP P G P PPP G
Sbjct: 31 LIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK-------------- 76
Query: 129 GVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPP 188
P PPP G + PR P +P G P GG PP
Sbjct: 77 -------PQGPPPQGDKS---------------RSPRSPPGKPQGPPPQGGNQPQGPPPP 114
Query: 189 QHPNRAAPPASARRLRSPGP 208
+ PP R + P P
Sbjct: 115 PGKPQGPPPQGGNRPQGPPP 134
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 45.8 bits (107), Expect = 3e-05
Identities = 41/151 (27%), Positives = 50/151 (33%), Gaps = 39/151 (25%)
Query: 67 AGLAVGRLRRVGRRGPEKRQPGRK------PPIDPLGGPALPRLSSPEPPPAGSDRDWRL 120
A L V + R + QP R+ PP P G PA ++P P PA
Sbjct: 81 AVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPP------ 134
Query: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPP-------- 172
PPP+ A + A PP GP +P
Sbjct: 135 ------------------PPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAP 176
Query: 173 -GLPYPGGLAAPRASPPQHPNRAAPPASARR 202
P P A P +PP P RA PPA A R
Sbjct: 177 LAAPPPAPAAPPAVAPPAGPRRAPPPAVAAR 207
Score = 43.1 bits (100), Expect = 2e-04
Identities = 55/204 (26%), Positives = 67/204 (32%), Gaps = 41/204 (20%)
Query: 8 RLFSVLADLRVRLSRALQRRAGGEVQ------TRPPPPSPGRGSELGASAQRPPG-PAFL 60
+L A LRV ++ R VQ T P PP RG+ A+A PP PA
Sbjct: 75 KLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPP 134
Query: 61 AAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPALPR---LSSPEPPPAGSDRD 117
PA A A R R P P P GP R L++P P PA
Sbjct: 135 PPPAPVAAAAPARAPRAAAAAATA--PPSPGPAQP--GPRAQRAAPLAAPPPAPAAP--- 187
Query: 118 WRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYP 177
P PP+G A+ R PP PP+PP P
Sbjct: 188 ------------------PAVAPPAGPRRAPPPAVAA------REPPLPPPPQPPAPPQQ 223
Query: 178 GGLAAPRASPPQHPNRAAPPASAR 201
P+ PP +AR
Sbjct: 224 QQPPPPQPQPPPEGGAVRAGGAAR 247
Score = 34.7 bits (78), Expect = 0.060
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 18/65 (27%)
Query: 163 PPRRG--PPRPPGLPYPGGLAAPRASPPQHPNRAAPPA----------------SARRLR 204
PPRRG PP PP P AA A+PP P PPA +A
Sbjct: 101 PPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP 160
Query: 205 SPGPS 209
SPGP+
Sbjct: 161 SPGPA 165
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 45.1 bits (105), Expect = 4e-05
Identities = 49/184 (26%), Positives = 63/184 (34%), Gaps = 24/184 (13%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDP 95
PP P+P Q PP P P + +A + Q PP+ P
Sbjct: 561 PPCPAP-------CPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSP 613
Query: 96 LGGP--------ALPRLSSPEPPPAGSDRDWRLRLCLREGEGVL---WRRFPLTPPPSGS 144
L P ALP L +P PPA L + L + P +PPPS
Sbjct: 614 LATPPPQAPPXLALPPLQAPPSPPASPPLS-PLATPSPQAPNALAVHLLQAPFSPPPSPP 672
Query: 145 WACRVSAMGEGCARCLRLPPRRGPPR--PPGLPYPGGLAAPRASPPQHPNRAAPPASARR 202
S PP + PP P L P +P ASPP P+ PP +
Sbjct: 673 VQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVP---PSPPASPPMSPSATPPPQAPPP 729
Query: 203 LRSP 206
L +P
Sbjct: 730 LAAP 733
Score = 39.3 bits (90), Expect = 0.002
Identities = 53/200 (26%), Positives = 71/200 (35%), Gaps = 26/200 (13%)
Query: 26 RRAGGEV-------QTRPPPPSPGRGSELGASAQRP---PGPAFLAAPAFGAGLAVGRLR 75
