Guide to the Human Genome
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Name: LOC100288618 Sequence: fasta or formatted (209aa) NCBI GI: 239744069
Description:

PREDICTED: hypothetical protein XP_002344285

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         26           2
 C cysteine            1.9          4           1
 D aspartate           1.9          4           1
 E glutamate           3.3          7           1
 F phenylalanine       1.9          4           1
 G glycine            12.4         26           2
 H histidine           0.5          1           1
 I isoleucine          0.5          1           1
 K lysine              0.5          1           1
 L leucine            10.5         22           1
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline            19.1         40           4
 Q glutamine           2.4          5           1
 R arginine           16.7         35           2
 S serine              7.7         16           2
 T threonine           1.0          2           1
 V valine              3.3          7           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344285 
LOC100289901          1.000   PREDICTED: hypothetical protein XP_002347167 
LOC100291890          0.993   PREDICTED: hypothetical protein XP_002344521 
PRB2                  0.068   proline-rich protein BstNI subfamily 2 
WIPF2                 0.063   WIRE protein 
PRB1                  0.060   proline-rich protein BstNI subfamily 1 isoform 2 pre...
HCN2                  0.056   hyperpolarization activated cyclic nucleotide-gated...
ARHGAP17              0.056   nadrin isoform 1 
ARHGAP17              0.056   nadrin isoform 2 
COL17A1               0.056   alpha 1 type XVII collagen 
EMID2                 0.056   EMI domain containing 2 
PSD                   0.053   pleckstrin and Sec7 domain containing 
WBP11                 0.053   WW domain binding protein 11 
LOC100292378          0.053   PREDICTED: hypothetical protein 
COL4A5                0.053   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.053   type IV collagen alpha 5 isoform 3 precursor 
UTF1                  0.053   undifferentiated embryonic cell transcription factor...
PDCD7                 0.053   programmed cell death 7 
PRB1                  0.051   proline-rich protein BstNI subfamily 1 isoform 1 pre...
FMN2                  0.051   formin 2 
COL1A1                0.048   alpha 1 type I collagen preproprotein 
FLJ22184              0.048   PREDICTED: hypothetical protein FLJ22184 
SAMD1                 0.048   sterile alpha motif domain containing 1 
WASF2                 0.048   WAS protein family, member 2 
WASL                  0.046   Wiskott-Aldrich syndrome gene-like protein 
LMTK3                 0.046   lemur tyrosine kinase 3 
C17orf96              0.046   hypothetical protein LOC100170841 
SF1                   0.046   splicing factor 1 isoform 1 
LOC100293375          0.046   PREDICTED: hypothetical protein 
LOC645321             0.046   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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