R AG EV RP PP+ G + ++++ P PA P+ G GL R
Sbjct: 181 RAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASR 240
Query: 76 RVGRRGPEKRQPGRKPPIDPLGGPALP-RLSSPEPPPAGSDRDWRLRLCLREGEGVLW-- 132
+ P R P G P P S P+P + R ++ ++ L
Sbjct: 241 SLSSSATPLSSPARSGP-SARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPL 299
Query: 133 RRFPL-TPPPSGSWACRVSAMGEGCARC---------LRLPPRRGPPRPPGLPYPGGLAA 182
PL TP PSG+ A V L P PP P P L +
Sbjct: 300 SSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPS 359
Query: 183 PRASPPQH--PNRAAPPASA 200
P A+PP P+ PP A
Sbjct: 360 PPATPPSQAPPSMTTPPMQA 379
Score = 33.9 bits (76), Expect = 0.10
Identities = 46/182 (25%), Positives = 59/182 (32%), Gaps = 19/182 (10%)
Query: 38 PPSPGRGSELGASAQRPP-GPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPL 96
PPSP + SA PP P LAAP + + P P R PP+
Sbjct: 707 PPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMS---PSATPPPRVPPL--- 760
Query: 97 GGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRV--SAMGE 154
A P L P PPA + + + P P S+ + S
Sbjct: 761 --LAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSAS 818
Query: 155 GCARCLRLPPRRGPPR--------PPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSP 206
L PP + PP PP P L APR P P+ + +P
Sbjct: 819 LPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAP 878
Query: 207 GP 208
GP
Sbjct: 879 GP 880
Score = 33.1 bits (74), Expect = 0.17
Identities = 66/244 (27%), Positives = 79/244 (32%), Gaps = 65/244 (26%)
Query: 22 RALQRRAGGEVQTRPP--PPSPGRGSELGASAQRPPGPAFLAAPAFGA---------GLA 70
RA R+ G P PP+ GRG + PGP A G GL
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLR 135
Query: 71 VGRLRRVGRRGPEKRQPGRKP-----------PIDPLGGPALPRLSS--------PEPPP 111
+ V RG P R P PA+ R S P P P
Sbjct: 136 ISAEETVA-RGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAP 194
Query: 112 AGSDRDWRLRLCLREG--EGVLWRRFPLTPPPSGSWACRVSAMG----------EGCARC 159
+ R EG + V T PS + R SA G A
Sbjct: 195 SARPRP------PTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATP 248
Query: 160 LRLPPRRGP--------PRPPGLPYPGGLAA---PRASPPQHPNRAAP---PASARRLRS 205
L P R GP P P P P GL A P+ +PP+ AAP P S+ L +
Sbjct: 249 LSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR--KDAAPALGPLSSSPLAT 306
Query: 206 PGPS 209
P PS
Sbjct: 307 PSPS 310
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 45.1 bits (105), Expect = 4e-05
Identities = 50/176 (28%), Positives = 59/176 (33%), Gaps = 61/176 (34%)
Query: 31 EVQTRPPPPSPGRGSELGASAQR---PPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQ- 86
+ + PPPP S S PP PA + P V R G GP++
Sbjct: 242 DASSYPPPPQSDSASSPSPSFSEDNLPPPPAEFSYP-------VDNQRGSGLAGPKRSSV 294
Query: 87 --PGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGS 144
P PP PLG P P+ PPPA P PPP
Sbjct: 295 VSPSHPPPAPPLGSPPGPK-PGFAPPPA-----------------------PPPPPPP-- 328
Query: 145 WACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQ---HPNRAAPP 197
+ +PP PP P G PG P SPP HP+ AAPP
Sbjct: 329 --------------MIGIPP---PPPPVGFGSPG--TPPPPSPPSFPPHPDFAAPP 365
Score = 45.1 bits (105), Expect = 4e-05
Identities = 44/177 (24%), Positives = 54/177 (30%), Gaps = 50/177 (28%)
Query: 37 PPPSPGRGSELGAS-------AQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGR 89
PPP+P GS G A PP P + P + G PG
Sbjct: 300 PPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFG-------------SPGT 346
Query: 90 KPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRV 149
PP P P P ++P PPP D +P PPP
Sbjct: 347 PPPPSPPSFPPHPDFAAPPPPPPPPAAD-----------------YPTLPPP-------- 381
Query: 150 SAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPP----QHPNRAAPPASARR 202
+ + PP PP PP P+ G P PP P + P S R
Sbjct: 382 -PLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPLSDTTKPKSSLPAVSDAR 437
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 45.1 bits (105), Expect = 4e-05
Identities = 57/180 (31%), Positives = 62/180 (34%), Gaps = 56/180 (31%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRK-PPID 94
PPPP PG G PP P P GAG+ P PG PP
Sbjct: 1098 PPPPLPGVGI--------PPPP-----PLPGAGIP-----------PPPPLPGAGIPPPP 1133
Query: 95 PLGG------PALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACR 148
PL G P LPR+ P PPP G G+ P PP G+
Sbjct: 1134 PLPGAGIPPPPPLPRVGIPPPPPL-------------PGAGI-----PPPPPLPGAGIPP 1175
Query: 149 VSAM-GEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPG 207
+ G G PP G PP P PG P PP P PPA A L PG
Sbjct: 1176 PPPLPGVGIP---PPPPLPGVGIPPPPPLPGAGIPP---PPPLPGMGIPPAPAPPLPPPG 1229
Score = 40.8 bits (94), Expect = 8e-04
Identities = 56/182 (30%), Positives = 62/182 (34%), Gaps = 44/182 (24%)
Query: 29 GGEVQTRPPPPSPGRGSELGASAQRPPGPAFLAAPAFGAG-LAVGRLRRVGRRGPEKRQP 87
G E+ PPPP PG G PP P P GAG L + L G P
Sbjct: 904 GTEMLPPPPPPLPGAGI--------PPPP-----PLPGAGILPLPPLPGAGIPPPPPLPG 950
Query: 88 GRKPPIDPLGG------PALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPP 141
PP PL G P LP P PPP G G+ P PP
Sbjct: 951 AAIPPPPPLPGAGIPLPPPLPGAGIPPPPPL-------------PGAGI-----PPPPPL 992
Query: 142 SGSWACRVSAM-GEGCARCLRLPPRRGPPRPP----GLPYPGGL-AAPRASPPQHPNRAA 195
G+ + G G LP PP PP G+P P L A PP P
Sbjct: 993 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1052
Query: 196 PP 197
PP
Sbjct: 1053 PP 1054
Score = 38.5 bits (88), Expect = 0.004
Identities = 52/167 (31%), Positives = 58/167 (34%), Gaps = 42/167 (25%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGR-LRRVGRRGPEKRQPGRKPPID 94
PPPP PG G PP P P GAG+ L RVG P PP
Sbjct: 1120 PPPPLPGAGI--------PPPP-----PLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPP 1166
Query: 95 PLGG------PALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACR 148
PL G P LP + P PPP G G+ P PP G+
Sbjct: 1167 PLPGAGIPPPPPLPGVGIPPPPPL-------------PGVGI-----PPPPPLPGAGIPP 1208
Query: 149 ---VSAMGEGCARCLRLPPR-RGPPRPPGLPYPGGLAAPRASPPQHP 191
+ MG A LPP G P PP LP G P+ P
Sbjct: 1209 PPPLPGMGIPPAPAPPLPPPGTGIPPPPLLPVSGPPLLPQVGSSTLP 1255
Score = 35.8 bits (81), Expect = 0.027
Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 21/110 (19%)
Query: 87 PGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWA 146
P PP+ + P LP + P+PPP +G +L P PPP
Sbjct: 877 PPPPPPLPGMTVPTLPSTAIPQPPPL-------------QGTEML----PPPPPPLPGAG 919
Query: 147 CRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAP 196
G A L LPP G PP P PG P PP P P
Sbjct: 920 IPPPPPLPG-AGILPLPPLPGAGIPPPPPLPGAAIPP---PPPLPGAGIP 965
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 44.7 bits (104), Expect = 6e-05
Identities = 50/161 (31%), Positives = 55/161 (34%), Gaps = 50/161 (31%)
Query: 36 PPPPSPGRGSELGASAQRPP----GPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKP 91
PPPP P RG G PP GP PA G G P R P P
Sbjct: 277 PPPPPPSRG---GPPPPPPPPHNSGPP--PPPARGRGAPPP---------PPSRAPTAAP 322
Query: 92 PIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPP------PSGSW 145
P P P+ P ++ P PPP R +P PP PSG
Sbjct: 323 PPPP---PSRPSVAVPPPPPN--------------------RMYPPPPPALPSSAPSGPP 359
Query: 146 ACRVSAMGEGCARCLRLPPRR---GPPRPPGLPYPGGLAAP 183
S +G G PP GPP PPGLP G P
Sbjct: 360 PPPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLPSDGDHQVP 400
Score = 38.9 bits (89), Expect = 0.003
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 163 PPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPGP 208
PP RG PP P AAP PP P+ A PP R+ P P
Sbjct: 302 PPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPP 347
Score = 33.5 bits (75), Expect = 0.13
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 163 PPRRGPPRPPGLPYPGGLAAP----RASPPQHPNRA------APPASARRLRSPGP 208
P R GPP PP P+ G P R +PP P+RA PP S + P P
Sbjct: 282 PSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPP 337
Score = 29.6 bits (65), Expect = 1.9
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 165 RRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPGPS 209
R+ PP PP P GG P PP + PPA R P PS
Sbjct: 274 RQAPPPPP--PSRGG-PPPPPPPPHNSGPPPPPARGRGAPPPPPS 315
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 44.7 bits (104), Expect = 6e-05
Identities = 50/182 (27%), Positives = 62/182 (34%), Gaps = 40/182 (21%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAV-----GRLRRVGRRGPEKRQPGRK 90
PP P+PG + G +A P P+ P+ AGL+ G R G G
Sbjct: 157 PPRPAPGLEPQRGPAASPPQEPSS-RPPSPPAGLSTEPAGPGTAPRPFLPGQPAEVDGNP 215
Query: 91 PPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLW---RRFPLTPPPSGSWAC 147
PP P A P +SP P G R +R + LW + F L P
Sbjct: 216 PPAAPEAPAASPSTASPAPAAPGDLRQEHFDRLIRRSK--LWCYAKGFALDTPSL----- 268
Query: 148 RVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPG 207
RRGP RPP G A R P APP + R P
Sbjct: 269 -----------------RRGPERPPAKGPARGAAKKRRLP-------APPPRTAQPRRPA 304
Query: 208 PS 209
P+
Sbjct: 305 PT 306
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 44.3 bits (103), Expect = 8e-05
Identities = 45/153 (29%), Positives = 55/153 (35%), Gaps = 5/153 (3%)
Query: 36 PPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDP 95
PP +E G+ A P P A P F L + RGP P PP P
Sbjct: 732 PPEDDSSLRAERGSLADLPMAPPASAPPEFLDPLMGAAAPQYPGRGPPPAPP---PPPPP 788
Query: 96 LGGPALPRLSSPEPPPAGSDRDWRLRLC-LREGEGVLWRRFPLTPPPSGSWACRVSAMGE 154
PA P +SP+PP A + L + G+ P +P + G
Sbjct: 789 PRAPADPA-ASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGV 847
Query: 155 GCARCLRLPPRRGPPRPPGLPYPGGLAAPRASP 187
R PP G PRPP P P L PR P
Sbjct: 848 PRPRAPPEPPDPGAPRPPPDPGPLPLPGPREKP 880
Score = 41.6 bits (96), Expect = 5e-04
Identities = 37/107 (34%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 102 PRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLR 161
P L P PP S LR G L P+ PP S MG A +
Sbjct: 725 PALGCPHPPEDDSS--------LRAERGSL-ADLPMAPPASAPPEFLDPLMG---AAAPQ 772
Query: 162 LPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPASARRLRSPGP 208
P R PP PP P P A A+ P P+ A P S L SPGP
Sbjct: 773 YPGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSG--LSSPGP 817
Score = 29.6 bits (65), Expect = 1.9
Identities = 54/209 (25%), Positives = 67/209 (32%), Gaps = 40/209 (19%)
Query: 21 SRALQRRAGGEVQTRPPPPSPGRGS-ELGASAQRPPGPAFLAAPAFG-AGLAVGRLRRVG 78
S + R GGE P P+P G+ E G + P AP G L G VG
Sbjct: 1088 SAVVSSRNGGETAPGPLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGGRAPVG 1147
Query: 79 RRGPEKRQPGR--------------KPPIDPLGGP--ALPRLSSPEPPPAGSDRDWRLRL 122
PG +PP PL P A PR P PP A +
Sbjct: 1148 TGTAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPE------- 1200
Query: 123 CLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPP---GLPYPGG 179
EGE P P +S G+ P R+GP P L P G
Sbjct: 1201 VAPEGE-------PGAPDSRAGGDTALSGDGDP-----PKPERKGPEMPRLFLDLGPPQG 1248
Query: 180 LAAPRASPPQHPNRAAPPASARRLRSPGP 208
+ + + A PP + PGP
Sbjct: 1249 NSEQIKARLSRLSLALPPLTLTPFPGPGP 1277
Score = 29.6 bits (65), Expect = 1.9
Identities = 50/194 (25%), Positives = 57/194 (29%), Gaps = 36/194 (18%)
Query: 27 RAGGEVQTRPPPPSPGRGSELGASAQR----PPGPAFLAAPAFGAGLAVGRLRRVGRRGP 82
+AG TRP PP P A +R PP AP G R G
Sbjct: 1163 KAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRAG-----GD 1217
Query: 83 EKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPS 142
PP GP +PRL PP G+ + RL R L PP
Sbjct: 1218 TALSGDGDPPKPERKGPEMPRLFLDLGPPQGNSEQIKARL----------SRLSLALPP- 1266
Query: 143 GSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAP---------RASPPQHPNR 193
G G R PP G GG AP +
Sbjct: 1267 ---LTLTPFPGPGPRR----PPWEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEEDEE 1319
Query: 194 AAPPASARRLRSPG 207
AA P +A R PG
Sbjct: 1320 AAAPGAAAGPRGPG 1333
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 43.9 bits (102), Expect = 1e-04
Identities = 58/166 (34%), Positives = 64/166 (38%), Gaps = 31/166 (18%)
Query: 49 ASAQRPPGPAFLAAPAFGAGLAV-GRLRRVGRRGPEKRQPGRKPPIDPLGGPALP--RLS 105
A QR P AA A A LA+ GR G G + R G P P R+S
Sbjct: 11 AGLQRTP-----AAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
Query: 106 SPEP------PPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWA-CRVSAMGEGCAR 158
+P P PP G R R R LR G V +P P G A C A G R
Sbjct: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFV-------SPGPLGRRASCSGRAGSAGRLR 118
Query: 159 C----LRLPPRRGPPR---PPGLP--YPGGLAAPRASPPQHPNRAA 195
C L R GP R PP L PG + PRASP P A
Sbjct: 119 CSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA 164
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 43.9 bits (102), Expect = 1e-04
Identities = 58/166 (34%), Positives = 64/166 (38%), Gaps = 31/166 (18%)
Query: 49 ASAQRPPGPAFLAAPAFGAGLAV-GRLRRVGRRGPEKRQPGRKPPIDPLGGPALP--RLS 105
A QR P AA A A LA+ GR G G + R G P P R+S
Sbjct: 11 AGLQRTP-----AAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
Query: 106 SPEP------PPAGSDRDWRLRLCLREGEGVLWRRFPLTPPPSGSWA-CRVSAMGEGCAR 158
+P P PP G R R R LR G V +P P G A C A G R
Sbjct: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFV-------SPGPLGRRASCSGRAGSAGRLR 118
Query: 159 C----LRLPPRRGPPR---PPGLP--YPGGLAAPRASPPQHPNRAA 195
C L R GP R PP L PG + PRASP P A
Sbjct: 119 CSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA 164
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 43.9 bits (102), Expect = 1e-04
Identities = 50/199 (25%), Positives = 71/199 (35%), Gaps = 48/199 (24%)
Query: 35 RPPPPSPGRGSELGASAQRPPGPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPID 94
+PPPP +G PP +L + G+G V RL + G P PP+
Sbjct: 426 QPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSG--VYRLHQ----GKGMMPP---PPMG 476
Query: 95 PLGGPALPRLSSPEPPPAGSDRDWRLRL-----------CLREGEGVLWRRFPLT----- 138
+ P P P PPP+G W+ + + + W++ T
Sbjct: 477 MMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSA 536
Query: 139 -----PPPSGSWACRVSAMG----EGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQ 189
PP A ++ G +G + LPP PP PPG P PP
Sbjct: 537 GTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAP-----------PPP 585
Query: 190 HPNRAAPPASARRLRSPGP 208
P PP SA + +P P
Sbjct: 586 PP---PPPGSAGMMYAPPP 601
Score = 35.0 bits (79), Expect = 0.046
Identities = 43/158 (27%), Positives = 57/158 (36%), Gaps = 39/158 (24%)
Query: 33 QTRPPPPSPGRGSELGASAQRP---------------PGPAFLAAPAFGAGLAVGRLRRV 77
Q + PPP P S + +S P P + A A + G +
Sbjct: 503 QQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQA-AAAASPGAPQMQ 561
Query: 78 GRRGPEKRQPGRKPPIDPLGGPALPRLSSPEPPPAGSDRDWRLRLCLREGEGVLWRRFPL 137
G PG +PP+ P G P P PPP GS G+++ P
Sbjct: 562 GNPTMVPLPPGVQPPLPP-GAP-----PPPPPPPPGS-------------AGMMYAPPPP 602
Query: 138 TPPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLP 175
PPP + V+ MG G A +PP PP PP P
Sbjct: 603 PPPPMDP-SNFVTMMGMGVA---GMPPFGMPPAPPPPP 636
Score = 31.2 bits (69), Expect = 0.66
Identities = 34/130 (26%), Positives = 44/130 (33%), Gaps = 36/130 (27%)
Query: 87 PGRKPPIDPLG-GPALPRLSSPEP-------PPAGSDRDWRLRLCLREGEGVLWRRFPLT 138
P +PP P+ GP P P P P GS L +G+G++
Sbjct: 423 PWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGV-----YRLHQGKGMM------P 471
Query: 139 PPPSGSWACRVSAMGEGCARCLRLPPRRGPPRPPGLPYPGGLAAPRASPPQHPNRAAPPA 198
PPP G +PP PP P P G P Q P PP+
Sbjct: 472 PPPMGM-----------------MPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPS 514
Query: 199 SARRLRSPGP 208
S+ +P P
Sbjct: 515 SSMASSTPLP 524
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,331,206
Number of Sequences: 37866
Number of extensions: 1129218
Number of successful extensions: 15365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 1137
Number of HSP's that attempted gapping in prelim test: 8414
Number of HSP's gapped (non-prelim): 6162
length of query: 209
length of database: 18,247,518
effective HSP length: 98
effective length of query: 111
effective length of database: 14,536,650
effective search space: 1613568150
effective search space used: 1613568150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.